PI0023852 (gene) Melon (PI 482460) v1

Overview


Name	PI0023852
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr06: 17305700 .. 17307731 (-)
RNA-Seq Expression	PI0023852
Synteny	PI0023852

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGAACAAGAACAAGGTTCCATCCTCACAAAGAAAAGTTGGGAACAACTGATGGAATCTCTTAAAGGCGGGATCATCATCAGAGAGAATCCTTTGTTCGACAACTTTACTCCTACTTCTGATCTATTAGAGAAAGAATCACACCTTGAAGTAGTGTCTATCATGATAATAGATGTAACAGCTGAGGCAACCATGACAAGGATGGAGAGGAAAATAAATTTCCTAATGAAAGTTGTCGAGGAGCGAAATCATGAAATCGCTGCCTTGAAAGATTATATGAAGGCTCATGAAATTGTTGAGTCGAGCCAAACTCCTGCTGTTAAAGCTGATGATAAAGGAAAAGTTATGTTGCAGGAAAACCAGATGCAACAGACCATCTCCGTCGCCACCCTATCAGTCCAACAGCTGCTGAATATGATCACAAGCTCCATAAGAGCTCAGTATGGAGGACAACCACAAACTTCTTATATTAATCCAAGCCATATACCAAGAGAATCAACGACCTGAGAATGTCTGTTGGGTACCAGCCTCCAAAGTTTCAACAGTTCAATGGAAGGGGCAATCCAAAAAACACATTGCTCATTTTGTTGAAACATGCAAAAATGCAAGATCAAAAGGAGGCCAACTAGTCAAGTAGTTCATTTGAAGCTTGAAAGGAAATTCTTTCGAGTGGTATATTGATTTGGAGCCAGAAGTGATTAACAACTAAGAATAGCTGGAAAGAGAGTTCCTCAACCGCTTCTACAGCACTAGGTGCATCGTCAGCATGATGGAGTTGACAAACACTAAACAACCGAAGGGAGAGCCAATGGTTGACTATATAAACCGATGGAGAGCTTTGAGCCTGGATTGCAAAGACAAACTCACTAAACTATCCGCAGTGGAGATGTGCATCCAAGGCATGAACTGGAAGCTTCTCTACATCCTGTAGGGAATAAAATCCTGCATGTTTAAAGAGTTGGCAACTCGCACCCATGATATGGAACTGAGCACTGGCAACAGAGGAGCAAAGGATTTATTGGTTTCGAAAATGAGGAGTGACAAGAATGAAGCCAAGGACACTGAAAAGATCGTGAATAGTATCATAAAAGTATCTATGGTCGTTTATGCGACTCCATTGAAATCTTTCTCTAAAAGAAAAGAAACAAAAGCTAAAAGAAAGCATGGTGGGGACGAGAAGCATCGTACAACTCTCAAAGAAAGGCATAAAAAAGTTTATCCATTTCCTGACTCTAATGTTGCAGACATGTTAGTGCAGCTATTAGAGAAGCAACTTATTCAGCTGCTGGAAAGCAAACGACCTGAACAAGCAGGAAAGGTAGATGATCCTAACTACTACAAGTATCATCGGGTCATTAGTCACCCTGTTGAAAAGTGTTTTGTGTTAAGGAGTTGATTTTAAATTTAGCACGTGAAAAGAAGATCGAGTTGGATATTGATGAAGTAGATCAGACAAATCATGTTGCAGTCGAGATCACTTCAAGTGTTTCGTCATCAACGGAACTTTATGGTCAAAGGAAAAGCTTGATTCAGTTTGTGATTCAGTTTGGAACTTTCGAATCTATAGTTGTTCCATTCCAACAAAAGATCTTGACGATAGCTCCAAAAACAAAGAGACGGTACACTCCCACCAGAATTACAGAGGGGAAAGCAAGACTCACAAAAATAAAGGAAGAAAGAAGATGTGGAAGCCTAAGCACGTGCAGGAGAAAGACGATGACTTCCACCGACCTCAATGACCGGTAACTTTAGTAGAATTCCTCCAAGAAACTTCCTTGATGATCATCCACAGGAAGTATTAGAAGTCATTGCATGTCATGCTGTCAGCATAGTAGAAGCCGACAACAATCATGCATCTTTTGAAGAAGTCGACAATTCAAAGGAAATCATGTATCTACCGGTAACTTTGGTAGAATTCCTCCCAAGAAACATCACGTACTCCACTTCCTCAAATCAAGTGTACACATTCAACCGAAAGAGAATCAGAGGATCAAGTACAAGAGATCGAACCACATCACATCATAATTAA

mRNA sequence

ATGGAAGAACAAGAACAAGGTTCCATCCTCACAAAGAAAAGTTGGGAACAACTGATGGAATCTCTTAAAGGCGGGATCATCATCAGAGAGAATCCTTTGTTCGACAACTTTACTCCTACTTCTGATCTATTAGAGAAAGAATCACACCTTGAAGTAGTGTCTATCATGATAATAGATGTAACAGCTGAGGCAACCATGACAAGGATGGAGAGGAAAATAAATTTCCTAATGAAAGTTGTCGAGGAGCGAAATCATGAAATCGCTGCCTTGAAAGATTATATGAAGGCTCATGAAATTGTTGAGTCGAGCCAAACTCCTGCTGTTAAAGCTGATGATAAAGGAAAATTTGGAACTTTCGAATCTATAGTTGTTCCATTCCAACAAAAGATCTTGACGATAGCTCCAAAAACAAAGAGACGGTACACTCCCACCAGAATTACAGAGGGGAAAGCAAGACTCACAAAAATAAAGGAAGAAAGAAGATGTGGAAGCCTAAGCACGTGCAGGAGAAAGACGATGACTTCCACCGACCTCAATGACCGCATAGTAGAAGCCGACAACAATCATGCATCTTTTGAAGAAGTCGACAATTCAAAGGAAATCATGTATCTACCGGTAACTTTGGTAGAATTCCTCCCAAGAAACATCACGTACTCCACTTCCTCAAATCAAGTGTACACATTCAACCGAAAGAGAATCAGAGGATCAAGTACAAGAGATCGAACCACATCACATCATAATTAA

Coding sequence (CDS)

ATGGAAGAACAAGAACAAGGTTCCATCCTCACAAAGAAAAGTTGGGAACAACTGATGGAATCTCTTAAAGGCGGGATCATCATCAGAGAGAATCCTTTGTTCGACAACTTTACTCCTACTTCTGATCTATTAGAGAAAGAATCACACCTTGAAGTAGTGTCTATCATGATAATAGATGTAACAGCTGAGGCAACCATGACAAGGATGGAGAGGAAAATAAATTTCCTAATGAAAGTTGTCGAGGAGCGAAATCATGAAATCGCTGCCTTGAAAGATTATATGAAGGCTCATGAAATTGTTGAGTCGAGCCAAACTCCTGCTGTTAAAGCTGATGATAAAGGAAAATTTGGAACTTTCGAATCTATAGTTGTTCCATTCCAACAAAAGATCTTGACGATAGCTCCAAAAACAAAGAGACGGTACACTCCCACCAGAATTACAGAGGGGAAAGCAAGACTCACAAAAATAAAGGAAGAAAGAAGATGTGGAAGCCTAAGCACGTGCAGGAGAAAGACGATGACTTCCACCGACCTCAATGACCGCATAGTAGAAGCCGACAACAATCATGCATCTTTTGAAGAAGTCGACAATTCAAAGGAAATCATGTATCTACCGGTAACTTTGGTAGAATTCCTCCCAAGAAACATCACGTACTCCACTTCCTCAAATCAAGTGTACACATTCAACCGAAAGAGAATCAGAGGATCAAGTACAAGAGATCGAACCACATCACATCATAATTAA

Protein sequence

MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDVTAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIVESSQTPAVKADDKGKFGTFESIVVPFQQKILTIAPKTKRRYTPTRITEGKARLTKIKEERRCGSLSTCRRKTMTSTDLNDRIVEADNNHASFEEVDNSKEIMYLPVTLVEFLPRNITYSTSSNQVYTFNRKRIRGSSTRDRTTSHHN

Homology

[Close]

BLAST of PI0023852 vs. ExPASy TrEMBL
Match: A0A5D3CLH2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G001220 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 1.2e-39
Identity = 96/141 (68.09%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 1   MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDV 60
           M+EQEQG +L KKS EQL+ESLKGGIIIR+NPLF+N TP S+L +KESHLEVVS+M++DV
Sbjct: 30  MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPASNLSDKESHLEVVSVMMVDV 89

Query: 61  TAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIVESSQTPAVKADDKGK--FGT 120
           TAEATM  MERKINFLMKVVEER+HEI ALKD MK +EI ESSQTP VKA DKGK  +G 
Sbjct: 90  TAEATMAEMERKINFLMKVVEERDHEITALKDQMKTYEITESSQTPIVKATDKGKNVYGG 149

Query: 121 FESIVVPFQQKILTIAPKTKR 140
                 P Q   +   P TKR
Sbjct: 150 ------PPQTSFMYFKPYTKR 164

[Close]

BLAST of PI0023852 vs. ExPASy TrEMBL
Match: A0A5D3CJ11 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00130 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.7e-39
Identity = 94/139 (67.63%), Postives = 110/139 (79.14%), Query Frame = 0


