PI0023561 (gene) Melon (PI 482460) v1

Overview


Name	PI0023561
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	protein LOL1
Location	chr04: 32706042 .. 32707531 (-)
RNA-Seq Expression	PI0023561
Synteny	PI0023561

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCTTATACACAACCTTCTAATGGTATTCACTCTCTTTCAAAACTTTACTCATTTCTTAACTACATTCTTCTTGTTTGGTTGCTGAGAAAATGTATTAGTTTCCCATTTTCCAATTTTCTCATCAATGGAGCTGTAAATCCTATTGTTTGATGTTGCATATCCATAGCCTTGATTCTAAATTAGGTTTTATGAGAGATTCTTCAAGAAGAGGCTTATGTTTTTTAGAATTAGATTGGGTTTTTTTTATGTGTTTGGTTTCATTAGATCAGTGATTTGTTATTTGGTACTCAACCGAGGTTTGAAATGTGCATTTTGGTTGTTGGTCATTAGCCACACAGAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTTACTGCCGTACCGCCACCCGGTAATTTTGTTCTTCCTCTTCCTTTTCACCGTCTAGCTTGTGCCGATGCTAAATTTGAAATTTCTGTTGGAGAATTCTGTTGTTTTTGTTTAGAAGAAAGATTGGAAGTTTTAGTTACTTTTTGTGTAAAACAGGCACAGAGATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGAGGTGCCACGAGCGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGGTATGGAAATCTCAGTAACTTTCAGAAACTCGAATCAAAATTACATTAGACATCTCAAACAAATCTTGGTAAATAGCGTAGGCTGTTTAGAACAATTCAGTCCTAGCTAACTCCCATCATGAATAGCAACATTATGTTATTGATTGATTCACTGTTCACTAAAAGCATATCGTTAGAAAATGGTTTAGAGATACAAATCTTTGTTTCTTAAGGCAAAACTCATGTGAATCGAGCGATGAATCTATACTGTTTCAGCGAATCAGGTGGCGCACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAATATGGAGCACGGTCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGGTAAGTAAAAAAAAAACTTCCTTCTTGTTGAACTCTCTTTTTCTATACGAACGTTGTTGAACTCTCTTTTTCTATACAAACATTGTTGAATTCTCTTTTTCTATACGAACATTGTTGAACTCTCTTTTTCTATACGAACACGAACTCGGAATAAAGTTATTCGATCTAAATCATCGGGTTGTTGAATTAACCATCATCAGAAAGCTTAGAACATCAAACATGGCTCTGATAGTACTCAAAACTCTTAAATCTATGCTTTTAAAGTTCTAGCTCTATCTTTCCATTGCCATTTCTTACTTGAATATGAAGAGAAGCCATACATTCTAGTATCTCACACTATCAATGTCTTACGTTGTAGATGTCAACGAGTGCAATTGATCAAAAAGCATAA

mRNA sequence

ATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCTTATACACAACCTTCTAATGCCACACAGAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTTACTGCCGTACCGCCACCCGGCACAGAGATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGAGGTGCCACGAGCGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGCGAATCAGGTGGCGCACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAATATGGAGCACGGTCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGATGTCAACGAGTGCAATTGATCAAAAAGCATAA

Coding sequence (CDS)

ATGCCACCAGTTCCTCTTGCTCCATATCCAACCCCTCCAGCTCCTTATACACAACCTTCTAATGCCACACAGAGCCAACTTGTGTGCTCAGGATGCAGAAACCTTTTACTTTATCCTGTTGGGGCAACCTCTGTTTGCTGTGCTGTTTGTAATGCAGTTACTGCCGTACCGCCACCCGGCACAGAGATGGCACAATTGGTGTGTGGAGGCTGCCATACTCTTCTCATGTACATCCGAGGTGCCACGAGCGTCCAATGTTCTTGTTGCCACACTGTCAACTTAGCTTTGGAAGCGAATCAGGTGGCGCACGTTAGCTGCGGGAACTGCAGGATGCTACTGATGTATCAATATGGAGCACGGTCAGTGAAATGTGCAGTATGCAATTTTGTAACATCAGTTGGGATGTCAACGAGTGCAATTGATCAAAAAGCATAA

