PI0023972 (gene) Melon (PI 482460) v1

Overview


Name	PI0023972
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	protein RALF-like 30
Location	chr02: 11609909 .. 11610443 (-)
RNA-Seq Expression	PI0023972
Synteny	PI0023972

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAGCAAGAAAGAAGAGTTTGAGACAAAGAAGAAACAAAGAAGATGAAGTCATGGTTGATATGTTTTGCTTTAATTAGCATGTTGGTGACGGGCCATGAAGTAGCAGCAGAGACAAAGTTTCTTACATTTCTTGATCCTTGCCTACAACCTCTTCCACCTTCAAGTTGTTATAAATCTAAACCTGTGGAATCTGCAAACCCATATAATAGAGGCTGCTCTGCAATCCATCGATGTCGTGGAGGATGATACAAATTCATATTTTAAACTCTATTTGTCTCTAAACATATAGAGGAAAAGTAAATTTGTTGTGAAAACTCAACTATATAATATTTTAATTATGTAAATCTTTCCATGCAACGAAAGTAAAAATATAAAGATGAAAGTACGTAGTTATACTGAAAATTTCAATAAATTTTCGACTATGCATATACAGTAAAAAAGTATTAATTAAGTTATAGATTAAGCTAATAAACATTTGGATTTATTATTAATTTGTTAATGATTAAGTTAGGTCACATTATATAGATGTTTG

mRNA sequence

CAAAAGCAAGAAAGAAGAGTTTGAGACAAAGAAGAAACAAAGAAGATGAAGTCATGGTTGATATGTTTTGCTTTAATTAGCATGTTGGTGACGGGCCATGAAGTAGCAGCAGAGACAAAGTTTCTTACATTTCTTGATCCTTGCCTACAACCTCTTCCACCTTCAAGTTGTTATAAATCTAAACCTGTGGAATCTGCAAACCCATATAATAGAGGCTGCTCTGCAATCCATCGATGTCGTGGAGGATGATACAAATTCATATTTTAAACTCTATTTGTCTCTAAACATATAGAGGAAAAGTAAATTTGTTGTGAAAACTCAACTATATAATATTTTAATTATGTAAATCTTTCCATGCAACGAAAGTAAAAATATAAAGATGAAAGTACGTAGTTATACTGAAAATTTCAATAAATTTTCGACTATGCATATACAGTAAAAAAGTATTAATTAAGTTATAGATTAAGCTAATAAACATTTGGATTTATTATTAATTTGTTAATGATTAAGTTAGGTCACATTATATAGATGTTTG

Coding sequence (CDS)

ATGAAGTCATGGTTGATATGTTTTGCTTTAATTAGCATGTTGGTGACGGGCCATGAAGTAGCAGCAGAGACAAAGTTTCTTACATTTCTTGATCCTTGCCTACAACCTCTTCCACCTTCAAGTTGTTATAAATCTAAACCTGTGGAATCTGCAAACCCATATAATAGAGGCTGCTCTGCAATCCATCGATGTCGTGGAGGATGA

Protein sequence

MKSWLICFALISMLVTGHEVAAETKFLTFLDPCLQPLPPSSCYKSKPVESANPYNRGCSAIHRCRGG

Homology

[Close]

BLAST of PI0023972 vs. ExPASy Swiss-Prot
Match: O64466 (Protein RALF-like 11 OS=Arabidopsis thaliana OX=3702 GN=RALFL11 PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 9.8e-05
Identity = 26/71 (36.62%), Postives = 36/71 (50.70%), Query Frame = 0


Query: 1  MKSWLICFALISMLVTGHEVAAETKFLTF--LDPCLQPLPPSSC----YKSKPVESANPY 60
          MK+WLIC  +I   V    V +   ++ +  ++ C  P PP  C     + K     N Y
Sbjct: 1  MKAWLICLLVICAAVIAEPVESR-NYIEYGAINKCAGPNPPPGCNPPGAEQKNPTPVNEY 60

Query: 61 NRGCSAIHRCR 66
          +RGCS IHRCR
Sbjct: 61 SRGCSKIHRCR 70

[Close]

BLAST of PI0023972 vs. ExPASy Swiss-Prot
Match: F4ISE2 (Protein RALF-like 13 OS=Arabidopsis thaliana OX=3702 GN=RALFL13 PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 1.7e-04
Identity = 25/71 (35.21%), Postives = 36/71 (50.70%), Query Frame = 0


Query: 1  MKSWLICFALISMLVTGHEVAAETKFLTF--LDPCLQPLPPSSC----YKSKPVESANPY 60
          MK+W+IC  +I   V    V +   ++ +  ++ C  P PP  C     + K     N Y
Sbjct: 1  MKAWVICLLVICAAVIAEPVESR-NYIEYGAINKCAGPNPPPGCNPPGAEQKNPNPVNEY 60

Query: 61 NRGCSAIHRCR 66
          +RGCS IHRCR
Sbjct: 61 SRGCSKIHRCR 70

[Close]

BLAST of PI0023972 vs. ExPASy TrEMBL
Match: A0A1S4DY33 (protein RALF-like 30 OS=Cucumis melo OX=3656 GN=LOC107991083 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 6.0e-21
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1  MKSWLICFALISMLVTGHEVAAETKFLTFLDPCLQPLPPSSCYKSKPVESANPYNRGCSA 60
          MKSWLICFAL+SMLV GHEVAA+TKFL FLDPCLQP PP SCYK + V+S   Y+RGCS 
Sbjct: 1  MKSWLICFALLSMLVMGHEVAAKTKFLKFLDPCLQPSPPRSCYKHERVDSPIAYDRGCSP 60

Query: 61 IHRCRGG 68
          I RCRGG
Sbjct: 61 ILRCRGG 67

[Close]

BLAST of PI0023972 vs. ExPASy TrEMBL
Match: A0A0A0LZK3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G610770 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.3e-19
Identity = 48/67 (71.64%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 1   MKSWLICFALISMLVTGHEVAAETKFLTFLDPCLQPLPPSSCYKSKPVESANPYNRGCSA 60
           MKSWLICFAL+SMLV  HEVAAE KFL F D CLQP PP SCYK +  +S  PY+RGCS 
Sbjct: 34  MKSWLICFALLSMLVMSHEVAAEGKFLNFSDLCLQPSPPKSCYKDERADSPIPYDRGCSP 93

Query: 61  IHRCRGG 68
           I RCRGG
Sbjct: 94  ILRCRGG 100

[Close]

BLAST of PI0023972 vs. ExPASy TrEMBL
Match: A0A0A0LI94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 7.3e-19
Identity = 48/67 (71.64%), Postives = 51/67 (76.12%), Query Frame = 0


Query: 1  MKSWLICFALISMLVTGHEVAAETKFLTFLDPCLQPLPPSSCYKSKPVESANPYNRGCSA 60
          MKSWLIC ALI MLV G EVAAETK L F+DPC QP PP +C     VE ANPYNR CSA
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVEEANPYNRDCSA 60

Query: 61 IHRCRGG 68
          I+RCRGG
Sbjct: 61 INRCRGG 67

[Close]

BLAST of PI0023972 vs. ExPASy TrEMBL
Match: A0A6J1G7J2 (protein RALF-like 10 OS=Cucurbita moschata OX=3662 GN=LOC111451581 PE=3 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 7.1e-14
Identity = 42/67 (62.69%), Postives = 45/67 (67.16%), Query Frame = 0


Query: 1  MKSWLICFALISMLVTGHEVAAETKFLTFLDPCLQPLPPSSCYKSKPVESANPYNRGCSA 60
          M+SWLIC  LI MLV   +VA+ETKFL F DPC QP PP  C     V  ANPY RGCS 
Sbjct: 1  MRSWLICLVLIGMLVVSQDVASETKFLKFPDPCQQPNPPPGCSIGNAV-PANPYRRGCSK 60

Query: 61 IHRCRGG 68
          I RCRGG
Sbjct: 61 ITRCRGG 66

[Close]

BLAST of PI0023972 vs. ExPASy TrEMBL
Match: A0A0A0M0X3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.3e-12
Identity = 41/67 (61.19%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 1  MKSWLICFALISMLVTGHEVAAETKFLTFLDPCLQPLPPSSC-YKSKPVESANPYNRGCS 60
          MKSWLIC   ISMLV   EV A+T  L F +PC  P PP SC  K K     NPY+RGCS
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS 60

Query: 61 AIHRCRG 67
          AIHRCRG
Sbjct: 61 AIHRCRG 67

[Close]

BLAST of PI0023972 vs. NCBI nr
Match: XP_016900883.1 (PREDICTED: protein RALF-like 30 [Cucumis melo])

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 51/67 (76.12%), Postives = 56/67 (83.58%), Query Frame = 0


Query: 1  MKSWLICFALISMLVTGHEVAAETKFLTFLDPCLQPLPPSSCYKSKPVESANPYNRGCSA 60
          MKSWLICFAL+SMLV GHEVAA+TKFL FLDPCLQP PP SCYK + V+S   Y+RGCS 
Sbjct: 1  MKSWLICFALLSMLVMGHEVAAKTKFLKFLDPCLQPSPPRSCYKHERVDSPIAYDRGCSP 60

Query: 61 IHRCRGG 68
          I RCRGG
Sbjct: 61 ILRCRGG 67

[Close]

BLAST of PI0023972 vs. NCBI nr
Match: KGN66449.1 (hypothetical protein Csa_006867 [Cucumis sativus])

HSP 1 Score: 102.4 bits (254), Expect = 1.5e-18
Identity = 48/67 (71.64%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 1   MKSWLICFALISMLVTGHEVAAETKFLTFLDPCLQPLPPSSCYKSKPVESANPYNRGCSA 60
           MKSWLICFAL+SMLV  HEVAAE KFL F D CLQP PP SCYK +  +S  PY+RGCS 
Sbjct: 34  MKSWLICFALLSMLVMSHEVAAEGKFLNFSDLCLQPSPPKSCYKDERADSPIPYDRGCSP 93

Query: 61  IHRCRGG 68
           I RCRGG
Sbjct: 94  ILRCRGG 100

[Close]

BLAST of PI0023972 vs. NCBI nr
Match: XP_038877580.1 (protein RALF-like 11 [Benincasa hispida])

HSP 1 Score: 99.8 bits (247), Expect = 9.8e-18
Identity = 47/67 (70.15%), Postives = 50/67 (74.63%), Query Frame = 0


Query: 1  MKSWLICFALISMLVTGHEVAAETKFLTFLDPCLQPLPPSSCYKSKPVESANPYNRGCSA 60
          MKSWLIC   ISMLV G  VAAE K+L FLDPC QP PP +C + K    ANPYNRGCSA
Sbjct: 1  MKSWLICVVFISMLVVGPGVAAEKKYLQFLDPCNQPNPPPTCSEVKEQVEANPYNRGCSA 60

Query: 61 IHRCRGG 68
          IHRCRGG
Sbjct: 61 IHRCRGG 67

[Close]

BLAST of PI0023972 vs. NCBI nr
Match: XP_023533089.1 (protein RALF-like 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 88.2 bits (217), Expect = 2.9e-14
Identity = 44/67 (65.67%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 1  MKSWLICFALISMLVTGHEVAAETKFLTFLDPCLQPLPPSSCYKSKPVESANPYNRGCSA 60
          M+SWLIC  LISMLV   EVA+ETKFL F DPC QP PP  C     V  ANPY RGCS 
Sbjct: 1  MRSWLICIVLISMLVVSQEVASETKFLKFPDPCQQPNPPLGCSIGNAV-PANPYRRGCSK 60

Query: 61 IHRCRGG 68
          I RCRGG
Sbjct: 61 ITRCRGG 66

[Close]

BLAST of PI0023972 vs. NCBI nr
Match: KAE8651825.1 (hypothetical protein Csa_006496, partial [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 8.5e-14
Identity = 40/57 (70.18%), Postives = 43/57 (75.44%), Query Frame = 0


Query: 1  MKSWLICFALISMLVTGHEVAAETKFLTFLDPCLQPLPPSSCYKSKPVESANPYNRG 58
          MKSWLIC ALI MLV G EVAAETK+L F+DPC QP PP +C     VE ANPYNRG
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKYLKFIDPCNQPSPPPTCPNRDKVEEANPYNRG 57

[Close]

BLAST of PI0023972 vs. TAIR 10
Match: AT2G19030.1 (ralf-like 11 )

HSP 1 Score: 47.0 bits (110), Expect = 7.0e-06
Identity = 26/71 (36.62%), Postives = 36/71 (50.70%), Query Frame = 0


Query: 1  MKSWLICFALISMLVTGHEVAAETKFLTF--LDPCLQPLPPSSC----YKSKPVESANPY 60
          MK+WLIC  +I   V    V +   ++ +  ++ C  P PP  C     + K     N Y
Sbjct: 1  MKAWLICLLVICAAVIAEPVESR-NYIEYGAINKCAGPNPPPGCNPPGAEQKNPTPVNEY 60

Query: 61 NRGCSAIHRCR 66
          +RGCS IHRCR
Sbjct: 61 SRGCSKIHRCR 70

[Close]

BLAST of PI0023972 vs. TAIR 10
Match: AT2G19045.1 (RALF-like 13 )

HSP 1 Score: 46.2 bits (108), Expect = 1.2e-05
Identity = 25/71 (35.21%), Postives = 36/71 (50.70%), Query Frame = 0


