PI0023783 (gene) Melon (PI 482460) v1

Overview
NamePI0023783
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr11: 25367854 .. 25368063 (-)
RNA-Seq ExpressionPI0023783
SyntenyPI0023783
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACACGGACGCGGCCGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTCCCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGTCAAGGCAACCTAGAGTTCAGAGTCGACGACGACAACCAGCTTGAAATCGAAGACGTCTGGATTGTGGAACACATTAATTTTCTTTTATCTTTTAAATAA

mRNA sequence

ATGGACACGGACGCGGCCGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTCCCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGTCAAGGCAACCTAGAGTTCAGAGTCGACGACGACAACCAGCTTGAAATCGAAGACGTCTGGATTGTGGAACACATTAATTTTCTTTTATCTTTTAAATAA

Coding sequence (CDS)

ATGGACACGGACGCGGCCGCGGAGAACATAACGAATATCTGTACTATGAAGCACCTACAGACGTCCCAGATCCACAAGAGTACCAACAAGAACCAGAGAATCAAGAGGAGTCAAGGCAACCTAGAGTTCAGAGTCGACGACGACAACCAGCTTGAAATCGAAGACGTCTGGATTGTGGAACACATTAATTTTCTTTTATCTTTTAAATAA

Protein sequence

MDTDAAAENITNICTMKHLQTSQIHKSTNKNQRIKRSQGNLEFRVDDDNQLEIEDVWIVEHINFLLSFK
Homology
BLAST of PI0023783 vs. ExPASy TrEMBL
Match: A0A5D3C2V9 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G001060 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 1.0e-15
Identity = 47/67 (70.15%), Postives = 54/67 (80.60%), Query Frame = 0

Query: 1   MDTDAAAENITNICTMKHLQTSQIHKSTNKNQRIKRSQGNLEFRVDDDNQLEIEDVWIVE 60
           MDTD A  NI NIC MKHLQ  QI KSTNKNQR KR++ N+E RVD +NQLEI+DV +VE
Sbjct: 158 MDTDVAMGNIMNICIMKHLQMYQIDKSTNKNQRTKRTENNIELRVDVNNQLEIDDVRVVE 217

Query: 61  HINFLLS 68
           HI+FLLS
Sbjct: 218 HIDFLLS 224

BLAST of PI0023783 vs. ExPASy TrEMBL
Match: A0A5A7TDY5 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G00990 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.9e-14
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = 0

Query: 6   AAENITNICTMKHLQTSQIHKSTNKNQRIKRSQGNLEFRVDDDNQLEIEDVWIVEHINFL 65
           A  NITNIC MKHLQ  QI KSTNKNQR KR++ N+EFRV+ DNQL+I++V +VEHI+FL
Sbjct: 352 ALGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEVQVVEHIDFL 411

Query: 66  LSFK 70
           LS K
Sbjct: 412 LSIK 415

BLAST of PI0023783 vs. ExPASy TrEMBL
Match: A0A5A7VF64 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00200 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.1e-12
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MDTDAAAENITNICTMKHLQTSQIHKSTNKNQRIKRSQGNLEFRVDDDNQLEIEDV 57
           MD D A  NITNIC MKHLQ  QI KSTNKNQR KR++ N+EFRVD DNQLEI+DV
Sbjct: 135 MDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDVDNQLEIDDV 190

BLAST of PI0023783 vs. ExPASy TrEMBL
Match: A0A5A7TI03 (Stress-response A/B barrel domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00480 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 5.2e-04
Identity = 25/34 (73.53%), Postives = 30/34 (88.24%), Query Frame = 0

Query: 23 QIHKSTNKNQRIKRSQGNLEFRVDDDNQLEIEDV 57
          QI KSTNKNQR KR+Q N+EF+VD DNQLEI+D+
Sbjct: 27 QIDKSTNKNQRTKRTQNNIEFKVDIDNQLEIDDI 60

BLAST of PI0023783 vs. ExPASy TrEMBL
Match: A0A5D3CD18 (GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00530 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.8e-04
Identity = 26/41 (63.41%), Postives = 30/41 (73.17%), Query Frame = 0

Query: 1   MDTDAAAENITNICTMKHLQTSQIHKSTNKNQRIKRSQGNL 42
           MD D    NITNIC MKHLQ  QI KSTNKNQR KR++ ++
Sbjct: 106 MDMDVTMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENHI 146

BLAST of PI0023783 vs. NCBI nr
Match: KAA0040602.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK05644.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 2.1e-15
Identity = 47/67 (70.15%), Postives = 54/67 (80.60%), Query Frame = 0

Query: 1   MDTDAAAENITNICTMKHLQTSQIHKSTNKNQRIKRSQGNLEFRVDDDNQLEIEDVWIVE 60
           MDTD A  NI NIC MKHLQ  QI KSTNKNQR KR++ N+E RVD +NQLEI+DV +VE
Sbjct: 158 MDTDVAMGNIMNICIMKHLQMYQIDKSTNKNQRTKRTENNIELRVDVNNQLEIDDVRVVE 217

Query: 61  HINFLLS 68
           HI+FLLS
Sbjct: 218 HIDFLLS 224

BLAST of PI0023783 vs. NCBI nr
Match: KAA0041168.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 87.8 bits (216), Expect = 4.0e-14
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = 0

Query: 6   AAENITNICTMKHLQTSQIHKSTNKNQRIKRSQGNLEFRVDDDNQLEIEDVWIVEHINFL 65
           A  NITNIC MKHLQ  QI KSTNKNQR KR++ N+EFRV+ DNQL+I++V +VEHI+FL
Sbjct: 352 ALGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVNVDNQLKIDEVQVVEHIDFL 411

Query: 66  LSFK 70
           LS K
Sbjct: 412 LSIK 415

BLAST of PI0023783 vs. NCBI nr
Match: KAA0066693.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa] >TYK27843.1 mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 80.5 bits (197), Expect = 6.3e-12
Identity = 41/56 (73.21%), Postives = 45/56 (80.36%), Query Frame = 0

Query: 1   MDTDAAAENITNICTMKHLQTSQIHKSTNKNQRIKRSQGNLEFRVDDDNQLEIEDV 57
           MD D A  NITNIC MKHLQ  QI KSTNKNQR KR++ N+EFRVD DNQLEI+DV
Sbjct: 135 MDMDVAMGNITNICIMKHLQMYQIDKSTNKNQRTKRTENNIEFRVDVDNQLEIDDV 190

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3C2V91.0e-1570.15Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7TDY51.9e-1468.75Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7VF643.1e-1273.21Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
A0A5A7TI035.2e-0473.53Stress-response A/B barrel domain-containing protein OS=Cucumis melo var. makuwa... [more]
A0A5D3CD186.8e-0463.41GATA zinc finger domain-containing protein 10-like isoform X2 OS=Cucumis melo va... [more]
Match NameE-valueIdentityDescription
KAA0040602.12.1e-1570.15mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
KAA0041168.14.0e-1468.75serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
KAA0066693.16.3e-1273.21mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0023783.1PI0023783.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010073 meristem maintenance