PI0023981 (gene) Melon (PI 482460) v1

Overview
NamePI0023981
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionGlutamate receptor 3.6
Locationchr07: 9696833 .. 9697309 (-)
RNA-Seq ExpressionPI0023981
SyntenyPI0023981
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTGAAACCTTTGGCTTTTTTTGGTCCCCACCATTTTTTACCTTTTGTTTTCCTTTGTTTTTCTTTTGTTTCCTTTTGTTTCCATTTCTTCTTCTACATCTTCTTCACTATTATCACTGTCAATTTTCGATGACTATTGCTCCAACAAATACTGCCATCAACACTTTGTTTGGACATCCTTTGGGCACAACTCTCTCTGTTAAGCTTGATAACAAAAATTTTGGACTATGGAGAGGCATGGCACTTGCTGTTCTTCGAGGCCAAAAGGCCGATGGATATGTCCTTGGCACAAAAACTCAACCACCTCAGTTCTTAATGTCAAATGGTGAAGCTTGTTCTTCTACTTCCACTATCAACCCAGTCTTTGAAGAATGGACAGCAACAAATCAAGCTCTCCTTGGATGGTTACTTGGTTCAATGATTCCATCTGTGGCATCAGAGGTCGTTAATTTGACATCGTCAAAAGAGGTATAG

mRNA sequence

ATGTTTGAAACCTTTGGCTTTTTTTGGTCCCCACCATTTTTTACCTTTTGTTTTCCTTTGTTTTTCTTTTGTTTCCTTTTGTTTCCATTTCTTCTTCTACATCTTCTTCACTATTATCACTGTCAATTTTCGATGACTATTGCTCCAACAAATACTGCCATCAACACTTTGTTTGGACATCCTTTGGGCACAACTCTCTCTGTTAAGCTTGATAACAAAAATTTTGGACTATGGAGAGGCATGGCACTTGCTGTTCTTCGAGGCCAAAAGGCCGATGGATATGTCCTTGGCACAAAAACTCAACCACCTCAGTTCTTAATGTCAAATGGTGAAGCTTGTTCTTCTACTTCCACTATCAACCCAGTCTTTGAAGAATGGACAGCAACAAATCAAGCTCTCCTTGGATGGTTACTTGGTTCAATGATTCCATCTGTGGCATCAGAGGTCGTTAATTTGACATCGTCAAAAGAGGTATAG

Coding sequence (CDS)

ATGTTTGAAACCTTTGGCTTTTTTTGGTCCCCACCATTTTTTACCTTTTGTTTTCCTTTGTTTTTCTTTTGTTTCCTTTTGTTTCCATTTCTTCTTCTACATCTTCTTCACTATTATCACTGTCAATTTTCGATGACTATTGCTCCAACAAATACTGCCATCAACACTTTGTTTGGACATCCTTTGGGCACAACTCTCTCTGTTAAGCTTGATAACAAAAATTTTGGACTATGGAGAGGCATGGCACTTGCTGTTCTTCGAGGCCAAAAGGCCGATGGATATGTCCTTGGCACAAAAACTCAACCACCTCAGTTCTTAATGTCAAATGGTGAAGCTTGTTCTTCTACTTCCACTATCAACCCAGTCTTTGAAGAATGGACAGCAACAAATCAAGCTCTCCTTGGATGGTTACTTGGTTCAATGATTCCATCTGTGGCATCAGAGGTCGTTAATTTGACATCGTCAAAAGAGGTATAG

Protein sequence

MFETFGFFWSPPFFTFCFPLFFFCFLLFPFLLLHLLHYYHCQFSMTIAPTNTAINTLFGHPLGTTLSVKLDNKNFGLWRGMALAVLRGQKADGYVLGTKTQPPQFLMSNGEACSSTSTINPVFEEWTATNQALLGWLLGSMIPSVASEVVNLTSSKEV
Homology
BLAST of PI0023981 vs. ExPASy TrEMBL
Match: A0A6J1DU77 (uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.7e-29
Identity = 68/105 (64.76%), Postives = 80/105 (76.19%), Query Frame = 0

Query: 55  NTLFGHPLGTTLSVKLDNKNFGLWRGMALAVLRGQKADGYVLGTKTQPPQFLMS-NGEAC 114
           NT FGHPLGT L+VKLD+KN+ LWRGM LAVLRGQK DGYVLGT  +PPQFL+S   E  
Sbjct: 31  NTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGT 90

Query: 115 SSTSTINPVFEEWTATNQALLGWLLGSMIPSVASEVVNLTSSKEV 159
           S    +NP + EW A +QALLGWL GSM PS+A +VV+  SS+EV
Sbjct: 91  SDHLQVNPEYVEWQAVDQALLGWLFGSMTPSIACDVVDFRSSREV 135

BLAST of PI0023981 vs. ExPASy TrEMBL
Match: A0A6J1DTZ7 (uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.7e-29
Identity = 68/105 (64.76%), Postives = 80/105 (76.19%), Query Frame = 0