Query: 1  MKSWLICFALISMLVTGHEVAAETKFLTF--LDPCLQPLPPSSC----YKSKPVESANPY 60
          MK+W+IC  +I   V    V +   ++ +  ++ C  P PP  C     + K     N Y
Sbjct: 1  MKAWVICLLVICAAVIAEPVESR-NYIEYGAINKCAGPNPPPGCNPPGAEQKNPNPVNEY 60

Query: 61 NRGCSAIHRCR 66
          +RGCS IHRCR
Sbjct: 61 SRGCSKIHRCR 70

[Close]

BLAST of PI0023972 vs. TAIR 10
Match: AT2G19020.1 (ralf-like 10 )

HSP 1 Score: 43.5 bits (101), Expect = 7.7e-05
Identity = 26/71 (36.62%), Postives = 34/71 (47.89%), Query Frame = 0


Query: 1  MKSWLICFALISMLVTGHEVAAETKFLTF--LDPCLQPLPPSSCY----KSKPVESANPY 60
          MK+ +IC  +I   V    V +  K L +  +  C  P PP  CY    + K    AN Y
Sbjct: 1  MKALVICLLVIFAAVIAVPVESRRKHLDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEY 60

Query: 61 NRGCSAIHRCR 66
           RGCS I RC+
Sbjct: 61 RRGCSKITRCK 71

[Close]

BLAST of PI0023972 vs. TAIR 10
Match: AT2G19040.1 (RALF-like 12 )

HSP 1 Score: 42.0 bits (97), Expect = 2.2e-04
Identity = 24/71 (33.80%), Postives = 36/71 (50.70%), Query Frame = 0


Query: 1  MKSWLICFALISMLVTGHEVAAETKFLTF--LDPCLQPLPPSSC----YKSKPVESANPY 60
          MK+W+I   +I  +V    V +   ++ +  ++ C  P PP  C     + K     N Y
Sbjct: 1  MKAWVIGLLVICAVVIAEPVESR-NYIEYGAINKCAGPNPPPGCNPPGTEQKNPTPVNEY 60

Query: 61 NRGCSAIHRCR 66
          +RGCS IHRCR
Sbjct: 61 SRGCSKIHRCR 70

The following BLAST results are available for this feature:

BLAST of PI0023972 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O64466	9.8e-05	36.62	Protein RALF-like 11 OS=Arabidopsis thaliana OX=3702 GN=RALFL11 PE=3 SV=1	[more]
F4ISE2	1.7e-04	35.21	Protein RALF-like 13 OS=Arabidopsis thaliana OX=3702 GN=RALFL13 PE=3 SV=1	[more]

BLAST of PI0023972 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DY33	6.0e-21	76.12	protein RALF-like 30 OS=Cucumis melo OX=3656 GN=LOC107991083 PE=3 SV=1	[more]
A0A0A0LZK3	7.3e-19	71.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G610770 PE=3 SV=1	[more]
A0A0A0LI94	7.3e-19	71.64	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=3 SV=1	[more]
A0A6J1G7J2	7.1e-14	62.69	protein RALF-like 10 OS=Cucurbita moschata OX=3662 GN=LOC111451581 PE=3 SV=1	[more]
A0A0A0M0X3	1.3e-12	61.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=3 SV=1	[more]

BLAST of PI0023972 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016900883.1	1.2e-20	76.12	PREDICTED: protein RALF-like 30 [Cucumis melo]	[more]
KGN66449.1	1.5e-18	71.64	hypothetical protein Csa_006867 [Cucumis sativus]	[more]
XP_038877580.1	9.8e-18	70.15	protein RALF-like 11 [Benincasa hispida]	[more]
XP_023533089.1	2.9e-14	65.67	protein RALF-like 10 [Cucurbita pepo subsp. pepo]	[more]
KAE8651825.1	8.5e-14	70.18	hypothetical protein Csa_006496, partial [Cucumis sativus]	[more]

BLAST of PI0023972 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19030.1	7.0e-06	36.62	ralf-like 11	[more]
AT2G19045.1	1.2e-05	35.21	RALF-like 13	[more]
AT2G19020.1	7.7e-05	36.62	ralf-like 10	[more]
AT2G19040.1	2.2e-04	33.80	RALF-like 12	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 32..66 e-value: 1.6E-11 score: 45.0
None	No IPR available	PANTHER	PTHR34270:SF5	PROTEIN RALF-LIKE 10-RELATED	coord: 1..67
None	No IPR available	PANTHER	PTHR34270	PROTEIN RALF-LIKE 15-RELATED	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023972.1	PI0023972.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005576	extracellular region