PI0023587 (gene) Melon (PI 482460) v1

Overview


Name	PI0023587
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr11: 23462566 .. 23463298 (-)
RNA-Seq Expression	PI0023587
Synteny	PI0023587

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAACGTCTTCAAGGGCCCCGAAGCACCACTGGACGAAAGAGGAGGATGCCATCCTCGTTGAATGTCTGGTGGAGTTGGTATCTTCTGGCGGGTGGAGGTCGGATAACGGAACTTTTAGACTCGGATACCATAGTCATCTACAGAAAATGATTGCCGAGAGGATGCCCGAACATAACATAATGGCTACGACGATAGATTACGGATCAAGACAACTAAAAGAGCATTCCAAGCGATATCTAAGATGAGGGGCCCGACGTGTAGTGGGTTCGGTTGGAATGATGAGCTAAAATGCATCATTGCCGAGAAAGACTTGTTCGATAGTTGGGTGAAGGTATGTTCTTTATTCTGTCCATTACTGTTCCTTTATAATTATAAATTGTCTAATTTGTTACCACAACAACACTTGTATGGAGTCATCCAGCCGCAAAGGGCCTCTTAAACAAACCCTTTCCCCACTACGACGACCTTTGCTACGTGTTCGGAAGAGATCGTGTAACAGGAGGTCGAGCTGAAACCTTCGACGATGTTGGGTCAAACGTGCCTCCAGGCTTCGAAGGATTTTCCCACTACGACGGGAACGATATGGAGAACCCAACGATGTACAGTCAGGGCCTGGACATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTGAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACGGGGAGGGCAGGCATTGGAGGCGGCATAA

mRNA sequence

ATGGCAACGTCTTCAAGGGCCCCGAAGCACCACTGGACGAAAGAGGAGGATGCCATCCTCGTTGAATGTCTGGTGGAGTTGGTATCTTCTGGCGGGTGGAGTCATCCAGCCGCAAAGGGCCTCTTAAACAAACCCTTTCCCCACTACGACGACCTTTGCTACGTGTTCGGAAGAGATCGTGTAACAGGAGGTCGAGCTGAAACCTTCGACGATGTTGGGTCAAACGTGCCTCCAGGCTTCGAAGGATTTTCCCACTACGACGGGAACGATATGGAGAACCCAACGATGTACAGTCAGGGCCTGGACATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTGAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACGGGGAGGGCAGGCATTGGAGGCGGCATAA

Coding sequence (CDS)

ATGGCAACGTCTTCAAGGGCCCCGAAGCACCACTGGACGAAAGAGGAGGATGCCATCCTCGTTGAATGTCTGGTGGAGTTGGTATCTTCTGGCGGGTGGAGTCATCCAGCCGCAAAGGGCCTCTTAAACAAACCCTTTCCCCACTACGACGACCTTTGCTACGTGTTCGGAAGAGATCGTGTAACAGGAGGTCGAGCTGAAACCTTCGACGATGTTGGGTCAAACGTGCCTCCAGGCTTCGAAGGATTTTCCCACTACGACGGGAACGATATGGAGAACCCAACGATGTACAGTCAGGGCCTGGACATGTCACCTGACGACATAATGACTCCACGATCGGTTCGTATGTCTGAGGCTAGGCCTGGTTCGAGCGGGTCGAAGAGGAAACGGGGAGGGCAGGCATTGGAGGCGGCATAA

Protein sequence

MATSSRAPKHHWTKEEDAILVECLVELVSSGGWSHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDVGSNVPPGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQALEAA

Homology

[Close]

BLAST of PI0023587 vs. ExPASy TrEMBL
Match: A0A5A7UHV9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00690 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 1.2e-36
Identity = 90/185 (48.65%), Postives = 108/185 (58.38%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDAILVECLVELVSSGGW--------------------------- 60
           M +SSR PKH WTKEE+A LVECLVELV+ GGW                           
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPVVL 60

Query: 61  ---------------------SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDV 120
                                SHPAAKGLLNK F HYD+L YVFG+DR TGGRAE+F D+
Sbjct: 61  GGMMKKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFVDI 120

Query: 121 GSNVPPGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGG 138
           GSN PPG++ F+     D++ P MYS GL+MSPDD+M  R+ R+SE R  SSGSKRKR G
Sbjct: 121 GSNDPPGYDAFAADVMPDIDFPPMYSSGLNMSPDDLMETRTARVSERRNVSSGSKRKRPG 180

[Close]

BLAST of PI0023587 vs. ExPASy TrEMBL
Match: A0A5D3BCA9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold986G00630 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.7e-36
Identity = 88/161 (54.66%), Postives = 103/161 (63.98%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDAILVECLVELVSSGGW--------------------------- 60
           M+TS+RAP+H WTKEE+  LVECL+ELVS GGW                           
Sbjct: 1   MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQ 60

Query: 61  SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDVGSNVP-PGFEGFSHYDGNDME 120
           SHPAAKGLLNKPFP+YD+L YVFGRDR TG   ETF DV SN P  G++ F   DGN+ E
Sbjct: 61  SHPAAKGLLNKPFPYYDELTYVFGRDRTTGRFTETFTDVRSNEPGGGYDRFDMGDGNE-E 120

Query: 121 NPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ 134
            P +YSQG+D+S DD+   +  R SE R GSSGSKRKRG Q
Sbjct: 121 FPPVYSQGIDLSQDDVRASQPSRASEGRTGSSGSKRKRGSQ 160

[Close]

BLAST of PI0023587 vs. ExPASy TrEMBL
Match: A0A5A7TYQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002060 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.7e-36
Identity = 89/185 (48.11%), Postives = 108/185 (58.38%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDAILVECLVELVSSGGW--------------------------- 60
           M +SSR PKH WTKEE+A LVECLVELV++GGW                           
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFLPGYLNQLARMMAFKIPVVL 60

Query: 61  ---------------------SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDV 120
                                SHPAAKGLLNK F HYD+L YVFG+DR TGGRAE+F D+
Sbjct: 61  GGMMKKKCIIAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADI 120

Query: 121 GSNVPPGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGG 138
           GSN P G++ F+  D +D +   MYS GL+MSPDD+M  R+ R+SE R  SSGSKRKR G
Sbjct: 121 GSNDPAGYDAFAADDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSG 180

[Close]

BLAST of PI0023587 vs. ExPASy TrEMBL
Match: A0A5A7V4P8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001290 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 4.6e-36
Identity = 88/161 (54.66%), Postives = 103/161 (63.98%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDAILVECLVELVSSGGW--------------------------- 60
           M+TS+RAP+H WTK+E+  LVECL+ELVS GGW                           
Sbjct: 1   MSTSNRAPRHVWTKKEEGTLVECLMELVSMGGWKSDNGTFRPRYIAQLVRMMAEKLPGCQ 60

Query: 61  SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDVGSNVP-PGFEGFSHYDGNDME 120
           SHPAAKGLLNKPFP+YD+L YVFGRDR TG  AETF DVGSN P  G++ F   DGN+ +
Sbjct: 61  SHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGNGYDKFDMGDGNE-D 120

Query: 121 NPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ 134
            P MYSQG+D+S DD+   R  R  E R GSSGSKRKR  Q
Sbjct: 121 FPPMYSQGIDLSQDDVRASRPSRALEGRTGSSGSKRKRESQ 160

[Close]