Protein sequence

MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMSTSAIDQKA

Homology

[Close]

BLAST of PI0023561 vs. ExPASy Swiss-Prot
Match: Q93ZB1 (Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 8.7e-67
Identity = 129/150 (86.00%), Postives = 131/150 (87.33%), Query Frame = 0


Query: 3   PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPPAP   PS  T         QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSVGMSTSAIDQK 144
           MYQYGARSVKCAVCNFVTSVG STS  D K
Sbjct: 122 MYQYGARSVKCAVCNFVTSVGGSTSTTDSK 151

[Close]

BLAST of PI0023561 vs. ExPASy Swiss-Prot
Match: Q0J7V9 (Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 4.8e-65
Identity = 123/141 (87.23%), Postives = 128/141 (90.78%), Query Frame = 0


Query: 3   PVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTE 62
           PVPLAPYPTPP P+T P N  QSQLVCSGCRNLL+YP GATSVCCAVC+ VTAVP PGTE
Sbjct: 43  PVPLAPYPTPPVPFT-PPNGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTE 102

Query: 63  MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSV 122
           MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLA+EANQVAHV+CGNCRMLLMYQYGARSV
Sbjct: 103 MAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSV 162

Query: 123 KCAVCNFVTSVGMSTSAIDQK 144
           KCAVCNFVTSVG S    DQK
Sbjct: 163 KCAVCNFVTSVGASPGT-DQK 181

[Close]

BLAST of PI0023561 vs. ExPASy Swiss-Prot
Match: Q2QMB3 (Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.0e-39
Identity = 74/115 (64.35%), Postives = 93/115 (80.87%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTA-VPPPGTEMAQLVCGGCHTLLMYIRGAT 83
           QSQ+VC GCRN+LLYP GA SVCCAVC+AV++  P PG ++A L+CGGC TLLMY R AT
Sbjct: 2   QSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNAT 61

Query: 84  SVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMST 138
           SV+CSCC TVNL    + +AH++CG C+ +LMY YGA SVKCA+CNF+T+ GM+T
Sbjct: 62  SVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNT 116

[Close]

BLAST of PI0023561 vs. ExPASy Swiss-Prot
Match: Q6ASS2 (Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 5.9e-39
Identity = 75/118 (63.56%), Postives = 90/118 (76.27%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG--TEMAQLVCGGCHTLLMYIRGA 83
           QSQ+VC GCR++L YP GA SVCCA+C A+T VPPP    EMA L+CGGC TLLMY R A
Sbjct: 2   QSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRNA 61

Query: 84  TSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMSTSA 140
            +V+CSCC TVNL    N +AHVSCG CR  LMY YGA SVKCA+C+++T+ GM+T A
Sbjct: 62  DTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVA 119

[Close]

BLAST of PI0023561 vs. ExPASy Swiss-Prot
Match: P94077 (Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.0e-35
Identity = 74/128 (57.81%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 141
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

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BLAST of PI0023561 vs. ExPASy TrEMBL
Match: A0A0A0LEE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902960 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 6.3e-76
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTSVGMSTSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

[Close]

BLAST of PI0023561 vs. ExPASy TrEMBL
Match: A0A1S3CQ35 (protein LOL1 OS=Cucumis melo OX=3656 GN=LOC103503523 PE=4 SV=1)

HSP 1 Score: 290.0 bits (741), Expect = 5.3e-75
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTSVGMSTSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

[Close]

BLAST of PI0023561 vs. ExPASy TrEMBL
Match: A0A6J1GKN9 (protein LOL1-like OS=Cucurbita moschata OX=3662 GN=LOC111454822 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.2e-74
Identity = 140/144 (97.22%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 SVKCAVCNFVTSIGMTTSAIDQKA 144

[Close]