Query: 1   MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDV 60
           M+EQE+  +LTKKSWEQLMES K  I IRENPLFDN TPT DLLEKES+LE++SIM+ DV
Sbjct: 1   MQEQEKSFVLTKKSWEQLMESPKDRIFIRENPLFDNSTPTFDLLEKESYLELLSIMMADV 60

Query: 61  TAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIVESSQTPAVKADDKGKFGTFE 120
           TAEA M   ERKINFLMKV+E+R+HEIA LKD+MKA E +ESS+TPAVKADDKGK    E
Sbjct: 61  TAEAAMIEKERKINFLMKVIEDRDHEIATLKDHMKARETIESSKTPAVKADDKGKVMLQE 120

Query: 121 SIVVPFQQKI---LTIAPK 137
           S     QQ I   LT++P+
Sbjct: 121 S---QMQQSIAVNLTVSPR 136

[Close]

BLAST of PI0023852 vs. ExPASy TrEMBL
Match: A0A5A7TCF9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00470 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.7e-39
Identity = 94/139 (67.63%), Postives = 110/139 (79.14%), Query Frame = 0


Query: 1   MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDV 60
           M+EQE+  +LTKKSWEQLMES K  I IRENPLFDN TPT DLLEKES+LE++SIM+ DV
Sbjct: 1   MQEQEKSFVLTKKSWEQLMESPKDRIFIRENPLFDNSTPTFDLLEKESYLELLSIMMADV 60

Query: 61  TAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIVESSQTPAVKADDKGKFGTFE 120
           TAEA M   ERKINFLMKV+E+R+HEIA LKD+MKA E +ESS+TPAVKADDKGK    E
Sbjct: 61  TAEAAMIEKERKINFLMKVIEDRDHEIATLKDHMKARETIESSKTPAVKADDKGKVMLQE 120

Query: 121 SIVVPFQQKI---LTIAPK 137
           S     QQ I   LT++P+
Sbjct: 121 S---QMQQSIAVNLTVSPR 136

[Close]

BLAST of PI0023852 vs. ExPASy TrEMBL
Match: A0A5A7TSM3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold663G00250 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.0e-38
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDV 60
           M+EQEQG +L KKS EQL+ESLKGGIIIR+NPLF+N TPTS+L +KESHLEVVS+M+IDV
Sbjct: 1   MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDV 60

Query: 61  TAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIVESSQTPAVKADDKGK 116
           TAEATM  ME+KINFLMKVVEER+HEIAALKD MKA E  ESSQT  VK  DKGK
Sbjct: 61  TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGK 115

[Close]

BLAST of PI0023852 vs. ExPASy TrEMBL
Match: A0A5A7SSD3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00230 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 4.0e-38
Identity = 88/115 (76.52%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDV 60
           M+EQEQG +L KKS EQL+ES KGGIIIR+NPLF+N TP S+L +KESHLEVVS+M++DV
Sbjct: 30  MQEQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNSTPASNLSDKESHLEVVSVMMVDV 89

Query: 61  TAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIVESSQTPAVKADDKGK 116
            AEATM +MERKINFLMKVVEER+HEIAALKD MKA E  ESSQTP VKA DKGK
Sbjct: 90  AAEATMAKMERKINFLMKVVEERDHEIAALKDQMKACETAESSQTPVVKATDKGK 144

[Close]

BLAST of PI0023852 vs. NCBI nr
Match: TYK11266.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 173.3 bits (438), Expect = 2.6e-39
Identity = 96/141 (68.09%), Postives = 110/141 (78.01%), Query Frame = 0


Query: 1   MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDV 60
           M+EQEQG +L KKS EQL+ESLKGGIIIR+NPLF+N TP S+L +KESHLEVVS+M++DV
Sbjct: 30  MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPASNLSDKESHLEVVSVMMVDV 89

Query: 61  TAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIVESSQTPAVKADDKGK--FGT 120
           TAEATM  MERKINFLMKVVEER+HEI ALKD MK +EI ESSQTP VKA DKGK  +G 
Sbjct: 90  TAEATMAEMERKINFLMKVVEERDHEITALKDQMKTYEITESSQTPIVKATDKGKNVYGG 149

Query: 121 FESIVVPFQQKILTIAPKTKR 140
                 P Q   +   P TKR
Sbjct: 150 ------PPQTSFMYFKPYTKR 164

[Close]

BLAST of PI0023852 vs. NCBI nr
Match: TYK11178.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.4 bits (433), Expect = 9.7e-39
Identity = 94/139 (67.63%), Postives = 110/139 (79.14%), Query Frame = 0


Query: 1   MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDV 60
           M+EQE+  +LTKKSWEQLMES K  I IRENPLFDN TPT DLLEKES+LE++SIM+ DV
Sbjct: 1   MQEQEKSFVLTKKSWEQLMESPKDRIFIRENPLFDNSTPTFDLLEKESYLELLSIMMADV 60

Query: 61  TAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIVESSQTPAVKADDKGKFGTFE 120
           TAEA M   ERKINFLMKV+E+R+HEIA LKD+MKA E +ESS+TPAVKADDKGK    E
Sbjct: 61  TAEAAMIEKERKINFLMKVIEDRDHEIATLKDHMKARETIESSKTPAVKADDKGKVMLQE 120

Query: 121 SIVVPFQQKI---LTIAPK 137
           S     QQ I   LT++P+
Sbjct: 121 S---QMQQSIAVNLTVSPR 136

[Close]

BLAST of PI0023852 vs. NCBI nr
Match: KAA0038969.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 171.4 bits (433), Expect = 9.7e-39
Identity = 94/139 (67.63%), Postives = 110/139 (79.14%), Query Frame = 0


Query: 1   MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDV 60
           M+EQE+  +LTKKSWEQLMES K  I IRENPLFDN TPT DLLEKES+LE++SIM+ DV
Sbjct: 1   MQEQEKSFVLTKKSWEQLMESPKDRIFIRENPLFDNSTPTFDLLEKESYLELLSIMMADV 60

Query: 61  TAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIVESSQTPAVKADDKGKFGTFE 120
           TAEA M   ERKINFLMKV+E+R+HEIA LKD+MKA E +ESS+TPAVKADDKGK    E
Sbjct: 61  TAEAAMIEKERKINFLMKVIEDRDHEIATLKDHMKARETIESSKTPAVKADDKGKVMLQE 120

Query: 121 SIVVPFQQKI---LTIAPK 137
           S     QQ I   LT++P+
Sbjct: 121 S---QMQQSIAVNLTVSPR 136

[Close]

BLAST of PI0023852 vs. NCBI nr
Match: TYK04575.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 168.3 bits (425), Expect = 8.2e-38
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDV 60
           M+EQEQG +L KKS EQL+ES KGGIIIR+NPLF+N TP S+L +KESHLEVVS+M++DV
Sbjct: 30  MQEQEQGFVLKKKSLEQLIESPKGGIIIRDNPLFNNSTPASNLSDKESHLEVVSVMMVDV 89

Query: 61  TAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIVESSQTPAVKADDKGK 116
           TAEATM  MERKINFLMKVVEER+HEIAALKD MKA E  ESSQTP VKA DKGK
Sbjct: 90  TAEATMAEMERKINFLMKVVEERDHEIAALKDQMKACETGESSQTPVVKATDKGK 144

[Close]

BLAST of PI0023852 vs. NCBI nr
Match: KAA0046412.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14649.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 168.3 bits (425), Expect = 8.2e-38
Identity = 89/115 (77.39%), Postives = 100/115 (86.96%), Query Frame = 0


Query: 1   MEEQEQGSILTKKSWEQLMESLKGGIIIRENPLFDNFTPTSDLLEKESHLEVVSIMIIDV 60
           M+EQEQG +L KKS EQL+ESLKGGIIIR+NPLF+N TPTS+L +KESHLEVVS+M+IDV
Sbjct: 1   MQEQEQGFVLKKKSLEQLIESLKGGIIIRDNPLFNNSTPTSNLSDKESHLEVVSVMMIDV 60

Query: 61  TAEATMTRMERKINFLMKVVEERNHEIAALKDYMKAHEIVESSQTPAVKADDKGK 116
           TAEATM  ME+KINFLMKVVEER+HEIAALKD MKA E  ESSQT  VK  DKGK
Sbjct: 61  TAEATMAEMEKKINFLMKVVEERDHEIAALKDQMKACESAESSQTSVVKTTDKGK 115

The following BLAST results are available for this feature:

BLAST of PI0023852 vs.


Match Name	E-value	Identity	Description

BLAST of PI0023852 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLH2	1.2e-39	68.09	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CJ11	4.7e-39	67.63	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TCF9	4.7e-39	67.63	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7TSM3	4.0e-38	77.39	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7SSD3	4.0e-38	76.52	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of PI0023852 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11266.1	2.6e-39	68.09	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK11178.1	9.7e-39	67.63	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0038969.1	9.7e-39	67.63	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK04575.1	8.2e-38	77.39	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0046412.1	8.2e-38	77.39	retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14649.1 retrotranspos...	[more]

BLAST of PI0023852 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023852.1	PI0023852.1	mRNA