Query: 55  NTLFGHPLGTTLSVKLDNKNFGLWRGMALAVLRGQKADGYVLGTKTQPPQFLMS-NGEAC 114
           NT FGHPLGT L+VKLD+KN+ LWRGM LAVLRGQK DGYVLGT  +PPQFL+S   E  
Sbjct: 31  NTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGT 90

Query: 115 SSTSTINPVFEEWTATNQALLGWLLGSMIPSVASEVVNLTSSKEV 159
           S    +NP + EW A +QALLGWL GSM PS+A +VV+  SS+EV
Sbjct: 91  SDHLQVNPEYVEWQAVDQALLGWLFGSMTPSIACDVVDFRSSREV 135

BLAST of PI0023981 vs. ExPASy TrEMBL
Match: A0A6J1CPQ7 (ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LOC111013443 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 4.5e-27
Identity = 61/107 (57.01%), Postives = 78/107 (72.90%), Query Frame = 0

Query: 52  TAINTLFGHPLGTTLSVKLDNKNFGLWRGMALAVLRGQKADGYVLGTKTQPPQFLMSNGE 111
           +AIN  FGHPL T L+VKLD+KN+ LW+GM LAVL GQK DGYVL TKT P ++  +  +
Sbjct: 21  SAINISFGHPLSTALTVKLDDKNYTLWKGMVLAVLPGQKVDGYVLRTKTCPSKYTTTTSD 80

Query: 112 ACSSTSTINPVFEEWTATNQALLGWLLGSMIPSVASEVVNLTSSKEV 159
                 T+NP +EEW+A +QA  GWL GSM PS+A++VVNL +S EV
Sbjct: 81  TGMLEPTLNPAYEEWSAVDQAFCGWLFGSMTPSIAADVVNLQTSNEV 127

BLAST of PI0023981 vs. ExPASy TrEMBL
Match: A0A0A0LXU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G477520 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.0e-23
Identity = 58/76 (76.32%), Postives = 64/76 (84.21%), Query Frame = 0

Query: 44  SMTIAPTNTAINTLFGHPLGTTLSVKLDNKNFGLWRGMALAVLRGQKADGYVLGTKTQPP 103
           S+TIAPT TAINT FGHPL T+LS+KLD+K FGLWRGM LAVLRGQK DGYVLG K+QPP
Sbjct: 19  SVTIAPTYTAINTSFGHPLDTSLSIKLDDKKFGLWRGMVLAVLRGQKVDGYVLGAKSQPP 78

Query: 104 QFLMSNGEACSSTSTI 120
           Q L SN EA SSTS +
Sbjct: 79  QSLKSNDEASSSTSVL 94

BLAST of PI0023981 vs. ExPASy TrEMBL
Match: A0A2Z6N0W9 (Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_258780 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 9.4e-17
Identity = 47/97 (48.45%), Postives = 68/97 (70.10%), Query Frame = 0

Query: 62  LGTTLSVKLDNKNFGLWRGMALAVLRGQKADGYVLGTKTQPPQFLMSNGEACSSTSTINP 121
           L +T+SVKLD  N+ LW+ + L ++RG K DGY+LGTK  P QFL S      +T+ INP
Sbjct: 41  LPSTVSVKLDRDNYPLWKSLVLPLIRGCKYDGYMLGTKQCPNQFLTST----DNTNKINP 100

Query: 122 VFEEWTATNQALLGWLLGSMIPSVASEVVNLTSSKEV 159
            FE+W A +QALLGWL+ SM   +A++V++  +SK++
Sbjct: 101 DFEDWQANDQALLGWLMNSMTVDIATQVLHCETSKQL 133

BLAST of PI0023981 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia])

HSP 1 Score: 139.0 bits (349), Expect = 3.4e-29
Identity = 68/105 (64.76%), Postives = 80/105 (76.19%), Query Frame = 0

Query: 55  NTLFGHPLGTTLSVKLDNKNFGLWRGMALAVLRGQKADGYVLGTKTQPPQFLMS-NGEAC 114
           NT FGHPLGT L+VKLD+KN+ LWRGM LAVLRGQK DGYVLGT  +PPQFL+S   E  
Sbjct: 31  NTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGT 90

Query: 115 SSTSTINPVFEEWTATNQALLGWLLGSMIPSVASEVVNLTSSKEV 159
           S    +NP + EW A +QALLGWL GSM PS+A +VV+  SS+EV
Sbjct: 91  SDHLQVNPEYVEWQAVDQALLGWLFGSMTPSIACDVVDFRSSREV 135

BLAST of PI0023981 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia])

HSP 1 Score: 139.0 bits (349), Expect = 3.4e-29
Identity = 68/105 (64.76%), Postives = 80/105 (76.19%), Query Frame = 0

