PI0023702 (gene) Melon (PI 482460) v1

Overview
NamePI0023702
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionCACTA en-spm transposon protein
Locationchr01: 2421308 .. 2423586 (-)
RNA-Seq ExpressionPI0023702
SyntenyPI0023702
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTTGGAGGACATAGTGAAGAGCCTAGTACTTTGCAGTGGAAACAAAATCAGGAGACTACTATCTCCCACGTGCAGAGCTTGGCTACTCAAGTATCCCTATTGGTCAACACTATTAGTAGACTCAACACCCGATATGCAAAGCTTCCTTCCTAATCGGTAAGATGTGAGGAATGTTAGTGTCATCTCTACCATATGCTCTGTTGAAGAGTTTAATGCTCATGAGACTACTTTCAACTCGCTCGAAAGACGAGGAGTAAGATTTGATCCAACCTTGAGTTTAGATCCTTATGTTCTTGTTGCTCATTTCCCTAGTAGGTTAATTGTTGCTTAGAAAGTTGCACAGAAAAAGGAGGTGAAGTCTGCTCAATCCTCTGGTAAGAAAATGTTGGTAAAGGTTCCTTATGAGGAAAAGAAGGTAGAACAAGAAGATGAAATGAGACTACTATTCTAAGTAACATTTTGCTATATTTAAAAACACCCCTTATTTTTATATAATTTTAACCTTAATTGAAAATACTGTTGAAATTATTTACGAATTAACAAAATGTTATTCTCTATCAATAATAACATTTTTTTTGTCAAGTTATCATTATTATAATTTTTATGTCTATCACGATAGGTAGTGCAGTTTGCTATATTTGTAGGTTTTTTTTTTTTGTTAAACTTGAAAACAACTCTAATTAATTTTATGTGCAATATTTTCACACTAAAATGTTTAGGAAAATCTTAAAACATAATCCATACAGTGCAATCGATCGTGACCTTAATACACTAGGAAGCATAAACACTCTTTTTTGGAGAGAGTGTCGGTGTTGGACACGTGTTCGACACCCACACACACTTGACATATATTAGACATGCAACTTTATGTGTCAATTCTTTTTTTAGTTCGGACATGCAACGACATGCGAAGGGACCCTCTGAATGTTTTAATATTTTTTCAATATCATTAAAAAAAAATTAAAAGGAAACCTCTTTTGTAAAATACAGAAAAACTCTAGGACCCTCCCATCTTCAAGTCTCAGACACTTCATTTCGTTCAGATGATGCTGGCGACCGCTGCTCACCCTCTTTCGATCGGACGATGCCGATTAGACCAGCTACACTCCCCTTTGTTTTGTTTCTCGGTTTAAAGGTTTTTTCCTTTTTTTTTCTTTTCTTTTCTGTGTTTAACCTTTGAGAAAAAACAATATGCAACTCCAATTAGATCAGCCACATTTTTTTAAAAAACAATTAGGATTTTCTATTTGTATTGTAACTTGAAACTTTTTAATGAACTCAAACACAACTATTTATCTGAATATACTCTTCATTTATATTTTAAATAAGTATATATTGTTATGTTCTAACACATATGAGTAATTTATCTGTAAGAATTATCATGTCTCTAACGTGTCGTGTCATACTTTTCTAGAATTGGATGTATCACCATGTGTGTTGTGTATCGGTATTCATGCTTCCTAGTTAATATGTATATTGATCAACCTATTAAATCTAAAATAATTGATAGATACCTTTTTAAAAATAAATTAAAAAAAAAAAAAAAGAGACCCAAGGAAAGAAACCTTTCGAATATGATGCTTGTGATTTTAGCTTGAGTTCTTTACTACAAATTTTGGTTGGGGGAAATTAATGTATTTCACTCTTTTTGATGCAGGTAGGTCATGAGATTAGGTGCACTATTTATTAATATATCTATAAATTGCAAAGTTAAAGAGAAGAGAAAGGAGTGTACCCAATGGCAGGATTTGGAATTTTTGTTTAGGAATATAGTTTAAAACTTCTCAAAAATTTTAAAATGAGTTCAAAAAATTTAAATTACAAGGTTTTGTATCCTTAATAGAATTATCCAACTTTAAAAATATTTAAGATGCGTTTAAACTTTTAAATAAAAGAATTATAAGTTATTCATTTCTTGGTGCTAGCTATAAACATAATACGATATCGAAGTCCATGAAAGCCCATGAAGCTCAAATATTGTAAACCGAAGAAAGTACATGAGTAATTTTGTGTTAACCTGTATATATAATGTCTAAAACATTTAAACCATTATAAATATAGTTGGCAATGCAAGAGGAGATAAGAAAATCATCAGAAGATGGAGTTGAACCAACACTGGAGGCAATTATTTGTGAACAGATTTTGGAAAAACGATCTGGGCATATTAAAGGTCTTGGATGGAACGCAATCCCCAATGTACCAACATGTGTACATCGTTCAATGTGTTTGAGAAAGATATTGGGGATAAGTATGAAAAGCTTCAAGCAGAGGTGA