BLAST of PI0023561 vs. ExPASy TrEMBL
Match: A0A6J1I7B6 (protein LOL1-like OS=Cucurbita maxima OX=3661 GN=LOC111470654 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 2.9e-73
Identity = 140/145 (96.55%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPA-PYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60
           MPPVPLAPYPTPPA PY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP
Sbjct: 1   MPPVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60

Query: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120
           GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
Sbjct: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120

Query: 121 RSVKCAVCNFVTSVGMSTSAIDQKA 145
           RSVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 RSVKCAVCNFVTSIGMTTSAIDQKA 145

[Close]

BLAST of PI0023561 vs. ExPASy TrEMBL
Match: A0A6J1ET02 (protein LOL1 OS=Cucurbita moschata OX=3662 GN=LOC111437302 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 3.8e-73
Identity = 138/144 (95.83%), Postives = 140/144 (97.22%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPP PYT P+N  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPPPYTPPANTAQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTSVGMSTSA+DQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAVDQKA 144

[Close]

BLAST of PI0023561 vs. NCBI nr
Match: XP_004148490.1 (protein LOL1 [Cucumis sativus] >XP_011652655.1 protein LOL1 [Cucumis sativus] >XP_011652656.1 protein LOL1 [Cucumis sativus] >XP_011652657.1 protein LOL1 [Cucumis sativus] >XP_031737667.1 protein LOL1 [Cucumis sativus] >XP_031737668.1 protein LOL1 [Cucumis sativus] >KGN60405.1 hypothetical protein Csa_001040 [Cucumis sativus])

HSP 1 Score: 293.1 bits (749), Expect = 1.3e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTSVGMSTSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

[Close]

BLAST of PI0023561 vs. NCBI nr
Match: XP_008465951.1 (PREDICTED: protein LOL1 [Cucumis melo] >XP_008465952.1 PREDICTED: protein LOL1 [Cucumis melo] >XP_008465953.1 PREDICTED: protein LOL1 [Cucumis melo] >XP_008465954.1 PREDICTED: protein LOL1 [Cucumis melo] >XP_016903577.1 PREDICTED: protein LOL1 [Cucumis melo])

HSP 1 Score: 290.0 bits (741), Expect = 1.1e-74
Identity = 143/144 (99.31%), Postives = 143/144 (99.31%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVP PG
Sbjct: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPAPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTSVGMSTSAIDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSAIDQKA 144

[Close]

BLAST of PI0023561 vs. NCBI nr
Match: XP_022952054.1 (protein LOL1-like [Cucurbita moschata] >XP_022952055.1 protein LOL1-like [Cucurbita moschata] >XP_023553673.1 protein LOL1-like [Cucurbita pepo subsp. pepo] >KAG6571844.1 Protein LOL1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 288.9 bits (738), Expect = 2.4e-74
Identity = 140/144 (97.22%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPPAPY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG
Sbjct: 1   MPPVPLAPYPTPPAPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 SVKCAVCNFVTSIGMTTSAIDQKA 144

[Close]

BLAST of PI0023561 vs. NCBI nr
Match: XP_038887483.1 (protein LOL1 isoform X2 [Benincasa hispida])

HSP 1 Score: 287.3 bits (734), Expect = 7.1e-74
Identity = 140/144 (97.22%), Postives = 141/144 (97.92%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPAPYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPG 60
           MPPVPLAPYPTPP PYTQP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVT VPPPG
Sbjct: 1   MPPVPLAPYPTPPTPYTQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPG 60

Query: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120
           TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR
Sbjct: 61  TEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGAR 120

Query: 121 SVKCAVCNFVTSVGMSTSAIDQKA 145
           SVKCAVCNFVTSVGMSTS IDQKA
Sbjct: 121 SVKCAVCNFVTSVGMSTSTIDQKA 144

[Close]

BLAST of PI0023561 vs. NCBI nr
Match: XP_022972004.1 (protein LOL1-like [Cucurbita maxima] >XP_022972005.1 protein LOL1-like [Cucurbita maxima])

HSP 1 Score: 284.3 bits (726), Expect = 6.0e-73
Identity = 140/145 (96.55%), Postives = 144/145 (99.31%), Query Frame = 0


