PI0024016 (gene) Melon (PI 482460) v1

Overview


Name	PI0024016
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Nuclear nucleic acid-binding protein C1D
Location	chr07: 23905766 .. 23908197 (+)
RNA-Seq Expression	PI0024016
Synteny	PI0024016

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTTCATAATTAAAGGAAGAAAAAAAACCTCCGCACATTGAGATCGGAAAAACATCGGCCCAAACTGCCGCCGTAAACTTCCTCCAGTTCGGACCCAAAAGCCCTAACCGTCCATTTTCCCCTCTACGATTATCAACGACGACGGTCTGAGCTTCTCTCCGCCGTCGCCATCTCCTTCTAAGGATTTGAATCTCGTATCTTCGCTATCTCTTAGTGCCCCTGATAGAGACGGAGTTCAAAATTGGGGTCAAATATGGAGGGAGGTGTTCGAGATTTCGCTGTTGTGCCGGAGAAAGTGATGGATTCAGTGAAGACGACATTGGACAATGTAGAACAAGTCCAAACTCACCTTATTTCCTTCCTGTCTATCGCCGAGCCTGAAGTCCTTGCTCAAATGCAGCCTCTCCAACGGGCTCAGTCTACGCTTTTGCTTGCTAGAGTCACTACCACTCTCTTCGCATGTAAAATTTCGTTGATTACGAATAGTTCTTTATTATTAACTTTTTGTTGTTGTTTATTTTGTATTATTGAGGTGAAGTTTTTGTTTGTTTTTGGTGTAATTTGCAGTGAAGTTGAGGTGTAGCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTGTAATTATTCTCATACCTTGTATCTGGTGATTAAAGCTGAAATTTGCTCACATGGGTTATCATGTTATTCTCTTATTATTGTTCAAATGTTCATTCTTATTTTTTGTTATGCATGTAGGAGAGATTAAGCTTATATCAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGGTATGTTTGACCTCTGATTTTTTTGAGTTTATTTCACCATCGTTTCCTTTTTTTTTTTTTTTTTTTTGCTCCTTTCATGCTAGATTGTTAATTTTGCATTTCATTTTGTTCATGAAGCGCCATTGAAGCGTTCTACTACCTTGAACTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTAACTCAAGGTTGGTTGAATTTGTTTGCTTTTTTTTTTTTTATTTTTTTATTACTTTTTTTTTTGGGGGGGGGGGGGGAGGTCTGTGTCTGATTCCCTTCGATCAAGTAAATATTTCAATATTTTTCAGAGCAAAAGCTGAGTATGAGGGATATCAGTAGAGGAAAGGGGCAAAAAATGAAGCAATTAGAGAGGAACGTACAGAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAACTGCTGCTAAGGAATTTCTTGAGAAAGCAGCGCGTGAGCTTCTTGGTGATAGTAATGGAGGTTTACAGGGTCCATTGTGTGGAGATGCTTTAGATGACGATGCCCTGCAGGAGGACTGAATCCTGGATTTCACTTTGGTATCTGCTTATCACATTTATTTCTAATTTTGTCGTCCTTTTTTGATAAATGCAAGCTTTTCCACATGCTTGTTGACGGAATGAATTTTGATTTTCTTAATAAATTTTTCATTTTAGTTCTATTGCTCATTCTTGTAACACTGATTGTCGTTAGCTTGCTTAGCTTAATGGAATTGAGTTTGAAATTTAGAATTGTAGTCTGTTTATGGACGTCTTTGATGTGTTTGACATCGTGATATGTATGTATATCACGTTCTTTTTGTCATAGTTTATCAAAGGCTTGTCTAGATTAGCTTTCTTAGTGCTTAAAACCTTTAAAACACTTTTATAAACACTTAAAAAAGGCAGTCCAGACACCCTCTAAGCATTATTTTAGTGAAGTTTCAATTGCAATGAATATAGTTTTTCTTCTGTTGAACAGTTGAACTGCCTCCCCTTCCCTCAGCAAACTGAATGCCATAAATTAAACTAAAATGATTTTTATTCATTCCATGCAAACAAATCTAATACTTCCCTTCATATATTCACATTTATTTGCCATGTATTCCTCTATGTTTTAACAATTCCTCACCTTTACATCTTTCAGGAGTATGAAAACCAGGTTCCCTTGTGCCCTTAATTATCCCAACTCTCGAAGAATTGGTCCATTTTGAAGTTGGATTTGGACGTCTGTTTTTCCCTTTTTTCCCCTTCTCCTAGTTTCTCCTTAGGACATTAAATCGTTTTCCCTTTACTCTGTTTAGAAGTCTTTATATACATATGTGCATTTTGGAGTTTCAATCCCATCATAAGTTACTATTAGGACACTATTTGGTTGGAATTTTGGCACTCTACTCTTTCTCATGGGCTGATCTTCCTGGTTTTTTGTTTTCTTAATAGTGTGATCATATGAACAAGACACGATCTTGATCAAAGGAGTCTGTGCCTTTTACATGTAAAGTAGCCTACTTTGGTAGCTGACTTTCTAGTGTTTGTTAGGTCTGTATATCAGTCATCATCTTGTTACTTGAATTAGCCTTTTTTGCCATAAATTAATAATAGTATGTTCATTTTGATACCGCAA

mRNA sequence

GTTTTCATAATTAAAGGAAGAAAAAAAACCTCCGCACATTGAGATCGGAAAAACATCGGCCCAAACTGCCGCCGTAAACTTCCTCCAGTTCGGACCCAAAAGCCCTAACCGTCCATTTTCCCCTCTACGATTATCAACGACGACGGTCTGAGCTTCTCTCCGCCGTCGCCATCTCCTTCTAAGGATTTGAATCTCGTATCTTCGCTATCTCTTAGTGCCCCTGATAGAGACGGAGTTCAAAATTGGGGTCAAATATGGAGGGAGGTGTTCGAGATTTCGCTGTTGTGCCGGAGAAAGTGATGGATTCAGTGAAGACGACATTGGACAATGTAGAACAAGTCCAAACTCACCTTATTTCCTTCCTGTCTATCGCCGAGCCTGAAGTCCTTGCTCAAATGCAGCCTCTCCAACGGGCTCAGTCTACGCTTTTGCTTGCTAGAGTCACTACCACTCTCTTCGCATTGAAGTTGAGGTGTAGCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTGAGAGATTAAGCTTATATCAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGCGCCATTGAAGCGTTCTACTACCTTGAACTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTAACTCAAGAGCAAAAGCTGAGTATGAGGGATATCAGTAGAGGAAAGGGGCAAAAAATGAAGCAATTAGAGAGGAACGTACAGAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAACTGCTGCTAAGGAATTTCTTGAGAAAGCAGCGCGTGAGCTTCTTGGTGATAGTAATGGAGGTTTACAGGGTCCATTGTGTGGAGATGCTTTAGATGACGATGCCCTGCAGGAGGACTGAATCCTGGATTTCACTTTGGAGTATGAAAACCAGGTTCCCTTGTGCCCTTAATTATCCCAACTCTCGAAGAATTGGTCCATTTTGAAGTTGGATTTGGACGTCTGTTTTTCCCTTTTTTCCCCTTCTCCTAGTTTCTCCTTAGGACATTAAATCGTTTTCCCTTTACTCTGTTTAGAAGTCTTTATATACATATGTGCATTTTGGAGTTTCAATCCCATCATAAGTTACTATTAGGACACTATTTGGTTGGAATTTTGGCACTCTACTCTTTCTCATGGGCTGATCTTCCTGGTTTTTTGTTTTCTTAATAGTGTGATCATATGAACAAGACACGATCTTGATCAAAGGAGTCTGTGCCTTTTACATGTAAAGTAGCCTACTTTGGTAGCTGACTTTCTAGTGTTTGTTAGGTCTGTATATCAGTCATCATCTTGTTACTTGAATTAGCCTTTTTTGCCATAAATTAATAATAGTATGTTCATTTTGATACCGCAA

Coding sequence (CDS)

ATGGAGGGAGGTGTTCGAGATTTCGCTGTTGTGCCGGAGAAAGTGATGGATTCAGTGAAGACGACATTGGACAATGTAGAACAAGTCCAAACTCACCTTATTTCCTTCCTGTCTATCGCCGAGCCTGAAGTCCTTGCTCAAATGCAGCCTCTCCAACGGGCTCAGTCTACGCTTTTGCTTGCTAGAGTCACTACCACTCTCTTCGCATTGAAGTTGAGGTGTAGCGGAGTTCATCTTGATGATCATCCTATCAAATCAGAGCTTGAGAGATTAAGCTTATATCAAGACAAACTAGAACGGTTCATAGGCTTGAGTAAAGCGCCATTGAAGCGTTCTACTACCTTGAACTATCAAGCAGCTACTCGCTTTATTGAACATTCTCTGCCTGATCTAACTCAAGAGCAAAAGCTGAGTATGAGGGATATCAGTAGAGGAAAGGGGCAAAAAATGAAGCAATTAGAGAGGAACGTACAGAAGAAGAGGAAGTATCAGTCTTCTGAAAAACAATCTGTTCAAACTGCTGCTAAGGAATTTCTTGAGAAAGCAGCGCGTGAGCTTCTTGGTGATAGTAATGGAGGTTTACAGGGTCCATTGTGTGGAGATGCTTTAGATGACGATGCCCTGCAGGAGGACTGA

Protein sequence

MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSTLLLARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLEKAARELLGDSNGGLQGPLCGDALDDDALQED

Homology

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BLAST of PI0024016 vs. ExPASy Swiss-Prot
Match: Q3KPR1 (Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis OX=8355 GN=c1d PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 9.3e-09
Identity = 36/124 (29.03%), Postives = 70/124 (56.45%), Query Frame = 0


Query: 12  PEKVMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSTLLLARVTTTLFALK 71
           P ++ + +    ++V  V   L   +S++  E+L +++PL++A+  L+ A    +LF + 
Sbjct: 12  PTEIHEYLMAFENSVGSVDEMLKKMMSVSRSELLQKIEPLEQAKLDLVSAYTLNSLFWIY 71

Query: 72  LRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPDL 131
           L   G++  +HP+K ELER+  Y ++++          K++  L+  AA RFI+H+L D 
Sbjct: 72  LTTQGINPKEHPVKEELERIRGYMNRVKEI-----TDRKKAARLDKGAARRFIKHALCDP 130

Query: 132 TQEQ 136
           T E+
Sbjct: 132 TSEE 130

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BLAST of PI0024016 vs. ExPASy Swiss-Prot
Match: Q5ZHS3 (Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-08
Identity = 33/117 (28.21%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 12  PEKVMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSTLLLARVTTTLFALK 71
           P ++ D + T   ++  V   L + +S++  E+L +++PL++A+  L+ A    ++F + 
Sbjct: 11  PTEIHDYLTTFEKSLTSVDEMLKTMMSVSRSELLQKLEPLEQAKLDLVSAYTLNSMFWVY 70

Query: 72  LRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSL 129
           L   G++  +HP+K ELER+  Y +K++       A  K+++ L+  AA+RF+ ++L
Sbjct: 71  LATQGINPKEHPVKQELERIRTYMNKVKEI-----ADKKKASKLDKGAASRFVRNAL 122

[Close]

BLAST of PI0024016 vs. ExPASy Swiss-Prot
Match: Q5XJ97 (Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.5e-08
Identity = 36/135 (26.67%), Postives = 74/135 (54.81%), Query Frame = 0


Query: 2   EGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSTLLLA 61
           +  V D+   P ++ D++     ++  VQ  + + +S++  + L ++ PL++A+  L+ A
Sbjct: 4   DAAVEDY---PTEIEDNLNDFDSSLSSVQNMVQTLVSVSRSDRLLKLDPLEQAKLDLMSA 63

Query: 62  RVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAAT 121
               ++F + L   GV+  DHPIK ELER+  Y +K++      KA       ++ +AA+
Sbjct: 64  YALNSMFWMYLVTQGVNPKDHPIKQELERIRTYMNKVKEITDRRKA-----AHIDKEAAS 123

Query: 122 RFIEHSLPDLTQEQK 137
           RF+ ++L D   +++
Sbjct: 124 RFVRNALWDADDKKR 130

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BLAST of PI0024016 vs. ExPASy Swiss-Prot
Match: Q32PE4 (Nuclear nucleic acid-binding protein C1D OS=Bos taurus OX=9913 GN=C1D PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.9e-07
Identity = 31/117 (26.50%), Postives = 69/117 (58.97%), Query Frame = 0


Query: 12  PEKVMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSTLLLARVTTTLFALK 71
           P ++ + + T  +++  V   L + +S++  E+L ++ PL++A+  L+ A    ++F + 
Sbjct: 11  PVEIHEYLSTFENSIGAVDEMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY 70

Query: 72  LRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSL 129
           L   GV+  +HP+K ELER+ +Y ++++          K++  L+  AA+RF++++L
Sbjct: 71  LATQGVNPKEHPVKQELERIRVYMNRVKEI-----TDKKKAGKLDRGAASRFVKNAL 122

[Close]

BLAST of PI0024016 vs. ExPASy Swiss-Prot
Match: Q7TSU0 (Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus OX=10029 GN=C1D PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 3.9e-07
Identity = 33/135 (24.44%), Postives = 76/135 (56.30%), Query Frame = 0


Query: 12  PEKVMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSTLLLARVTTTLFALK 71
           P ++ +S+     ++  V   L + +S++  E+L ++ PL++A+  L+ A    ++F + 
Sbjct: 11  PVEIHESLSALESSLGAVDDMLKTMMSVSRNELLQKLDPLEQAKVDLVSAYTLNSMFWVY 70

Query: 72  LRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLPDL 131
           L   GV+  +HP+K ELER+ +Y ++++          K++  L+  AA+RF++++L + 
Sbjct: 71  LATQGVNPKEHPVKQELERIRVYMNRVKEI-----TDKKKAAKLDRGAASRFVKNALWEP 130

Query: 132 TQEQKLSMRDISRGK 147
            Q+   ++ +  + K
Sbjct: 131 KQKNTPNVANKGKSK 140

[Close]

BLAST of PI0024016 vs. ExPASy TrEMBL
Match: A0A0A0L118 (Nuclear nucleic acid-binding protein C1D OS=Cucumis sativus OX=3659 GN=Csa_4G651890 PE=3 SV=1)

HSP 1 Score: 391.7 bits (1005), Expect = 1.9e-105
Identity = 208/211 (98.58%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSTLLL 60
           MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEP+VLAQMQPLQRAQS LLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDALDDDALQED 212
           KAARELLGD NGGLQGPLCGDALDDDALQED
Sbjct: 181 KAARELLGDCNGGLQGPLCGDALDDDALQED 211

[Close]

BLAST of PI0024016 vs. ExPASy TrEMBL
Match: A0A5D3D8Y3 (Nuclear nucleic acid-binding protein C1D OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold134G001320 PE=3 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 6.1e-104
Identity = 205/211 (97.16%), Postives = 207/211 (98.10%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSTLLL 60
           MEGGVRDFAVVPEKVMDSVKTTLDNVE VQTHLISFLSIAEPEVLAQMQPLQRAQS LLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           ARVTTTLFALKLRC+GVHLDDHPIKSELERLSLY+DKLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDALDDDALQED 212
           KAARELLGDSNGGLQGPLCGDA DDDALQED
Sbjct: 181 KAARELLGDSNGGLQGPLCGDASDDDALQED 211

[Close]

BLAST of PI0024016 vs. ExPASy TrEMBL
Match: A0A1S3BUS6 (Nuclear nucleic acid-binding protein C1D OS=Cucumis melo OX=3656 GN=LOC103493742 PE=3 SV=1)

HSP 1 Score: 386.7 bits (992), Expect = 6.1e-104
Identity = 205/211 (97.16%), Postives = 207/211 (98.10%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSTLLL 60
           MEGGVRDFAVVPEKVMDSVKTTLDNVE VQTHLISFLSIAEPEVLAQMQPLQRAQS LLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           ARVTTTLFALKLRC+GVHLDDHPIKSELERLSLY+DKLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDALDDDALQED 212
           KAARELLGDSNGGLQGPLCGDA DDDALQED
Sbjct: 181 KAARELLGDSNGGLQGPLCGDASDDDALQED 211

[Close]

BLAST of PI0024016 vs. ExPASy TrEMBL
Match: A0A6J1FIR0 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111445751 PE=3 SV=1)

HSP 1 Score: 354.4 bits (908), Expect = 3.4e-94
Identity = 191/211 (90.52%), Postives = 199/211 (94.31%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSTLLL 60
           MEGGVR+ AVVPEKVMDSVK TLDNVEQVQTHLISFLSIAEP+VLAQM+PLQRAQS LLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           +R TTTLFALKLRCSGVH DDHPIKSELERLSLYQ+KLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQEQK  MRDISRGKG KMKQ+ER VQKKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDALDDDALQED 212
           KAARELLGD+NGGLQGPLCGDA +DD LQED
Sbjct: 181 KAARELLGDNNGGLQGPLCGDASNDD-LQED 210

[Close]

BLAST of PI0024016 vs. ExPASy TrEMBL
Match: A0A6J1F700 (Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111442695 PE=3 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.8e-93
Identity = 190/210 (90.48%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSTLLL 60
           MEGGVRD AVVPEKVMDSVKTTL+NVEQVQTHLIS LSIAEPEVLAQMQPLQRAQS LLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           ARVTTTLFALK+RCSGVH DDHPI +ELERLSLY+DKLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYEDKLERFIGLSKEPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQ+QK SMRDISRGKG KM+QLERN+QKKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDALDDDALQE 211
           KAARELLGDSNGGLQGPLCG A DD+ LQE
Sbjct: 181 KAARELLGDSNGGLQGPLCGVASDDE-LQE 209

[Close]

BLAST of PI0024016 vs. NCBI nr
Match: XP_004145496.1 (nuclear nucleic acid-binding protein C1D [Cucumis sativus] >KGN55423.1 hypothetical protein Csa_012234 [Cucumis sativus])

HSP 1 Score: 391.7 bits (1005), Expect = 3.9e-105
Identity = 208/211 (98.58%), Postives = 209/211 (99.05%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSTLLL 60
           MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEP+VLAQMQPLQRAQS LLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPDVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDALDDDALQED 212
           KAARELLGD NGGLQGPLCGDALDDDALQED
Sbjct: 181 KAARELLGDCNGGLQGPLCGDALDDDALQED 211

[Close]

BLAST of PI0024016 vs. NCBI nr
Match: XP_008452844.1 (PREDICTED: nuclear nucleic acid-binding protein C1D [Cucumis melo] >KAA0064576.1 nuclear nucleic acid-binding protein C1D [Cucumis melo var. makuwa] >TYK20014.1 nuclear nucleic acid-binding protein C1D [Cucumis melo var. makuwa])

HSP 1 Score: 386.7 bits (992), Expect = 1.3e-103
Identity = 205/211 (97.16%), Postives = 207/211 (98.10%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSTLLL 60
           MEGGVRDFAVVPEKVMDSVKTTLDNVE VQTHLISFLSIAEPEVLAQMQPLQRAQS LLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEHVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           ARVTTTLFALKLRC+GVHLDDHPIKSELERLSLY+DKLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKLRCNGVHLDDHPIKSELERLSLYEDKLERFIGLSKVPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDALDDDALQED 212
           KAARELLGDSNGGLQGPLCGDA DDDALQED
Sbjct: 181 KAARELLGDSNGGLQGPLCGDASDDDALQED 211

[Close]

BLAST of PI0024016 vs. NCBI nr
Match: XP_038897508.1 (nuclear nucleic acid-binding protein C1D [Benincasa hispida])

HSP 1 Score: 373.2 bits (957), Expect = 1.4e-99
Identity = 202/211 (95.73%), Postives = 204/211 (96.68%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSTLLL 60
           MEGGVRDFAVVPEKVMDSVK TLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQS LLL
Sbjct: 1   MEGGVRDFAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           A+VTTTLFALKLRCSGV LDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  AKVTTTLFALKLRCSGVLLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQEQKLSMRDISRGKG KMKQLERNVQKKRKYQS+EKQSVQTAAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGPKMKQLERNVQKKRKYQSNEKQSVQTAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDALDDDALQED 212
           KAARELLGDSNGGLQGPLCGDA  DD LQED
Sbjct: 181 KAARELLGDSNGGLQGPLCGDA-SDDGLQED 210

[Close]

BLAST of PI0024016 vs. NCBI nr
Match: XP_022939979.1 (nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata] >XP_022939980.1 nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata])

HSP 1 Score: 354.4 bits (908), Expect = 6.9e-94
Identity = 191/211 (90.52%), Postives = 199/211 (94.31%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSTLLL 60
           MEGGVR+ AVVPEKVMDSVK TLDNVEQVQTHLISFLSIAEP+VLAQM+PLQRAQS LLL
Sbjct: 1   MEGGVRESAVVPEKVMDSVKMTLDNVEQVQTHLISFLSIAEPDVLAQMRPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           +R TTTLFALKLRCSGVH DDHPIKSELERLSLYQ+KLERFIGLSKAPLKRSTTLNYQAA
Sbjct: 61  SRATTTLFALKLRCSGVHPDDHPIKSELERLSLYQEKLERFIGLSKAPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQEQK  MRDISRGKG KMKQ+ER VQKKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTQEQKQGMRDISRGKGPKMKQVERTVQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDALDDDALQED 212
           KAARELLGD+NGGLQGPLCGDA +DD LQED
Sbjct: 181 KAARELLGDNNGGLQGPLCGDASNDD-LQED 210

[Close]

BLAST of PI0024016 vs. NCBI nr
Match: KAG7024413.1 (Nuclear nucleic acid-binding protein C1D [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 352.4 bits (903), Expect = 2.6e-93
Identity = 191/210 (90.95%), Postives = 198/210 (94.29%), Query Frame = 0


Query: 1   MEGGVRDFAVVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSTLLL 60
           MEGGVRD AVVPEKVMDSVKTTL+NVEQVQTHLIS LSIAEPEVLAQMQPLQRAQS LLL
Sbjct: 1   MEGGVRDSAVVPEKVMDSVKTTLENVEQVQTHLISLLSIAEPEVLAQMQPLQRAQSMLLL 60

Query: 61  ARVTTTLFALKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAA 120
           ARVTTTLFALK+RCSGVH DDHPI +ELERLSLYQDKLERFIGLSK PLKRSTTLNYQAA
Sbjct: 61  ARVTTTLFALKVRCSGVHPDDHPINTELERLSLYQDKLERFIGLSKEPLKRSTTLNYQAA 120

Query: 121 TRFIEHSLPDLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLE 180
           TRFIEHSLPDLTQ+QK SMRDISRGKG KM+QLERN+QKKRKYQSSEKQSVQ AAKEFLE
Sbjct: 121 TRFIEHSLPDLTQDQKQSMRDISRGKGPKMQQLERNLQKKRKYQSSEKQSVQIAAKEFLE 180

Query: 181 KAARELLGDSNGGLQGPLCGDALDDDALQE 211
           KAARELLGDSNGGLQGPLCG A DD+ LQE
Sbjct: 181 KAARELLGDSNGGLQGPLCGVASDDE-LQE 209

[Close]

BLAST of PI0024016 vs. TAIR 10
Match: AT5G25080.1 (Sas10/Utp3/C1D family )

HSP 1 Score: 200.3 bits (508), Expect = 1.6e-51
Identity = 108/198 (54.55%), Postives = 151/198 (76.26%), Query Frame = 0


Query: 10  VVPEKVMDSVKTTLDNVEQVQTHLISFLSIAEPEVLAQMQPLQRAQSTLLLARVTTTLFA 69
           VVPE  +++V  TL  +++++  L   L++AEPEVLA MQPLQRA++  LLA  TTTL+ 
Sbjct: 15  VVPESAIEAVNQTLAYLKELKPQLEQMLTLAEPEVLAAMQPLQRAKTMHLLAEATTTLYE 74