Query: 55  NTLFGHPLGTTLSVKLDNKNFGLWRGMALAVLRGQKADGYVLGTKTQPPQFLMS-NGEAC 114
           NT FGHPLGT L+VKLD+KN+ LWRGM LAVLRGQK DGYVLGT  +PPQFL+S   E  
Sbjct: 31  NTSFGHPLGTVLTVKLDDKNYSLWRGMVLAVLRGQKFDGYVLGTLAKPPQFLVSPETEGT 90

Query: 115 SSTSTINPVFEEWTATNQALLGWLLGSMIPSVASEVVNLTSSKEV 159
           S    +NP + EW A +QALLGWL GSM PS+A +VV+  SS+EV
Sbjct: 91  SDHLQVNPEYVEWQAVDQALLGWLFGSMTPSIACDVVDFRSSREV 135

BLAST of PI0023981 vs. NCBI nr
Match: XP_022143579.1 (ankyrin repeat-containing protein NPR4-like [Momordica charantia])

HSP 1 Score: 131.0 bits (328), Expect = 9.3e-27
Identity = 61/107 (57.01%), Postives = 78/107 (72.90%), Query Frame = 0

Query: 52  TAINTLFGHPLGTTLSVKLDNKNFGLWRGMALAVLRGQKADGYVLGTKTQPPQFLMSNGE 111
           +AIN  FGHPL T L+VKLD+KN+ LW+GM LAVL GQK DGYVL TKT P ++  +  +
Sbjct: 21  SAINISFGHPLSTALTVKLDDKNYTLWKGMVLAVLPGQKVDGYVLRTKTCPSKYTTTTSD 80

Query: 112 ACSSTSTINPVFEEWTATNQALLGWLLGSMIPSVASEVVNLTSSKEV 159
                 T+NP +EEW+A +QA  GWL GSM PS+A++VVNL +S EV
Sbjct: 81  TGMLEPTLNPAYEEWSAVDQAFCGWLFGSMTPSIAADVVNLQTSNEV 127

BLAST of PI0023981 vs. NCBI nr
Match: KGN65642.1 (hypothetical protein Csa_019906 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-23
Identity = 58/76 (76.32%), Postives = 64/76 (84.21%), Query Frame = 0

Query: 44  SMTIAPTNTAINTLFGHPLGTTLSVKLDNKNFGLWRGMALAVLRGQKADGYVLGTKTQPP 103
           S+TIAPT TAINT FGHPL T+LS+KLD+K FGLWRGM LAVLRGQK DGYVLG K+QPP
Sbjct: 19  SVTIAPTYTAINTSFGHPLDTSLSIKLDDKKFGLWRGMVLAVLRGQKVDGYVLGAKSQPP 78

Query: 104 QFLMSNGEACSSTSTI 120
           Q L SN EA SSTS +
Sbjct: 79  QSLKSNDEASSSTSVL 94

BLAST of PI0023981 vs. NCBI nr
Match: GAU21262.1 (hypothetical protein TSUD_286720 [Trifolium subterraneum])

HSP 1 Score: 96.7 bits (239), Expect = 1.9e-16
Identity = 47/108 (43.52%), Postives = 74/108 (68.52%), Query Frame = 0

Query: 51  NTAINTLFGHPLGTTLSVKLDNKNFGLWRGMALAVLRGQKADGYVLGTKTQPPQFLMSNG 110
           ++A NT   + L TT+SVKLD  N+ LW+ + L ++RG + DGY+LGTK  P +F+ +N 
Sbjct: 2   SSAANTNQKNDLPTTVSVKLDRDNYPLWKSLVLPLIRGCRLDGYMLGTKECPEKFVTTN- 61

Query: 111 EACSSTSTINPVFEEWTATNQALLGWLLGSMIPSVASEVVNLTSSKEV 159
              ++T  +NP +EEW A +QALLGWL  SM   +A+++++  +SKE+
Sbjct: 62  ---NTTKKVNPEYEEWIAHDQALLGWLRNSMAIDIATQLLHCETSKEL 105

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DU771.7e-2964.76uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DTZ71.7e-2964.76uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A6J1CPQ74.5e-2757.01ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LO... [more]
A0A0A0LXU01.0e-2376.32Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G477520 PE=4 SV=1[more]
A0A2Z6N0W99.4e-1748.45Uncharacterized protein OS=Trifolium subterraneum OX=3900 GN=TSUD_258780 PE=4 SV... [more]
Match NameE-valueIdentityDescription
XP_022157748.13.4e-2964.76uncharacterized protein LOC111024384 isoform X1 [Momordica charantia][more]
XP_022157750.13.4e-2964.76uncharacterized protein LOC111024384 isoform X2 [Momordica charantia][more]
XP_022143579.19.3e-2757.01ankyrin repeat-containing protein NPR4-like [Momordica charantia][more]
KGN65642.12.1e-2376.32hypothetical protein Csa_019906 [Cucumis sativus][more]
GAU21262.11.9e-1643.52hypothetical protein TSUD_286720 [Trifolium subterraneum][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0023981.1PI0023981.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane