PI0023970 (gene) Melon (PI 482460) v1

Overview


Name	PI0023970
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	light-regulated protein-like
Location	chr06: 19136048 .. 19141695 (+)
RNA-Seq Expression	PI0023970
Synteny	PI0023970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TGTTTTGATGCCAGAGCCAAGCAGGTGCGGAATTTTCTGTTGAATATGTGAGCTTACTACTTTCTTTTCATGCTCTTGCATAGTATACGACAAACATTAATTATTATTGATTCTCATTGCAATAGATATACCCTGTTGATTTCAATGAATTTGAAATTGTTGATAGCAAAATAGGTGTAACATACAAGAGTTAAACGTGCATTCATTATTCTTATGCTTGCGCAAATTGTAATGCTTTGTCTGGAAGTCCCACGTGGACAACTTCTCTTCAATTTGAAGTTATTGAAAGTAAAACATTATGAACTTATGCAGTAGAAGTTGGTTAGTTTTCTAGTTCTTGAATAAAGCTCCATTGGCGGAAGCAACCCCTCCTTAAAGTTGTTAATATATCATGATGGTGTAATATACATATATAAAAAACACAATGCTTAACTCTATAATCCATGCTTAAAGACATTACCAAAACCACATGTAGCTCACACAACCTACCTAAAATTAAAATGAAGGTGAGTTCAAGAAAAAGGTTGATGGAAATAATTTTAACATTTTGTTTATTTTTTTATCTTTGCTTTAATCCTCAAAATAGATTTCAAGTTGCAATTTCTTTTGACAAATTTAAACTCATTAAATTTCTAGGACAGAAAAAAATGTAGAAAAGATAATAGATAGTCGAAAAAATAGAATATAAAACTATTACAAGTATGTAGGTTGTCACAGGTTGATCATTGTATGTATGTAAGGGATGAAAAATAACTATAGAATATACATTTCTATGATGAGACTAACTCAAACATAGCATAGTAAATAAGACATTGACTACTATTCACAAGTTTGATTGTCAACCTTTCACCCTTATAATTGTTAGAGATAAATTTAATTACAAAAGAAAAAACACATTCCTAGGACAAGGTTGATTGATTAGATAAGGCAAATATGTGACTGTTTTTGTTTGAAATCTAGGTTAGAAGTTGGAGTCATAATGAGCATAGATTAACCAGGCTTGTACTACTAACCTTCTAAATGTTTAAGAAAAAATAAAAAATTGAAGAATGGAAGGAACCATGGATTGTGAGCCTACCCGAAAATATTTGGCCTAAATTATTCTGTCAACCTTCATTCGAATAGCTCAATTGGGTTGGTTCATCAAACCTTAGGTCTTGGTTATATTTTGTACGAAATAGGTCCTTGTATTTTAGCCTCGGAAAGAGTGAATCAGTAATTATTCTTAGGGCTACTTGTAAAAAGACTGAGCTAAAATGTTTGTTCACTGTTTGGCTAATGCACGAAAAGAAAGAAAAAAAAATCTCGACTGTATTACTAATTAATCAAAGTAAATCGAATTTTTATAGTATATATAAATGAGAACTATCTCCATAAAATAATTTCACATTGTTAAGGGTTATACAAGGCAAGACTCAATTCCAAGAGTCATGAGGTTATCTACCAAAAAAGAAAGTCAAACTCTTATTTCTTATTCGACAAGTTGAGCTCACCCTATTTCACCAAAAGGAAAATAATTGAGGCGAGTTTGACGAGTTTGTTATTGACACTCTGCAACCTTGAGGCCTACCGCTACTCTCACACAATCAATATAGATATTTCCAAGCAAGAGATAGTGAACGGGCCATATAATTAAATAGCAACATAAGCAATTCATTTTAGCTGAAACCGAGCACTTTGTGTACTAATTTGGACATCAAAAGTGCAGTTGATCGACTTGATACTACACCTGATACTACACCGGTGTAAATGTTCTAACAATGTGTCTAGACCAGAGGAACAAGAAGGCCTGAACAAGATACCCATGCAAATACCCAACGTGTCTACCCTTAATACGGGTATGAGAATTTGGGAGTAGAACTGGCCTTCGATCTAATCCAAATTAACCCATTTCATTATATGTTATTTTCAGTGGGGACTGACAATTTGGCAGTGTACGTAACTTTATTGAGTTAGACATTATATAATGGGCCTTGGGCAAAAATATCTTGGAGAGATTCAAAATATCTCCAAGATGATGGGAAAGTTTGAAAGCTTCATGTAAATGAATAAACATCATAGGAAGAAGAAGCAAAGCAATCTTATCTAGAGAGACACCCTTCAGTACTGTATTCTATATAAAGAGGTAATAGTAACTTACTTATACTCATTCAAATCTCAAAACCTTATTTACAACATATCATCAAAATCAAAATGCAGGCTGTTCTTAGCATTGCTGTTCCTTCCCTTCTCCCCAGCTCAACACTTTCCAATAATAACCCTTCTCATTTCCCTTTGATCACATTTGGTTCTAACTCATCACGTCGCTTGGCCATCAAAGCAACCGCCTCGGTCGTCTATGACGCATCTGTGGTCGATTATAGTTCTGCTATCTCGTAAGTTATTTTCTCTTGCAACCTTCTCTTTTGTATTGAAATTAAATTTGAAGCACTACACTGAAATATCGTAACTCCTCAATTAAGTTATATCTTTTGATATTGGATCTTGAACTTTGAATTATGCTTTGTAGGTTCTTGGTTTTAAGAAACTTCTAATATATTTTACATTTAATACATAAGTGAAAGTACTTGGACTTGTTTGACATCTTTTAATTGCAATAAACTATTAAATACAAAATTAAAATTCATTAACTTAATTATTAGACACAAATATGAAAGCTTATGGTTTTTTTATTGCGGCGTAAAATGTGAGTAAGATTGTATTCTTGTAATATACAAGGTTTTAAACGTTGTTGTCAATGAAAATATGAAGGTTTCAATTACGTGAAAACCTCAAAAGATAATATTAAAAAATATAAATTGTGAGTAAACATTTTATCGTTTTAAAATAAGTTTAAATATTTGAGGAAAACATCTATTTTTACCCTAAACTTACACAAGTGTTGCCATTTTAACCCTTAATTCAATTTTAACTAATTCACCGAAATTGCAAATTATTTTCACACTCATAATTGCAACTGAATAATTTATAAAAATGTGCAAATTAACTCAAAATTCATAATTTTTTTAAAAAAATATTTAAGAAAAAAAAAAAAAAATCTCCCACGTTGTCTTTGTCTAAGGAAATTATCAATTTCATATATGTAGTATATAGTTTATATGTATAAAATAACTTTTTTCTATTAATATTTAATTTGAAGTGAGAATTTATTACTTAAAATCATTAAAATTGAAAGTCTATAATCTAAATAGATACCATCCGAAAAACTTAGAGTTAAAATTGATCATTTTCCCAATGTTATATTATTAATGTTAGGTTCAAATTTTTTTTTTATACTTTCGTTGTATAATTCCATCATTTTTATGTTAATAGTGTAAATATAGACAGTCTCTTATGAAGATACCAAACTTATGGACACATAAAAGTGGGATGAAAATTTAATAAATTTAAGTTGGTTGTATTCATAGTTTTAAATTTGGATGGAGATGTTGATATTTTTCATATTTTAACAAATAATATGTATTAAGGTGGATATTTTAGGGATATTTTGATGAAGTTTGTACATTGTATATAGGGTGTTTCCTGCAGAAGCATGTGAGACAATAGGTGGAGAGGCATGTTGTTGGGAAAATATGTTTCCAGAAGTAAGGCTTCAACCTTCACTTAACAATCAAAACCCCGCCGTTGCTTTGGAGGAGATTGATAGAGAATATCTTGATTATGCCGATTCAAAGACGTACGTCACATTTTTCTTTTTCTTTTTTTCATTTTTCCTATCATTTTTAAGAATGATTTAAAATGTTACTTATATTTACATCATATTTTAAATAATCATAACTTATTTTTAAAAAAAAAAAATCTGCCACACAAAATTTGTGTGGATGAGTAAGGATGCACAAAGATGAGTGTTGTTTACCATAATAACATCTTCTTTCGTTCGGTCTATTTTTCAAATCTTCAATAATATATTTTCATTAAATCTTAAACTTATTTATTAACAAATGATTTTTATTAAACCTCGCTAAATGATGATAATAATAAAGTAAATATATTTTTAAAATTGGAATTGTAAAGTACTAAAACGGTACTTCTTTTTAAAAAAAAAAAAAAAATCTCTATAATCCATAAACTAAAAATATAGTTTTTTTTTTCAATATTATAAAGAAACTCAACAAATAGAGATTTATTTTAGTTCCATCTTTCAACTTAATTAAGATTATTATAGATATAAAGTGATGTGACCTTTTTACTAGTCAAATCATGCTTTCCACAATTCAATATACAAAATCTAACTGACTTGACAACAATATGTTCATCATATATTTCAAAATAATTTTAAGTTGTTTAATATTATAATTTTAGTTCTTTTATACACACAAATTCCACAATTCTACTTGCATTTAAAAATTTTGAAAAGAAAAAAAAAATTACAATTTTAATTGCGTAGCTTTTTAAATATATGAAAATCAGTTGAACCATTTACAAATTATAGCAAAAATTTCTAAAGATAGATGCCAATAAAAATCTATTAGTGTTTGTCACAAATAGAAACTAATAAAAATCTATCACCAATAGAAACTTAATTATACAAGTCTATCTTCGATAGAGATTAATAGAAGTTAGTGTTTTCTATTTTTCTATTTTCGTAAATAGTCCGAGATTTTTCTTTTTTTTTTTTTATTTCGTAATATTTTAATGATTAAAAATTATAATTTGAATAGAACATAGGATATGAATTTTAGTGACTCATTATATCTGATCTACATGTGCTACTTTTCTTTTATATAAATTAAATTTGATTACAGTTTTTGTTTTATTGACAACAATGTTCGTTTTTTTTATTTAATTGAGAAATGTTTTTTTAAAAAATATATATTTGCTATTTTTTTATTCTTTAAATTTTAAATATAGAAATTTAGAAATGGAGGGATTAGTTTTTTAAATTAAATAACAAAAAATTTATGTTGTGGTAATTTTTATTATAAAAATTCATAGGTCTAAAGTGATTAAATAATTCTTCATAAACAAAAGAAAGAAAAAAAAAGAATAGTTAGTTCCTTTAATAACAATTTGATTATTTGTTTTTAGTAACTTAACTAGAAAATTAGGTTTATAAACACCTATCCCATCATCTAAACCCTTACTTTTCTTATTCAATTTCTATGAAGGAAAAAAAGAGAGTAAATTTTGAAGTTTGTAATGAGAGTAAATATGGAATTGAAGAAGTTGAAATGTAAGGATAGTCCATATTTAGAGATGTGAAAGAGCGTAAGATTGGGTTGGAGTTTGGAGTAATTAGTAATTGGGAGTGGATAGTAGTGAAAGTGTCATTATTATATTGTTATATTATTAATATTAATATTATTATATATGCAGCGTTTTCCCAGGGGAGGCTTGCGATGAACTTGGTGGAGAATTCTGTGAACCTGAGTTCCTAAATGGCGTTTTCTAGTCTTTTTATTTTATTACAAAAAAGAAAAGAAAAGAAAAGAAAAGGTTCTTAGTTTAATTAGCCCCCATATCGTTCTCTTCTGTAACTGTAACTGTAACTGTAACATCCTTTTCACCATTCTCAATAAATAATAACGCTTAAATATTTTAGCTTTTCATATATTTAAAAACAGATTTCATTTCATAATACCAGTTAGACAGATTCTAATATTTGTACATCACTTCATAAACATTTTATACAAACTCATACATTCAAC

mRNA sequence

TGTTTTGATGCCAGAGCCAAGCAGTTGATCGACTTGATACTACACCTGATACTACACCGGTGTAAATGTTCTAACAATGTGTCTAGACCAGAGGAACAAGAAGGCCTGAACAAGATACCCATGCAAATACCCAACGTGTCTACCCTTAATACGGGTATGAGAATTTGGGAGTAGAACTGGCCTTCGATCTAATCCAAATTAACCCATTTCATTATATGTTATTTTCAGTGGGGACTGACAATTTGGCAGTGTACGTAACTTTATTGAGTTAGACATTATATAATGGGCCTTGGGCAAAAATATCTTGGAGAGATTCAAAATATCTCCAAGATGATGGGAAAGTTTGAAAGCTTCATGTAAATGAATAAACATCATAGGAAGAAGAAGCAAAGCAATCTTATCTAGAGAGACACCCTTCAGTACTGTATTCTATATAAAGAGGTAATAGTAACTTACTTATACTCATTCAAATCTCAAAACCTTATTTACAACATATCATCAAAATCAAAATGCAGGCTGTTCTTAGCATTGCTGTTCCTTCCCTTCTCCCCAGCTCAACACTTTCCAATAATAACCCTTCTCATTTCCCTTTGATCACATTTGGTTCTAACTCATCACGTCGCTTGGCCATCAAAGCAACCGCCTCGGTCGTCTATGACGCATCTGTGGTCGATTATAGTTCTGCTATCTCGGTGTTTCCTGCAGAAGCATGTGAGACAATAGGTGGAGAGGCATGTTGTTGGGAAAATATGTTTCCAGAAGTAAGGCTTCAACCTTCACTTAACAATCAAAACCCCGCCGTTGCTTTGGAGGAGATTGATAGAGAATATCTTGATTATGCCGATTCAAAGACCGTTTTCCCAGGGGAGGCTTGCGATGAACTTGGTGGAGAATTCTGTGAACCTGAGTTCCTAAATGGCGTTTTCTAGTCTTTTTATTTTATTACAAAAAAGAAAAGAAAAGAAAAGAAAAGGTTCTTAGTTTAATTAGCCCCCATATCGTTCTCTTCTGTAACTGTAACTGTAACTGTAACATCCTTTTCACCATTCTCAATAAATAATAACGCTTAAATATTTTAGCTTTTCATATATTTAAAAACAGATTTCATTTCATAATACCAGTTAGACAGATTCTAATATTTGTACATCACTTCATAAACATTTTATACAAACTCATACATTCAAC

Coding sequence (CDS)

ATGCAGGCTGTTCTTAGCATTGCTGTTCCTTCCCTTCTCCCCAGCTCAACACTTTCCAATAATAACCCTTCTCATTTCCCTTTGATCACATTTGGTTCTAACTCATCACGTCGCTTGGCCATCAAAGCAACCGCCTCGGTCGTCTATGACGCATCTGTGGTCGATTATAGTTCTGCTATCTCGGTGTTTCCTGCAGAAGCATGTGAGACAATAGGTGGAGAGGCATGTTGTTGGGAAAATATGTTTCCAGAAGTAAGGCTTCAACCTTCACTTAACAATCAAAACCCCGCCGTTGCTTTGGAGGAGATTGATAGAGAATATCTTGATTATGCCGATTCAAAGACCGTTTTCCCAGGGGAGGCTTGCGATGAACTTGGTGGAGAATTCTGTGAACCTGAGTTCCTAAATGGCGTTTTCTAG

Protein sequence

MQAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRLQPSLNNQNPAVALEEIDREYLDYADSKTVFPGEACDELGGEFCEPEFLNGVF

Homology

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BLAST of PI0023970 vs. ExPASy Swiss-Prot
Match: Q03200 (Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=LIR1 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 9.1e-21
Identity = 53/98 (54.08%), Postives = 68/98 (69.39%), Query Frame = 0


Query: 37  RRLAIK---ATASVVYDASVVDYSSAISVFPAEACETIGGEACCWENMFPEVRLQPSLNN 96
           RR+A++   A A+V  +A+ VDYSS ISVFP EAC+ IGGEAC  + M+PE +L  S   
Sbjct: 30  RRVALRVRAAAAAVAVEAAEVDYSSNISVFPMEACDLIGGEACNVQ-MYPEAKLSSSAAV 89

Query: 97  QNPAVALEEIDREYLDYADSKTVFPGEACDELGGEFCE 132
                A EE+DR+YL Y +  TVFP EACD+LGGEFC+
Sbjct: 90  AVSRAAAEEVDRDYLSYDEPTTVFPEEACDDLGGEFCK 126

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BLAST of PI0023970 vs. ExPASy Swiss-Prot
Match: Q96500 (Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1 PE=1 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-18
Identity = 61/140 (43.57%), Postives = 87/140 (62.14%), Query Frame = 0


Query: 1   MQAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIK-----ATASVVYDASVVD 60
           MQ  L I    LLP  + S ++P    L+   + +SR  +++     +++S+  D + VD
Sbjct: 1   MQGALFIKPTILLPLPS-SVSSPKLTFLLPHATKASRLSSLRSNNSSSSSSLTSDPNTVD 60

Query: 61  YSSAI-SVFPAEACETIGGEACCWENMFPEVRLQPSLNNQNPAVALEEIDREYLDYADSK 120
           Y+S+I SVFPAEACE I G AC   +++PEV+L     ++   VA E +DREY +Y   K
Sbjct: 61  YNSSILSVFPAEACEVISGYACS-ADIYPEVKLDTKPVSR--PVASEPVDREYEEYNSPK 120

Query: 121 TVFPGEACDELGGEFCEPEF 135
           TVF  EACD+LGGEFCEP+F
Sbjct: 121 TVFREEACDDLGGEFCEPDF 136

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BLAST of PI0023970 vs. ExPASy TrEMBL
Match: A0A0A0L8G9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G598910 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 2.9e-62
Identity = 125/140 (89.29%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 1   MQAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAI 60
           MQAVLSIAVPSLLPSSTLS+N PSHFPLITF S+SSRR +IKATASVVYD SVVDYSSAI
Sbjct: 18  MQAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAI 77

Query: 61  SVFPAEACETIGGEACCWENMFPEVRL-QPSLNNQNPAVALEEIDREYLDYADSKTVFPG 120
           SVFPAEACETIGGEAC WENMFPEVRL Q SLNNQNP  + EEIDREYLDYADSKTVFPG
Sbjct: 78  SVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASSEEIDREYLDYADSKTVFPG 137

Query: 121 EACDELGGEFCEPEFLNGVF 140
           EACD+LGGEFCEPEFLNGVF
Sbjct: 138 EACDDLGGEFCEPEFLNGVF 157

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BLAST of PI0023970 vs. ExPASy TrEMBL
Match: C9E9F1 (GA-like protein (Fragment) OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 1.2e-60
Identity = 122/137 (89.05%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 4   VLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVF 63
           VLSIAVPSLLPSSTLS+N PSHFPLITF S+SSRR +IKATASVVYD SVVDYSSAISVF
Sbjct: 1   VLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVF 60

Query: 64  PAEACETIGGEACCWENMFPEVRL-QPSLNNQNPAVALEEIDREYLDYADSKTVFPGEAC 123
           PAEACETIGGEAC WENMFPEVRL Q SLNNQNP  + EEIDREYLDYADSKTVFPGEAC
Sbjct: 61  PAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASSEEIDREYLDYADSKTVFPGEAC 120

Query: 124 DELGGEFCEPEFLNGVF 140
           D+LGGEFCEPEFLNGVF
Sbjct: 121 DDLGGEFCEPEFLNGVF 137

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BLAST of PI0023970 vs. ExPASy TrEMBL
Match: A0A5A7VMP8 (Light-regulated protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold595G00270 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 3.6e-60
Identity = 127/140 (90.71%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 3   AVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISV 62
           AVLSIAVPSLLPSSTLSN++ SHFP ITFGSNSSRR AIKATASVVYD SVVDYSSAISV
Sbjct: 4   AVLSIAVPSLLPSSTLSNSSHSHFPFITFGSNSSRRSAIKATASVVYDTSVVDYSSAISV 63

Query: 63  FPAEACETIGGEACCWENMFPEVRLQPSL-NNQNPAVA-LEEIDREYLDY-ADSKTVFPG 122
           FPAEACETIGGEACCW NMFPEVRLQPSL NNQNPAVA LEEIDREYLDY ADSKTVF G
Sbjct: 64  FPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTVFRG 123

Query: 123 EACDELGGEFCEPEFLNGVF 140
           EACD+LGGEFCE EFLNGVF
Sbjct: 124 EACDDLGGEFCEAEFLNGVF 143

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BLAST of PI0023970 vs. ExPASy TrEMBL
Match: A0A1S4DXW1 (light-regulated protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.3e-59
Identity = 126/140 (90.00%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 3   AVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISV 62
           AVLSIAVPSLLPSSTLSN++ SHFP ITFGSNSSR  AIKATASVVYD SVVDYSSAISV
Sbjct: 17  AVLSIAVPSLLPSSTLSNSSHSHFPFITFGSNSSRPSAIKATASVVYDTSVVDYSSAISV 76

Query: 63  FPAEACETIGGEACCWENMFPEVRLQPSL-NNQNPAVA-LEEIDREYLDY-ADSKTVFPG 122
           FPAEACETIGGEACCW NMFPEVRLQPSL NNQNPAVA LEEIDREYLDY ADSKTVF G
Sbjct: 77  FPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTVFRG 136

Query: 123 EACDELGGEFCEPEFLNGVF 140
           EACD+LGGEFCE EFLNGVF
Sbjct: 137 EACDDLGGEFCEAEFLNGVF 156

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BLAST of PI0023970 vs. ExPASy TrEMBL
Match: A0A1S3BND3 (light-regulated protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.3e-59
Identity = 126/140 (90.00%), Postives = 129/140 (92.14%), Query Frame = 0


Query: 3   AVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISV 62
           AVLSIAVPSLLPSSTLSN++ SHFP ITFGSNSSR  AIKATASVVYD SVVDYSSAISV
Sbjct: 23  AVLSIAVPSLLPSSTLSNSSHSHFPFITFGSNSSRPSAIKATASVVYDTSVVDYSSAISV 82

Query: 63  FPAEACETIGGEACCWENMFPEVRLQPSL-NNQNPAVA-LEEIDREYLDY-ADSKTVFPG 122
           FPAEACETIGGEACCW NMFPEVRLQPSL NNQNPAVA LEEIDREYLDY ADSKTVF G
Sbjct: 83  FPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTVFRG 142

Query: 123 EACDELGGEFCEPEFLNGVF 140
           EACD+LGGEFCE EFLNGVF
Sbjct: 143 EACDDLGGEFCEAEFLNGVF 162

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BLAST of PI0023970 vs. NCBI nr
Match: XP_004145699.2 (light-regulated protein, chloroplastic [Cucumis sativus])

HSP 1 Score: 247.7 bits (631), Expect = 6.0e-62
Identity = 125/140 (89.29%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 1   MQAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAI 60
           MQAVLSIAVPSLLPSSTLS+N PSHFPLITF S+SSRR +IKATASVVYD SVVDYSSAI
Sbjct: 18  MQAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAI 77

Query: 61  SVFPAEACETIGGEACCWENMFPEVRL-QPSLNNQNPAVALEEIDREYLDYADSKTVFPG 120
           SVFPAEACETIGGEAC WENMFPEVRL Q SLNNQNP  + EEIDREYLDYADSKTVFPG
Sbjct: 78  SVFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASSEEIDREYLDYADSKTVFPG 137

Query: 121 EACDELGGEFCEPEFLNGVF 140
           EACD+LGGEFCEPEFLNGVF
Sbjct: 138 EACDDLGGEFCEPEFLNGVF 157

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BLAST of PI0023970 vs. NCBI nr
Match: KAE8650797.1 (hypothetical protein Csa_017474 [Cucumis sativus])

HSP 1 Score: 245.7 bits (626), Expect = 2.3e-61
Identity = 124/139 (89.21%), Postives = 129/139 (92.81%), Query Frame = 0


Query: 2   QAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAIS 61
           QAVLSIAVPSLLPSSTLS+N PSHFPLITF S+SSRR +IKATASVVYD SVVDYSSAIS
Sbjct: 279 QAVLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAIS 338

Query: 62  VFPAEACETIGGEACCWENMFPEVRL-QPSLNNQNPAVALEEIDREYLDYADSKTVFPGE 121
           VFPAEACETIGGEAC WENMFPEVRL Q SLNNQNP  + EEIDREYLDYADSKTVFPGE
Sbjct: 339 VFPAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASSEEIDREYLDYADSKTVFPGE 398

Query: 122 ACDELGGEFCEPEFLNGVF 140
           ACD+LGGEFCEPEFLNGVF
Sbjct: 399 ACDDLGGEFCEPEFLNGVF 417

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BLAST of PI0023970 vs. NCBI nr
Match: ACV88397.1 (GA-like protein, partial [Cucumis sativus])

HSP 1 Score: 242.3 bits (617), Expect = 2.5e-60
Identity = 122/137 (89.05%), Postives = 127/137 (92.70%), Query Frame = 0


Query: 4   VLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISVF 63
           VLSIAVPSLLPSSTLS+N PSHFPLITF S+SSRR +IKATASVVYD SVVDYSSAISVF
Sbjct: 1   VLSIAVPSLLPSSTLSSNKPSHFPLITFSSHSSRRSSIKATASVVYDTSVVDYSSAISVF 60

Query: 64  PAEACETIGGEACCWENMFPEVRL-QPSLNNQNPAVALEEIDREYLDYADSKTVFPGEAC 123
           PAEACETIGGEAC WENMFPEVRL Q SLNNQNP  + EEIDREYLDYADSKTVFPGEAC
Sbjct: 61  PAEACETIGGEACGWENMFPEVRLQQASLNNQNPVASSEEIDREYLDYADSKTVFPGEAC 120

Query: 124 DELGGEFCEPEFLNGVF 140
           D+LGGEFCEPEFLNGVF
Sbjct: 121 DDLGGEFCEPEFLNGVF 137

[Close]

BLAST of PI0023970 vs. NCBI nr
Match: XP_038893926.1 (light-regulated protein, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 241.9 bits (616), Expect = 3.3e-60
Identity = 123/139 (88.49%), Postives = 129/139 (92.81%), Query Frame = 0


Query: 1   MQAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAI 60
           MQAVLSIAVP LLP STLSNNNPS FPLI+F S+ SRR AIKATASVVYDAS+VDYSSAI
Sbjct: 1   MQAVLSIAVPPLLP-STLSNNNPSQFPLISFSSHCSRRSAIKATASVVYDASIVDYSSAI 60

Query: 61  SVFPAEACETIGGEACCWENMFPEVRLQPSLNNQNPAVALEEIDREYLDYADSKTVFPGE 120
           SVFPAEACETIGGEA CW NMFPEVR+QPSLNNQ PAVALEEIDREYLDYADS+TVFPGE
Sbjct: 61  SVFPAEACETIGGEA-CWANMFPEVRIQPSLNNQKPAVALEEIDREYLDYADSRTVFPGE 120

Query: 121 ACDELGGEFCEPEFLNGVF 140
           ACD+LGGEFCEPEFLN VF
Sbjct: 121 ACDDLGGEFCEPEFLNSVF 137

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BLAST of PI0023970 vs. NCBI nr
Match: KAA0066931.1 (light-regulated protein isoform X2 [Cucumis melo var. makuwa] >TYK30213.1 light-regulated protein isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 240.7 bits (613), Expect = 7.3e-60
Identity = 127/140 (90.71%), Postives = 130/140 (92.86%), Query Frame = 0


Query: 3   AVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIKATASVVYDASVVDYSSAISV 62
           AVLSIAVPSLLPSSTLSN++ SHFP ITFGSNSSRR AIKATASVVYD SVVDYSSAISV
Sbjct: 4   AVLSIAVPSLLPSSTLSNSSHSHFPFITFGSNSSRRSAIKATASVVYDTSVVDYSSAISV 63