BLAST of PI0023587 vs. ExPASy TrEMBL
Match: A0A5A7TB06 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold278G00390 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 7.9e-36
Identity = 85/148 (57.43%), Postives = 100/148 (67.57%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDAILVECLVELVSSGGW---------------SHPAAKGLLNKP 60
           M+TS+RAP+H WTKEE+  LVECL+ELV  GGW               SHPAAKGLLNK 
Sbjct: 89  MSTSNRAPRHVWTKEEEDTLVECLMELVLMGGWKSDNGTFRPGYLAQLSHPAAKGLLNKL 148

Query: 61  FPHYDDLCYVFGRDRVTGGRAETFDDVGSNVPPGFEGFSHYDGNDMENPTMYSQGLDMSP 120
           FP+YD+  YVFGRDR TG  A+TF DVGSN P G++ F   DGN+ E P +YSQ +D+S 
Sbjct: 149 FPYYDECTYVFGRDRATGRLAKTFVDVGSNEPGGYDIFDMGDGNE-EFPIVYSQRIDLSQ 208

Query: 121 DDIMTPRSVRMSEARPGSSGSKRKRGGQ 134
            D+   R  R SE R GSSGSKRKRG Q
Sbjct: 209 KDVRASRPYRTSEGRTGSSGSKRKRGSQ 235

[Close]

BLAST of PI0023587 vs. NCBI nr
Match: KAA0054147.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 162.5 bits (410), Expect = 2.5e-36
Identity = 90/185 (48.65%), Postives = 108/185 (58.38%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDAILVECLVELVSSGGW--------------------------- 60
           M +SSR PKH WTKEE+A LVECLVELV+ GGW                           
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNVGGWRSDNGTFRPGYLNQLARMMAFKIPVVL 60

Query: 61  ---------------------SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDV 120
                                SHPAAKGLLNK F HYD+L YVFG+DR TGGRAE+F D+
Sbjct: 61  GGMMKKKCIVAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFVDI 120

Query: 121 GSNVPPGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGG 138
           GSN PPG++ F+     D++ P MYS GL+MSPDD+M  R+ R+SE R  SSGSKRKR G
Sbjct: 121 GSNDPPGYDAFAADVMPDIDFPPMYSSGLNMSPDDLMETRTARVSERRNVSSGSKRKRPG 180

[Close]

BLAST of PI0023587 vs. NCBI nr
Match: KAA0048280.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 5.6e-36
Identity = 89/185 (48.11%), Postives = 108/185 (58.38%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDAILVECLVELVSSGGW--------------------------- 60
           M +SSR PKH WTKEE+A LVECLVELV++GGW                           
Sbjct: 1   MTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFLPGYLNQLARMMAFKIPVVL 60

Query: 61  ---------------------SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDV 120
                                SHPAAKGLLNK F HYD+L YVFG+DR TGGRAE+F D+
Sbjct: 61  GGMMKKKCIIAEKEVFDDWVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADI 120

Query: 121 GSNVPPGFEGFSHYDGNDMENPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGG 138
           GSN P G++ F+  D +D +   MYS GL+MSPDD+M  R+ R+SE R  SSGSKRKR G
Sbjct: 121 GSNDPAGYDAFAADDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSG 180

[Close]

BLAST of PI0023587 vs. NCBI nr
Match: KAA0062786.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ96767.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.4 bits (407), Expect = 5.6e-36
Identity = 88/161 (54.66%), Postives = 103/161 (63.98%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDAILVECLVELVSSGGW--------------------------- 60
           M+TS+RAP+H WTKEE+  LVECL+ELVS GGW                           
Sbjct: 1   MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFCPGYLAQLVRMMAEKLPGCQ 60

Query: 61  SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDVGSNVP-PGFEGFSHYDGNDME 120
           SHPAAKGLLNKPFP+YD+L YVFGRDR TG   ETF DV SN P  G++ F   DGN+ E
Sbjct: 61  SHPAAKGLLNKPFPYYDELTYVFGRDRTTGRFTETFTDVRSNEPGGGYDRFDMGDGNE-E 120