mRNA sequence

ATGCCTTTGGAGGACATAGTGAAGAGCCTAGTACTTTGCAGTGGAAACAAAATCAGGAGACTACTATCTCCCACGTGCAGAGCTTGGCTACTCAAGTATCCCTATTGGTCAACACTATTAGTAGACTCAACACCCGATATGCAAAGCTTCCTTCCTAATCGAAAAACTCTAGGACCCTCCCATCTTCAAGTCTCAGACACTTCATTTCGTTCAGATGATGCTGGCGACCGCTGCTCACCCTCTTTCGATCGGACGATGCCGATTAGACCAGCTACACTCCCCTTTGTTTTGTTTCTCGGTTTAAAGTTGGCAATGCAAGAGGAGATAAGAAAATCATCAGAAGATGGAGTTGAACCAACACTGGAGGCAATTATTTGTGAACAGATTTTGGAAAAACGATCTGGGCATATTAAAGGTCTTGGATGGAACGCAATCCCCAATGTACCAACATGTGTACATCGTTCAATGTGTTTGAGAAAGATATTGGGGATAAGTATGAAAAGCTTCAAGCAGAGGTGA

Coding sequence (CDS)

ATGCCTTTGGAGGACATAGTGAAGAGCCTAGTACTTTGCAGTGGAAACAAAATCAGGAGACTACTATCTCCCACGTGCAGAGCTTGGCTACTCAAGTATCCCTATTGGTCAACACTATTAGTAGACTCAACACCCGATATGCAAAGCTTCCTTCCTAATCGAAAAACTCTAGGACCCTCCCATCTTCAAGTCTCAGACACTTCATTTCGTTCAGATGATGCTGGCGACCGCTGCTCACCCTCTTTCGATCGGACGATGCCGATTAGACCAGCTACACTCCCCTTTGTTTTGTTTCTCGGTTTAAAGTTGGCAATGCAAGAGGAGATAAGAAAATCATCAGAAGATGGAGTTGAACCAACACTGGAGGCAATTATTTGTGAACAGATTTTGGAAAAACGATCTGGGCATATTAAAGGTCTTGGATGGAACGCAATCCCCAATGTACCAACATGTGTACATCGTTCAATGTGTTTGAGAAAGATATTGGGGATAAGTATGAAAAGCTTCAAGCAGAGGTGA

Protein sequence

MPLEDIVKSLVLCSGNKIRRLLSPTCRAWLLKYPYWSTLLVDSTPDMQSFLPNRKTLGPSHLQVSDTSFRSDDAGDRCSPSFDRTMPIRPATLPFVLFLGLKLAMQEEIRKSSEDGVEPTLEAIICEQILEKRSGHIKGLGWNAIPNVPTCVHRSMCLRKILGISMKSFKQR
Homology
[Close]
BLAST of PI0023702 vs. ExPASy TrEMBL
Match: A0A5A7UKB8 (DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43052G001590 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.5e-12
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 103 LAMQEEIRKSSEDGVEPTLEAIICEQILEKRSGHIKGLGWNAIPNVPTC 152
           +AMQEEIRKSSEDG +PT + II EQ+LEKRSGH KGLGW A PNV TC
Sbjct: 240 VAMQEEIRKSSEDGAQPTPKKIIYEQVLEKRSGHTKGLGWKATPNVATC 288