Query: 70  LKLRCSGVHLDDHPIKSELERLSLYQDKLERFIGLSKAPLKRSTTLNYQAATRFIEHSLP 129
           L+LRC+GV  DDH +KSE+ER+++Y++K ++ +  SK PL+ +T LN QAATRFIEHSLP
Sbjct: 75  LRLRCTGVDPDDHRVKSEIERINVYREKFQKCVDQSKGPLRPTTVLNRQAATRFIEHSLP 134

Query: 130 DLTQEQKLSMRDISRGKGQKMKQLERNVQKKRKYQSSEKQSVQTAAKEFLEKAARELLGD 189
           DLT  QK S+RD+S+G+  +++  E +  +KRKYQS+EKQSVQ+AAK+FLEKAARE++G 
Sbjct: 135 DLTSTQKQSIRDLSKGEKSRIRYSETSA-RKRKYQSNEKQSVQSAAKDFLEKAAREIIGH 194

Query: 190 SNGGLQGPL--CGDALDD 206
           +  GL+GPL    D  DD
Sbjct: 195 NENGLKGPLVAAADGSDD 211

The following BLAST results are available for this feature:

BLAST of PI0024016 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q3KPR1	9.3e-09	29.03	Nuclear nucleic acid-binding protein C1D OS=Xenopus laevis OX=8355 GN=c1d PE=2 S...	[more]
Q5ZHS3	2.1e-08	28.21	Nuclear nucleic acid-binding protein C1D OS=Gallus gallus OX=9031 GN=C1D PE=2 SV...	[more]
Q5XJ97	3.5e-08	26.67	Nuclear nucleic acid-binding protein C1D OS=Danio rerio OX=7955 GN=c1d PE=2 SV=1	[more]
Q32PE4	3.9e-07	26.50	Nuclear nucleic acid-binding protein C1D OS=Bos taurus OX=9913 GN=C1D PE=2 SV=1	[more]
Q7TSU0	3.9e-07	24.44	Nuclear nucleic acid-binding protein C1D OS=Cricetulus griseus OX=10029 GN=C1D P...	[more]

BLAST of PI0024016 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L118	1.9e-105	98.58	Nuclear nucleic acid-binding protein C1D OS=Cucumis sativus OX=3659 GN=Csa_4G651...	[more]
A0A5D3D8Y3	6.1e-104	97.16	Nuclear nucleic acid-binding protein C1D OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A1S3BUS6	6.1e-104	97.16	Nuclear nucleic acid-binding protein C1D OS=Cucumis melo OX=3656 GN=LOC103493742...	[more]
A0A6J1FIR0	3.4e-94	90.52	Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1F700	2.8e-93	90.48	Nuclear nucleic acid-binding protein C1D OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of PI0024016 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145496.1	3.9e-105	98.58	nuclear nucleic acid-binding protein C1D [Cucumis sativus] >KGN55423.1 hypotheti...	[more]
XP_008452844.1	1.3e-103	97.16	PREDICTED: nuclear nucleic acid-binding protein C1D [Cucumis melo] >KAA0064576.1...	[more]
XP_038897508.1	1.4e-99	95.73	nuclear nucleic acid-binding protein C1D [Benincasa hispida]	[more]
XP_022939979.1	6.9e-94	90.52	nuclear nucleic acid-binding protein C1D-like [Cucurbita moschata] >XP_022939980...	[more]
KAG7024413.1	2.6e-93	90.95	Nuclear nucleic acid-binding protein C1D [Cucurbita argyrosperma subsp. argyrosp...	[more]

BLAST of PI0024016 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G25080.1	1.6e-51	54.55	Sas10/Utp3/C1D family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007146	Sas10/Utp3/C1D	PFAM	PF04000	Sas10_Utp3	coord: 21..97 e-value: 2.7E-7 score: 31.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 188..211
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..166
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 141..171
None	No IPR available	PANTHER	PTHR15341:SF3	NUCLEAR NUCLEIC ACID-BINDING PROTEIN C1D	coord: 10..198
IPR011082	Exosome-associated factor Rrp47/DNA strand repair C1D	PANTHER	PTHR15341	SUN-COR STEROID HORMONE RECEPTOR CO-REPRESSOR	coord: 10..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0024016.1	PI0024016.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0010468	regulation of gene expression
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0000178	exosome (RNase complex)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003723	RNA binding