Query: 63  FPAEACETIGGEACCWENMFPEVRLQPSL-NNQNPAVA-LEEIDREYLDY-ADSKTVFPG 122
           FPAEACETIGGEACCW NMFPEVRLQPSL NNQNPAVA LEEIDREYLDY ADSKTVF G
Sbjct: 64  FPAEACETIGGEACCWANMFPEVRLQPSLNNNQNPAVANLEEIDREYLDYAADSKTVFRG 123

Query: 123 EACDELGGEFCEPEFLNGVF 140
           EACD+LGGEFCE EFLNGVF
Sbjct: 124 EACDDLGGEFCEAEFLNGVF 143

[Close]

BLAST of PI0023970 vs. TAIR 10
Match: AT3G26740.1 (CCR-like )

HSP 1 Score: 94.0 bits (232), Expect = 1.0e-19
Identity = 61/140 (43.57%), Postives = 87/140 (62.14%), Query Frame = 0


Query: 1   MQAVLSIAVPSLLPSSTLSNNNPSHFPLITFGSNSSRRLAIK-----ATASVVYDASVVD 60
           MQ  L I    LLP  + S ++P    L+   + +SR  +++     +++S+  D + VD
Sbjct: 1   MQGALFIKPTILLPLPS-SVSSPKLTFLLPHATKASRLSSLRSNNSSSSSSLTSDPNTVD 60

Query: 61  YSSAI-SVFPAEACETIGGEACCWENMFPEVRLQPSLNNQNPAVALEEIDREYLDYADSK 120
           Y+S+I SVFPAEACE I G AC   +++PEV+L     ++   VA E +DREY +Y   K
Sbjct: 61  YNSSILSVFPAEACEVISGYACS-ADIYPEVKLDTKPVSR--PVASEPVDREYEEYNSPK 120

Query: 121 TVFPGEACDELGGEFCEPEF 135
           TVF  EACD+LGGEFCEP+F
Sbjct: 121 TVFREEACDDLGGEFCEPDF 136

The following BLAST results are available for this feature:

BLAST of PI0023970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q03200	9.1e-21	54.08	Light-regulated protein, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q96500	1.5e-18	43.57	Light-regulated protein 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LIR1...	[more]

BLAST of PI0023970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L8G9	2.9e-62	89.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G598910 PE=4 SV=1	[more]
C9E9F1	1.2e-60	89.05	GA-like protein (Fragment) OS=Cucumis sativus OX=3659 PE=2 SV=1	[more]
A0A5A7VMP8	3.6e-60	90.71	Light-regulated protein isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S4DXW1	2.3e-59	90.00	light-regulated protein isoform X3 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 ...	[more]
A0A1S3BND3	2.3e-59	90.00	light-regulated protein isoform X2 OS=Cucumis melo OX=3656 GN=LOC103491736 PE=4 ...	[more]

BLAST of PI0023970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145699.2	6.0e-62	89.29	light-regulated protein, chloroplastic [Cucumis sativus]	[more]
KAE8650797.1	2.3e-61	89.21	hypothetical protein Csa_017474 [Cucumis sativus]	[more]
ACV88397.1	2.5e-60	89.05	GA-like protein, partial [Cucumis sativus]	[more]
XP_038893926.1	3.3e-60	88.49	light-regulated protein, chloroplastic-like [Benincasa hispida]	[more]
KAA0066931.1	7.3e-60	90.71	light-regulated protein isoform X2 [Cucumis melo var. makuwa] >TYK30213.1 light-...	[more]

BLAST of PI0023970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G26740.1	1.0e-19	43.57	CCR-like	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009856	Light regulated Lir1	PFAM	PF07207	Lir1	coord: 1..131 e-value: 2.4E-45 score: 154.1
IPR009856	Light regulated Lir1	PANTHER	PTHR36762	LIGHT-REGULATED PROTEIN 1, CHLOROPLASTIC	coord: 1..139
None	No IPR available	PANTHER	PTHR36762:SF3	LIGHT-REGULATED PROTEIN	coord: 1..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023970.1	PI0023970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009507	chloroplast