Query: 121 NPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ 134
            P +YSQG+D+S DD+   +  R SE R GSSGSKRKRG Q
Sbjct: 121 FPPVYSQGIDLSQDDVRASQPSRASEGRTGSSGSKRKRGSQ 160

[Close]

BLAST of PI0023587 vs. NCBI nr
Match: KAA0062548.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK28770.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 9.6e-36
Identity = 88/161 (54.66%), Postives = 103/161 (63.98%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDAILVECLVELVSSGGW--------------------------- 60
           M+TS+RAP+H WTK+E+  LVECL+ELVS GGW                           
Sbjct: 1   MSTSNRAPRHVWTKKEEGTLVECLMELVSMGGWKSDNGTFRPRYIAQLVRMMAEKLPGCQ 60

Query: 61  SHPAAKGLLNKPFPHYDDLCYVFGRDRVTGGRAETFDDVGSNVP-PGFEGFSHYDGNDME 120
           SHPAAKGLLNKPFP+YD+L YVFGRDR TG  AETF DVGSN P  G++ F   DGN+ +
Sbjct: 61  SHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGNGYDKFDMGDGNE-D 120

Query: 121 NPTMYSQGLDMSPDDIMTPRSVRMSEARPGSSGSKRKRGGQ 134
            P MYSQG+D+S DD+   R  R  E R GSSGSKRKR  Q
Sbjct: 121 FPPMYSQGIDLSQDDVRASRPSRALEGRTGSSGSKRKRESQ 160

[Close]

BLAST of PI0023587 vs. NCBI nr
Match: KAA0040490.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK23472.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 159.8 bits (403), Expect = 1.6e-35
Identity = 85/148 (57.43%), Postives = 100/148 (67.57%), Query Frame = 0


Query: 1   MATSSRAPKHHWTKEEDAILVECLVELVSSGGW---------------SHPAAKGLLNKP 60
           M+TS+RAP+H WTKEE+  LVECL+ELV  GGW               SHPAAKGLLNK 
Sbjct: 89  MSTSNRAPRHVWTKEEEDTLVECLMELVLMGGWKSDNGTFRPGYLAQLSHPAAKGLLNKL 148

Query: 61  FPHYDDLCYVFGRDRVTGGRAETFDDVGSNVPPGFEGFSHYDGNDMENPTMYSQGLDMSP 120
           FP+YD+  YVFGRDR TG  A+TF DVGSN P G++ F   DGN+ E P +YSQ +D+S 
Sbjct: 149 FPYYDECTYVFGRDRATGRLAKTFVDVGSNEPGGYDIFDMGDGNE-EFPIVYSQRIDLSQ 208

Query: 121 DDIMTPRSVRMSEARPGSSGSKRKRGGQ 134
            D+   R  R SE R GSSGSKRKRG Q
Sbjct: 209 KDVRASRPYRTSEGRTGSSGSKRKRGSQ 235

The following BLAST results are available for this feature:

BLAST of PI0023587 vs.


Match Name	E-value	Identity	Description

BLAST of PI0023587 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UHV9	1.2e-36	48.65	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BCA9	2.7e-36	54.66	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TYQ6	2.7e-36	48.11	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7V4P8	4.6e-36	54.66	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TB06	7.9e-36	57.43	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0023587 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054147.1	2.5e-36	48.65	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048280.1	5.6e-36	48.11	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0062786.1	5.6e-36	54.66	retrotransposon protein [Cucumis melo var. makuwa] >TYJ96767.1 retrotransposon p...	[more]
KAA0062548.1	9.6e-36	54.66	retrotransposon protein [Cucumis melo var. makuwa] >TYK28770.1 retrotransposon p...	[more]
KAA0040490.1	1.6e-35	57.43	retrotransposon protein [Cucumis melo var. makuwa] >TYK23472.1 retrotransposon p...	[more]

BLAST of PI0023587 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..138
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 34..129 coord: 3..33

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023587.1	PI0023587.1	mRNA