Query: 1   MPPVPLAPYPTPPA-PYTQPSNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60
           MPPVPLAPYPTPPA PY+QP+NATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP
Sbjct: 1   MPPVPLAPYPTPPAQPYSQPANATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPP 60

Query: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120
           GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA
Sbjct: 61  GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGA 120

Query: 121 RSVKCAVCNFVTSVGMSTSAIDQKA 145
           RSVKCAVCNFVTS+GM+TSAIDQKA
Sbjct: 121 RSVKCAVCNFVTSIGMTTSAIDQKA 145

[Close]

BLAST of PI0023561 vs. TAIR 10
Match: AT1G32540.2 (lsd one like 1 )

HSP 1 Score: 254.2 bits (648), Expect = 6.2e-68
Identity = 129/150 (86.00%), Postives = 131/150 (87.33%), Query Frame = 0


Query: 3   PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPPAP   PS  T         QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSVGMSTSAIDQK 144
           MYQYGARSVKCAVCNFVTSVG STS  D K
Sbjct: 122 MYQYGARSVKCAVCNFVTSVGGSTSTTDSK 151

[Close]

BLAST of PI0023561 vs. TAIR 10
Match: AT1G32540.3 (lsd one like 1 )

HSP 1 Score: 254.2 bits (648), Expect = 6.2e-68
Identity = 129/150 (86.00%), Postives = 131/150 (87.33%), Query Frame = 0


Query: 3   PVPLAPYPTPPAPYTQPSNAT---------QSQLVCSGCRNLLLYPVGATSVCCAVCNAV 62
           PVPLAPYPTPPAP   PS  T         QSQLVCSGCRNLL+YPVGATSVCCAVCNAV
Sbjct: 2   PVPLAPYPTPPAPALAPSYNTPPANGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAV 61

Query: 63  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVSCGNCRMLL 122
           TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHV+CGNC MLL
Sbjct: 62  TAVPPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 121

Query: 123 MYQYGARSVKCAVCNFVTSVGMSTSAIDQK 144
           MYQYGARSVKCAVCNFVTSVG STS  D K
Sbjct: 122 MYQYGARSVKCAVCNFVTSVGGSTSTTDSK 151

[Close]

BLAST of PI0023561 vs. TAIR 10
Match: AT1G32540.1 (lsd one like 1 )

HSP 1 Score: 236.1 bits (601), Expect = 1.7e-62
Identity = 114/124 (91.94%), Postives = 117/124 (94.35%), Query Frame = 0


Query: 20  SNATQSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 79
           S + QSQLVCSGCRNLL+YPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR
Sbjct: 61  STSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIR 120

Query: 80  GATSVQCSCCHTVNLALEANQVAHVSCGNCRMLLMYQYGARSVKCAVCNFVTSVGMSTSA 139
           GATSVQCSCCHTVNLALEANQVAHV+CGNC MLLMYQYGARSVKCAVCNFVTSVG STS 
Sbjct: 121 GATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGSTST 180

Query: 140 IDQK 144
            D K
Sbjct: 181 TDSK 184

[Close]

BLAST of PI0023561 vs. TAIR 10
Match: AT4G20380.2 (LSD1 zinc finger family protein )

HSP 1 Score: 149.1 bits (375), Expect = 2.8e-36
Identity = 74/128 (57.81%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 7   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 66

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 141
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 67  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 126

[Close]

BLAST of PI0023561 vs. TAIR 10
Match: AT4G20380.1 (LSD1 zinc finger family protein )

HSP 1 Score: 149.1 bits (375), Expect = 2.8e-36
Identity = 74/128 (57.81%), Postives = 91/128 (71.09%), Query Frame = 0


Query: 24  QSQLVCSGCRNLLLYPVGATSVCCAVCNAVTAVPPPGT--EMAQLVCGGCHTLLMYIRGA 83
           Q QLVC GCRNLL+YP GA++V CA+CN +  VPPP    +MA ++CGGC T+LMY RGA
Sbjct: 2   QDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGA 61

