PI0024091 (gene) Melon (PI 482460) v1

Overview


Name	PI0024091
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr05: 9516434 .. 9518264 (+)
RNA-Seq Expression	PI0024091
Synteny	PI0024091

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGCGTAATACAAACATTTGTTCACCAACTCACCAAGTCAAGCTCACTTACTCGAAACGCATGAAGTCTGCAATCAGCTCGCGCAATCCAGCTCGCATAATGCATCATTCTTCTTACTCAGCTCGCAAATCTTCTGATCGCCTAAAAACGGTTATTATAACCGCCGAGCCCAAGCCCACGGCCCAAGCCCATTGTAGCAAAATAACCGCCAAATAGCAGTTATTTTGCAGATTTAGCCTTCAGTAGAAACCTATAAATACCCCATTGTAATTCAACTCAATCAACTTTGAATTTCATACTAAATCCTTAATACAAAGTCTATAGAATTTTCTCTTTGCTTTTATCCCTGCAAAATAAAATTTCCTTACCCTTACTATGCAAAATTCTCTTTGGAAATTCCCTTTTTCAAAAGTACCAAGCCAAGGTCAGTCGGGCATGCTTGGCGTTTTATCCTTTATCCACCGAATTCCCAAAGAGTAATCTTTCTGGTAAGTTGGGTTAACTTCCTCGCATACTTCGAAAGGTAAAGAAACTTCATTCCGCGTTCTAATTTTCGACTGTGTAATGCCTCTATGCGATTATCCCGAATTGCATGCTGTCTAAATTTCTAGGCCCTAGACAAATTGCGTTATAATTCCTCATTAATAACTGAGCGCTGAACCATTGTTAAATCGCATTCTGCTTGTTATGCTTTATCGCCGAATAGCCAGTTAATAAAACTATCTCGCCTTTCTCGCATAACAATACTGCCTTGCACTTTAATTTTGTTAAGTATACGCTGAGTTGCTTAGTAAATCTTGATCATTTTATGCGTTTTGAATAGATAACATCTTATCGCCTAGCTTAATTTCTGTTCAAACACCTCGCGTACTTCTTACTTCAATTAAGGCAGATCGCTGAGACAGCCCTTAATTGCACTAAGAAGTACACTATTGCGTGTAAATTGATCTCGCATATTCTTTTATGAATCGCATGTCTCACGCCTGCCTTGAAGACCAATATGCGTTGATAGTTTACTCTTTCTTATCGCATAATACGTTTTTAAGGAACCAAAAAAAGAAGTTCTACAGATTCTGATTACCATTTCTTTCCTCTACCGCATTCTCTTTACAGCTTTAATTCTCATTTTCTTTTCTCGCCTAATACAAACCCCCCCCAATTATACTAATCAATTTCGTTTCTTGAAGCTAATCTTTTTTTCTTAAACCTAAATCAATTTCGAAAGCACTCAGTTCGCTCCCTTGGGTACGACAGCTCATCTTCAAATACTTCACCGCTACATCATATAGTTCAAGCAAGCATGTGGTGCATCGGCTGACAAAACCCCTACTGAGGCTAGAGAGATCATTTCAAGGATGGCTGAAAATTCACAGAACTTTGGAAATAGGGCATCCGAGCTCGACAATTCATTGACCAGGAAGGTAAGTGAACTCAAATCACAAATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCAAAGTGCCAGTGTGCGGTCTAGTCAGACATCCTAATGACAAGTGCCCTGAGTTAGTGGAAGAGGCAAATGTCATTAGGAAGTACGATCCTCATAGCAATACTTACAATGCCGGTTGGAGAGACAACCTTAATCTAAGGTGGGGAAACGAAAACCAAAGACCCTCGCAACCAACCTCCTCTTTAAACAATCAAGGTACAAATTTAGAAGATTTAGTTAAAGCTCTTGCTACTAATACTATCTCTTTTCAGAATGAAATGAAGCAACAAATGTCTCATCTGACCAATGCAATAAGCATATTAGAAGGTAAAGGAAAACTTCCAGCTTAG

mRNA sequence

ATGTCGCGTAATACAAACATTTGTTCACCAACTCACCAAGTCAAGCTCACTTACTCGAAACGCATGAAGTCTGCAATCAGCTCGCGCAATCCAGCTCGCATAATGCATCATTCTTCTTACTCAGCTCGCAAATCTTCTGATCGCCTAAAAACGTTCAAGCAAGCATGTGGTGCATCGGCTGACAAAACCCCTACTGAGGCTAGAGAGATCATTTCAAGGATGGCTGAAAATTCACAGAACTTTGGAAATAGGGCATCCGAGCTCGACAATTCATTGACCAGGAAGAATGAAATGAAGCAACAAATGTCTCATCTGACCAATGCAATAAGCATATTAGAAGGTAAAGGAAAACTTCCAGCTTAG

Coding sequence (CDS)

ATGTCGCGTAATACAAACATTTGTTCACCAACTCACCAAGTCAAGCTCACTTACTCGAAACGCATGAAGTCTGCAATCAGCTCGCGCAATCCAGCTCGCATAATGCATCATTCTTCTTACTCAGCTCGCAAATCTTCTGATCGCCTAAAAACGTTCAAGCAAGCATGTGGTGCATCGGCTGACAAAACCCCTACTGAGGCTAGAGAGATCATTTCAAGGATGGCTGAAAATTCACAGAACTTTGGAAATAGGGCATCCGAGCTCGACAATTCATTGACCAGGAAGAATGAAATGAAGCAACAAATGTCTCATCTGACCAATGCAATAAGCATATTAGAAGGTAAAGGAAAACTTCCAGCTTAG

Protein sequence

MSRNTNICSPTHQVKLTYSKRMKSAISSRNPARIMHHSSYSARKSSDRLKTFKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTRKNEMKQQMSHLTNAISILEGKGKLPA

Homology

[Close]

BLAST of PI0024091 vs. ExPASy TrEMBL
Match: A0A5A7V4B8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00120 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 2.3e-15
Identity = 51/66 (77.27%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 55  ACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTRKNEMKQQMSHLTNAISILEG 114
           A GA ADKTPT+ARE+I RM ENSQ+FGNRASELDNSLT+  EMKQQMS LT AIS + G
Sbjct: 154 ARGALADKTPTKARELILRMTENSQSFGNRASELDNSLTK--EMKQQMSQLTTAISKMHG 213

Query: 115 KGKLPA 121
           KGKLPA
Sbjct: 214 KGKLPA 217

[Close]

BLAST of PI0024091 vs. ExPASy TrEMBL
Match: A0A5D3CJL9 (Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00040 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.4e-11
Identity = 54/110 (49.09%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 31  PARIMHHSSYSARKSSD------RLKTFKQACGASADKTPTEAREIISRMAENSQNFGNR 90
           P R M H   + R   +      R      A GA ADKTPT A+E+IS MAENSQ+FGNR
Sbjct: 16  PDRTMWHHQITPRVGREVTSLNPRNTVDTTAEGALADKTPTVAQELISIMAENSQSFGNR 75

Query: 91  ASELDNSLTRK--------------NEMKQQMSHLTNAISILEGKGKLPA 121
           ASELDNSLT++               E+KQQM+ L  AIS ++GKGKLPA
Sbjct: 76  ASELDNSLTKECGVCGLVGHPNDKCPEVKQQMTQLATAISKIDGKGKLPA 125

[Close]

BLAST of PI0024091 vs. ExPASy TrEMBL
Match: A0A5A7SQH8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00200 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-10
Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 40  YSARKSSDRLKTFKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTRK-NEM 99
           YS   S DR K    A GA ADKTP EARE+I RMAENSQNFGNRASELDNSLT++ +E+
Sbjct: 99  YSGLLSFDRNKVDAAARGALADKTPIEARELILRMAENSQNFGNRASELDNSLTKEVSEL 158

Query: 100 KQQMSHLTNAIS 111
           K QM ++T  ++
Sbjct: 159 KSQMLNMTTLLT 170

[Close]

BLAST of PI0024091 vs. ExPASy TrEMBL
Match: A0A5D3CZ23 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00950 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.8e-10
Identity = 54/130 (41.54%), Postives = 64/130 (49.23%), Query Frame = 0


Query: 40  YSARKSSDRLKTFKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTR----- 99
           YS   S DR+     A GA  +KTPTEARE+ISRMAENSQ+FGNRASELD+SLT+     
Sbjct: 166 YSGLLSFDRITVDAAAGGALVNKTPTEARELISRMAENSQSFGNRASELDDSLTKECGVC 225

Query: 100 --------------------------------------------KNEMKQQMSHLTNAIS 121
                                                       + EMKQQM+ LT AIS
Sbjct: 226 GLVGHLNDKCPELIEDVNIVRRYDPHGTNLEDIIKALETNTLSFQQEMKQQMTQLTTAIS 285

[Close]

BLAST of PI0024091 vs. ExPASy TrEMBL
Match: A0A5A7TXC8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1096G00170 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 5.0e-10
Identity = 52/124 (41.94%), Postives = 60/124 (48.39%), Query Frame = 0


Query: 52  FKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTR----------------- 111
           +  A GA ADKTP EARE+ISRMAENSQ+FGNRASELDNSLT+                 
Sbjct: 152 YAAAGGALADKTPIEARELISRMAENSQSFGNRASELDNSLTKEVSTPLKVTKCGVCSLV 211

Query: 112 --------------------------------------KNEMKQQMSHLTNAISILEGKG 121
                                                 + EMKQQM+ LT AIS ++GKG
Sbjct: 212 GHPNDKCPEHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 271

[Close]

BLAST of PI0024091 vs. NCBI nr
Match: KAA0061336.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14690.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 4.8e-15
Identity = 51/66 (77.27%), Postives = 56/66 (84.85%), Query Frame = 0


Query: 55  ACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTRKNEMKQQMSHLTNAISILEG 114
           A GA ADKTPT+ARE+I RM ENSQ+FGNRASELDNSLT+  EMKQQMS LT AIS + G
Sbjct: 154 ARGALADKTPTKARELILRMTENSQSFGNRASELDNSLTK--EMKQQMSQLTTAISKMHG 213

Query: 115 KGKLPA 121
           KGKLPA
Sbjct: 214 KGKLPA 217

[Close]

BLAST of PI0024091 vs. NCBI nr
Match: KAA0040931.1 (Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK10606.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 7.1e-11
Identity = 54/110 (49.09%), Postives = 65/110 (59.09%), Query Frame = 0


Query: 31  PARIMHHSSYSARKSSD------RLKTFKQACGASADKTPTEAREIISRMAENSQNFGNR 90
           P R M H   + R   +      R      A GA ADKTPT A+E+IS MAENSQ+FGNR
Sbjct: 16  PDRTMWHHQITPRVGREVTSLNPRNTVDTTAEGALADKTPTVAQELISIMAENSQSFGNR 75

Query: 91  ASELDNSLTRK--------------NEMKQQMSHLTNAISILEGKGKLPA 121
           ASELDNSLT++               E+KQQM+ L  AIS ++GKGKLPA
Sbjct: 76  ASELDNSLTKECGVCGLVGHPNDKCPEVKQQMTQLATAISKIDGKGKLPA 125

[Close]

BLAST of PI0024091 vs. NCBI nr
Match: KAA0032798.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30356.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 2.1e-10
Identity = 45/72 (62.50%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 40  YSARKSSDRLKTFKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTRK-NEM 99
           YS   S DR K    A GA ADKTP EARE+I RMAENSQNFGNRASELDNSLT++ +E+
Sbjct: 99  YSGLLSFDRNKVDAAARGALADKTPIEARELILRMAENSQNFGNRASELDNSLTKEVSEL 158

Query: 100 KQQMSHLTNAIS 111
           K QM ++T  ++
Sbjct: 159 KSQMLNMTTLLT 170

[Close]

BLAST of PI0024091 vs. NCBI nr
Match: KAA0032001.1 (uncharacterized protein E6C27_scaffold134G00970 [Cucumis melo var. makuwa] >TYK16822.1 uncharacterized protein E5676_scaffold96G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 74.3 bits (181), Expect = 7.9e-10
Identity = 54/130 (41.54%), Postives = 64/130 (49.23%), Query Frame = 0


Query: 40  YSARKSSDRLKTFKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTR----- 99
           YS   S DR+     A GA  +KTPTEARE+ISRMAENSQ+FGNRASELD+SLT+     
Sbjct: 166 YSGLLSFDRITVDAAAGGALVNKTPTEARELISRMAENSQSFGNRASELDDSLTKECGVC 225

Query: 100 --------------------------------------------KNEMKQQMSHLTNAIS 121
                                                       + EMKQQM+ LT AIS
Sbjct: 226 GLVGHLNDKCPELIEDVNIVRRYDPHGTNLEDIIKALETNTLSFQQEMKQQMTQLTTAIS 285

[Close]

BLAST of PI0024091 vs. NCBI nr
Match: KAA0046065.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 73.9 bits (180), Expect = 1.0e-09
Identity = 52/124 (41.94%), Postives = 60/124 (48.39%), Query Frame = 0


Query: 52  FKQACGASADKTPTEAREIISRMAENSQNFGNRASELDNSLTR----------------- 111
           +  A GA ADKTP EARE+ISRMAENSQ+FGNRASELDNSLT+                 
Sbjct: 152 YAAAGGALADKTPIEARELISRMAENSQSFGNRASELDNSLTKEVSTPLKVTKCGVCSLV 211

Query: 112 --------------------------------------KNEMKQQMSHLTNAISILEGKG 121
                                                 + EMKQQM+ LT AIS ++GKG
Sbjct: 212 GHPNDKCPEHTQAPSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQLTTAISKMDGKG 271

The following BLAST results are available for this feature:

BLAST of PI0024091 vs.


Match Name	E-value	Identity	Description

BLAST of PI0024091 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V4B8	2.3e-15	77.27	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CJL9	3.4e-11	49.09	Transposon Ty3-I Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7SQH8	1.0e-10	62.50	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5D3CZ23	3.8e-10	41.54	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7TXC8	5.0e-10	41.94	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf...	[more]

BLAST of PI0024091 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061336.1	4.8e-15	77.27	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14690.1 retrotranspos...	[more]
KAA0040931.1	7.1e-11	49.09	Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa] >TYK10606.1 Tran...	[more]
KAA0032798.1	2.1e-10	62.50	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK30356.1 retrotranspos...	[more]
KAA0032001.1	7.9e-10	41.54	uncharacterized protein E6C27_scaffold134G00970 [Cucumis melo var. makuwa] >TYK1...	[more]
KAA0046065.1	1.0e-09	41.94	retrotransposon gag protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0024091 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 95..115
None	No IPR available	COILS	Coil	Coil	coord: 120..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024091.1	PI0024091.1	mRNA