[Close]
BLAST of PI0023702 vs. ExPASy TrEMBL
Match: A0A5A7SMM8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold417G00980 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.2e-06
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 103 LAMQEEIRKSSEDGVEPTLEAIICEQILEKRSGHIKGLG 142
           +AMQEEI KSSEDG EPT EAIICE +L  R GH KGLG
Sbjct: 179 VAMQEEITKSSEDGSEPTPEAIICEWVLGNRLGHTKGLG 217

[Close]
BLAST of PI0023702 vs. ExPASy TrEMBL
Match: A0A5D3BM75 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1112G00400 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 6.2e-06
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 103 LAMQEEIRKSSEDGVEPTLEAIICEQILEKRSGHIKGLG 142
           +AMQEEI KSSEDG EPT EAIICE +L  R GH KGLG
Sbjct: 180 VAMQEEITKSSEDGSEPTPEAIICEWVLGNRLGHTKGLG 218

[Close]
BLAST of PI0023702 vs. ExPASy TrEMBL
Match: A0A5A7T089 (Transposon, En/Spm-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G002870 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.8e-04
Identity = 23/42 (54.76%), Postives = 29/42 (69.05%), Query Frame = 0 

Query: 105 MQEEIRKSSEDGVEPTLEAIICEQILEKRSGHIKGLGWNAIP 147
           M E    SS++G+EP LE  ICE++L KRSGH+KG GW   P
Sbjct: 827 MMELKTTSSQEGIEPLLEKEICERVLGKRSGHVKGQGWGPRP 868

[Close]
BLAST of PI0023702 vs. NCBI nr
Match: KAA0055007.1 (uncharacterized protein E6C27_scaffold43052G001590 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-12
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 103 LAMQEEIRKSSEDGVEPTLEAIICEQILEKRSGHIKGLGWNAIPNVPTC 152
           +AMQEEIRKSSEDG +PT + II EQ+LEKRSGH KGLGW A PNV TC
Sbjct: 240 VAMQEEIRKSSEDGAQPTPKKIIYEQVLEKRSGHTKGLGWKATPNVATC 288

[Close]
BLAST of PI0023702 vs. NCBI nr
Match: TYK00374.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-05
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 103 LAMQEEIRKSSEDGVEPTLEAIICEQILEKRSGHIKGLG 142
           +AMQEEI KSSEDG EPT EAIICE +L  R GH KGLG
Sbjct: 180 VAMQEEITKSSEDGSEPTPEAIICEWVLGNRLGHTKGLG 218

[Close]
BLAST of PI0023702 vs. NCBI nr
Match: KAA0025491.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 1.3e-05
Identity = 29/39 (74.36%), Postives = 31/39 (79.49%), Query Frame = 0 

Query: 103 LAMQEEIRKSSEDGVEPTLEAIICEQILEKRSGHIKGLG 142
           +AMQEEI KSSEDG EPT EAIICE +L  R GH KGLG
Sbjct: 179 VAMQEEITKSSEDGSEPTPEAIICEWVLGNRLGHTKGLG 217

The following BLAST results are available for this feature:
BLAST of PI0023702 vs.
Match NameE-valueIdentityDescription
BLAST of PI0023702 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UKB81.5e-1275.51DUF4218 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7SMM86.2e-0674.36CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
A0A5D3BM756.2e-0674.36CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A5A7T0895.8e-0454.76Transposon, En/Spm-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_... [more]
BLAST of PI0023702 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0055007.13.2e-1275.51uncharacterized protein E6C27_scaffold43052G001590 [Cucumis melo var. makuwa][more]
TYK00374.11.3e-0574.36CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
KAA0025491.11.3e-0574.36CACTA en-spm transposon protein [Cucumis melo var. makuwa][more]
BLAST of PI0023702 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0023702.1PI0023702.1mRNA