Query: 84  TSVQCSCCHTVNLA-LEANQVAH--------VSCGNCRMLLMYQYGARSVKCAVCNFVTS 141
           +SV+CSCC T NL    +NQVAH        ++CG+CR  LMY YGA SVKCAVC FVT+
Sbjct: 62  SSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTN 121

The following BLAST results are available for this feature:

BLAST of PI0023561 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q93ZB1	8.7e-67	86.00	Protein LOL1 OS=Arabidopsis thaliana OX=3702 GN=LOL1 PE=2 SV=1	[more]
Q0J7V9	4.8e-65	87.23	Protein LSD1 OS=Oryza sativa subsp. japonica OX=39947 GN=LSD1 PE=2 SV=1	[more]
Q2QMB3	2.0e-39	64.35	Protein LOL2 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL2 PE=2 SV=1	[more]
Q6ASS2	5.9e-39	63.56	Protein LOL3 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL3 PE=2 SV=1	[more]
P94077	4.0e-35	57.81	Protein LSD1 OS=Arabidopsis thaliana OX=3702 GN=LSD1 PE=1 SV=1	[more]

BLAST of PI0023561 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEE4	6.3e-76	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G902960 PE=4 SV=1	[more]
A0A1S3CQ35	5.3e-75	99.31	protein LOL1 OS=Cucumis melo OX=3656 GN=LOC103503523 PE=4 SV=1	[more]
A0A6J1GKN9	1.2e-74	97.22	protein LOL1-like OS=Cucurbita moschata OX=3662 GN=LOC111454822 PE=4 SV=1	[more]
A0A6J1I7B6	2.9e-73	96.55	protein LOL1-like OS=Cucurbita maxima OX=3661 GN=LOC111470654 PE=4 SV=1	[more]
A0A6J1ET02	3.8e-73	95.83	protein LOL1 OS=Cucurbita moschata OX=3662 GN=LOC111437302 PE=4 SV=1	[more]

BLAST of PI0023561 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004148490.1	1.3e-75	100.00	protein LOL1 [Cucumis sativus] >XP_011652655.1 protein LOL1 [Cucumis sativus] >X...	[more]
XP_008465951.1	1.1e-74	99.31	PREDICTED: protein LOL1 [Cucumis melo] >XP_008465952.1 PREDICTED: protein LOL1 [...	[more]
XP_022952054.1	2.4e-74	97.22	protein LOL1-like [Cucurbita moschata] >XP_022952055.1 protein LOL1-like [Cucurb...	[more]
XP_038887483.1	7.1e-74	97.22	protein LOL1 isoform X2 [Benincasa hispida]	[more]
XP_022972004.1	6.0e-73	96.55	protein LOL1-like [Cucurbita maxima] >XP_022972005.1 protein LOL1-like [Cucurbit...	[more]

BLAST of PI0023561 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32540.2	6.2e-68	86.00	lsd one like 1	[more]
AT1G32540.3	6.2e-68	86.00	lsd one like 1	[more]
AT1G32540.1	1.7e-62	91.94	lsd one like 1	[more]
AT4G20380.2	2.8e-36	57.81	LSD1 zinc finger family protein	[more]
AT4G20380.1	2.8e-36	57.81	LSD1 zinc finger family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 106..130 e-value: 8.3E-13 score: 47.9 coord: 68..92 e-value: 1.5E-12 score: 47.1 coord: 29..53 e-value: 8.6E-11 score: 41.5
IPR005735	Zinc finger, LSD1-type	TIGRFAM	TIGR01053	TIGR01053	coord: 65..94 e-value: 8.6E-15 score: 52.1 coord: 26..56 e-value: 9.7E-13 score: 45.5 coord: 103..133 e-value: 1.8E-11 score: 41.4
IPR040319	LSD1-like	PANTHER	PTHR31747	PROTEIN LSD1	coord: 3..141
None	No IPR available	PANTHER	PTHR31747:SF1	PROTEIN LOL1	coord: 3..141
IPR036280	Multiheme cytochrome superfamily	SUPERFAMILY	48695	Multiheme cytochromes	coord: 29..127

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023561.1	PI0023561.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus