Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTCAAAGTTTTTATTAGCAATATAATCATAATGTCAAAAACAGGGGCAAAGAATGAAGAGGCAACAGTAGTATCTATAGATACTGAAAATGAAAATAGAAAGGATAGAGAAGAGAAGAACAATGGTTGGATGGGACCAGGAGATGTGGATTTTGTAATGGTAAGCCCTTCAATTTCTCTGCTCTTTTTGTTTCTCCCTCTGCCCTCTATCGGTTATTAGTGGTTGGATGGGACTTCATTACTGTTTCATTTTCTTTTTCTCATCTTATTATTTGTCAATTTCACCACAGGTTGTAGTAACATTCATCGCAGCCGTGGCATTCCAAGTAGGAACGAATCCACCGGGCAGTGTATGGCAAGAGGACAAGAATGGGTTTACTGCAGGTAAATCAATAATGGCTTCAAAATCACCTTCTGAATACAAAAAATTCATGGCGGGAGTGACATTATGTCTTGCATTTTCATTGATCCAGTTAAGTGTGATGTTATTCAAATGGTATCTCAAAAGTTATTCAGTTAGGAGAATGATTATGTACATACTGATGCTATGTACAATAGCGCCAATGATTGTTGCGTATTGGGCCTCTGTTAAAGCTTTGACACCTGGTGAAAAATTAATGTCTGAGATCACTGCTACCATATGGTCTATTTTGGGAGTCTATCTTATTGGCCTCCCATTTGTTCTACTTTACTACCTAGTCAAGAAATTTTTGTGAGTTATGTCATTTTCCTAATATTTTATCTTGTATTAATTTCCTTCATTCAT
mRNA sequence
CTTCAAAGTTTTTATTAGCAATATAATCATAATGTCAAAAACAGGGGCAAAGAATGAAGAGGCAACAGTAGTATCTATAGATACTGAAAATGAAAATAGAAAGGATAGAGAAGAGAAGAACAATGGTTGGATGGGACCAGGAGATGTGGATTTTGTAATGGTTGTAGTAACATTCATCGCAGCCGTGGCATTCCAAGTAGGAACGAATCCACCGGGCAGTGTATGGCAAGAGGACAAGAATGGGTTTACTGCAGGTAAATCAATAATGGCTTCAAAATCACCTTCTGAATACAAAAAATTCATGGCGGGAGTGACATTATGTCTTGCATTTTCATTGATCCAGTTAAGTGTGATGTTATTCAAATGGTATCTCAAAAGTTATTCAGTTAGGAGAATGATTATGTACATACTGATGCTATGTACAATAGCGCCAATGATTGTTGCGTATTGGGCCTCTGTTAAAGCTTTGACACCTGGTGAAAAATTAATGTCTGAGATCACTGCTACCATATGGTCTATTTTGGGAGTCTATCTTATTGGCCTCCCATTTGTTCTACTTTACTACCTAGTCAAGAAATTTTTGTGAGTTATGTCATTTTCCTAATATTTTATCTTGTATTAATTTCCTTCATTCAT
Coding sequence (CDS)
ATGTCAAAAACAGGGGCAAAGAATGAAGAGGCAACAGTAGTATCTATAGATACTGAAAATGAAAATAGAAAGGATAGAGAAGAGAAGAACAATGGTTGGATGGGACCAGGAGATGTGGATTTTGTAATGGTTGTAGTAACATTCATCGCAGCCGTGGCATTCCAAGTAGGAACGAATCCACCGGGCAGTGTATGGCAAGAGGACAAGAATGGGTTTACTGCAGGTAAATCAATAATGGCTTCAAAATCACCTTCTGAATACAAAAAATTCATGGCGGGAGTGACATTATGTCTTGCATTTTCATTGATCCAGTTAAGTGTGATGTTATTCAAATGGTATCTCAAAAGTTATTCAGTTAGGAGAATGATTATGTACATACTGATGCTATGTACAATAGCGCCAATGATTGTTGCGTATTGGGCCTCTGTTAAAGCTTTGACACCTGGTGAAAAATTAATGTCTGAGATCACTGCTACCATATGGTCTATTTTGGGAGTCTATCTTATTGGCCTCCCATTTGTTCTACTTTACTACCTAGTCAAGAAATTTTTGTGA
Protein sequence
MSKTGAKNEEATVVSIDTENENRKDREEKNNGWMGPGDVDFVMVVVTFIAAVAFQVGTNPPGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLAFSLIQLSVMLFKWYLKSYSVRRMIMYILMLCTIAPMIVAYWASVKALTPGEKLMSEITATIWSILGVYLIGLPFVLLYYLVKKFL
Homology
BLAST of PI0023555 vs. ExPASy TrEMBL
Match:
A0A0A0KIL3 (PGG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G363520 PE=4 SV=1)
HSP 1 Score: 321.6 bits (823), Expect = 2.1e-84
Identity = 167/184 (90.76%), Postives = 174/184 (94.57%), Query Frame = 0
Query: 1 MSKTGAKNEEATVVSIDTENENRKDREEKNNGWMGPGDVDFVMVVVTFIAAVAFQVGTNP 60
MSK GAKNEEATVVSIDT +EN+KDREEKN+GWM PGDVDFVMVVVTFIAAVAFQVG NP
Sbjct: 1 MSKAGAKNEEATVVSIDTASENKKDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINP 60
Query: 61 PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLAFSLIQLSVMLFKWYLKSYSVR 120
PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCL FSLIQL VMLF+WYLKSYSVR
Sbjct: 61 PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVR 120
Query: 121 RMIMYILMLCTIAPMIVAYWASVKALTPGEKLMSEITATIWSILGVYLIGLPFVLLYYLV 180
RMIMYILMLCTIAPMIV++WASVKALTP EKLMSEITATIWSILGVYLI LP +LLYYLV
Sbjct: 121 RMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYLV 180
Query: 181 KKFL 185
K FL
Sbjct: 181 KTFL 184
BLAST of PI0023555 vs. ExPASy TrEMBL
Match:
A0A1S3BCY4 (uncharacterized protein LOC103488512 OS=Cucumis melo OX=3656 GN=LOC103488512 PE=4 SV=1)
HSP 1 Score: 313.5 bits (802), Expect = 5.7e-82
Identity = 159/184 (86.41%), Postives = 173/184 (94.02%), Query Frame = 0
Query: 1 MSKTGAKNEEATVVSIDTENENRKDREEKNNGWMGPGDVDFVMVVVTFIAAVAFQVGTNP 60
MSK GAKNEEATVV+IDTE ENRKD EE N+GWM PGDVDFVM+VVTFIAAVAFQVGTNP
Sbjct: 1 MSKAGAKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNP 60
Query: 61 PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLAFSLIQLSVMLFKWYLKSYSVR 120
PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCL+FSLIQLSVMLF+WYLK+YSVR
Sbjct: 61 PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLSFSLIQLSVMLFRWYLKTYSVR 120
Query: 121 RMIMYILMLCTIAPMIVAYWASVKALTPGEKLMSEITATIWSILGVYLIGLPFVLLYYLV 180
RMIMY+LM+CTIAPMI ++WASVKALTP EK+MSEITATIWS GVYL+ LP +LLYYL+
Sbjct: 121 RMIMYLLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYLL 180
Query: 181 KKFL 185
KKFL
Sbjct: 181 KKFL 184
BLAST of PI0023555 vs. ExPASy TrEMBL
Match:
A0A5A7VCJ4 (Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00270 PE=4 SV=1)
HSP 1 Score: 136.7 bits (343), Expect = 9.6e-29
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0
Query: 1 MSKTGAKNEEATVVSIDTENENRKDREEKNNGWMGPGDVDFVMVVVTFIAAVAFQVGTNP 60
MSK GAKNEEATVV+IDTE ENRKD EE N+GWM PGDVDFVM+VVTFIAAVAFQVGTNP
Sbjct: 1 MSKAGAKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNP 60
Query: 61 PGSVWQEDKNGFTA 75
PGSVWQEDKNGFTA
Sbjct: 61 PGSVWQEDKNGFTA 74
BLAST of PI0023555 vs. ExPASy TrEMBL
Match:
A0A1S4DVA8 (uncharacterized protein LOC107990705 OS=Cucumis melo OX=3656 GN=LOC107990705 PE=4 SV=1)
HSP 1 Score: 127.9 bits (320), Expect = 4.4e-26
Identity = 84/183 (45.90%), Postives = 120/183 (65.57%), Query Frame = 0
Query: 7 KNEEATVVSIDTE---NENRKDREEKNNGWMGPG-DVDFVMVVVTFIAAVAFQVGTNPPG 66
K E+ +V+SI+T+ NE K+ ++K G G D DF+MV TFIAA+AFQ GTNPPG
Sbjct: 4 KVEDESVLSIETDQTINEKDKENQKKKKKKEGEGRDRDFLMVATTFIAAMAFQAGTNPPG 63
Query: 67 SVWQEDKN-GFTAGKSIMASKSPSEYKKFMAGVTLCLAFSLIQLSVMLFKWYLKSYSVRR 126
VWQ+D + + AGKSIMA+KSPS + FM+GVT+C A S +Q V+L K KS+SV +
Sbjct: 64 GVWQDDNSPNYEAGKSIMATKSPSLFISFMSGVTVCFACSAMQFIVLLGKSSEKSWSVSK 123
Query: 127 MIMYILMLCTIAPMIVAYWASVKALTPGEKLMSEITATIWSILGVYLIGLPFVLLYYLVK 185
+Y M I+ ++VAYW+++KALTP E MS + + + L + ++ LP + Y+ K
Sbjct: 124 SFIYFTMGSGISAIVVAYWSAIKALTP-EAQMSHVIVMLKTTLVLSVVVLPISM--YIEK 183
BLAST of PI0023555 vs. ExPASy TrEMBL
Match:
A0A5A7VAU9 (Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold187G00280 PE=4 SV=1)
HSP 1 Score: 119.4 bits (298), Expect = 1.6e-23
Identity = 78/174 (44.83%), Postives = 111/174 (63.79%), Query Frame = 0
Query: 10 EATVVSID-TENENRKDREEKNNGWMGPGDVDFVMVVVTFIAAVAFQVGTNPPGSVWQE- 69
E+ ++ID TE + K++ NN W+ D DF+MVV TFIA VAFQ+GTNPPG VWQE
Sbjct: 9 ESVAITIDTTETGHEKNKMMNNNNWIRE-DTDFLMVVTTFIATVAFQIGTNPPGGVWQED 68
Query: 70 DKNG-FTAGKSIMASKSPSEYKKFMAGVTLCLAFSLIQLSVM-LFKWYL--KSYSVRRMI 129
DK G + AGKSIMA+KSPS++ ++ +T C FS +Q +V+ L KW + K++S R I
Sbjct: 69 DKQGKYFAGKSIMATKSPSDFSGYLVTITACFVFSAMQFAVLFLKKWPVGAKNWSFSRFI 128
Query: 130 MYILMLCTIAPMIVAYWASVKALTPGEKLMSEITATIWSILGVYLIGLPFVLLY 178
+Y M I+ M +AY SV+A TP + + + ++LG + IGL + LY
Sbjct: 129 LYSTMGLAISSMGIAYGCSVRAYTPDSEEKTRYVISFITMLG-FPIGLAAISLY 180
BLAST of PI0023555 vs. NCBI nr
Match:
XP_004144204.1 (uncharacterized protein LOC101208403 [Cucumis sativus])
HSP 1 Score: 321.6 bits (823), Expect = 4.3e-84
Identity = 167/184 (90.76%), Postives = 174/184 (94.57%), Query Frame = 0
Query: 1 MSKTGAKNEEATVVSIDTENENRKDREEKNNGWMGPGDVDFVMVVVTFIAAVAFQVGTNP 60
MSK GAKNEEATVVSIDT +EN+KDREEKN+GWM PGDVDFVMVVVTFIAAVAFQVG NP
Sbjct: 1 MSKAGAKNEEATVVSIDTASENKKDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINP 60
Query: 61 PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLAFSLIQLSVMLFKWYLKSYSVR 120
PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCL FSLIQL VMLF+WYLKSYSVR
Sbjct: 61 PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVR 120
Query: 121 RMIMYILMLCTIAPMIVAYWASVKALTPGEKLMSEITATIWSILGVYLIGLPFVLLYYLV 180
RMIMYILMLCTIAPMIV++WASVKALTP EKLMSEITATIWSILGVYLI LP +LLYYLV
Sbjct: 121 RMIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYLV 180
Query: 181 KKFL 185
K FL
Sbjct: 181 KTFL 184
BLAST of PI0023555 vs. NCBI nr
Match:
KAE8647228.1 (hypothetical protein Csa_018955 [Cucumis sativus])
HSP 1 Score: 320.1 bits (819), Expect = 1.3e-83
Identity = 166/183 (90.71%), Postives = 174/183 (95.08%), Query Frame = 0
Query: 2 SKTGAKNEEATVVSIDTENENRKDREEKNNGWMGPGDVDFVMVVVTFIAAVAFQVGTNPP 61
SK+GAKNEEATVVSIDT +EN+KDREEKN+GWM PGDVDFVMVVVTFIAAVAFQVG NPP
Sbjct: 188 SKSGAKNEEATVVSIDTASENKKDREEKNSGWMKPGDVDFVMVVVTFIAAVAFQVGINPP 247
Query: 62 GSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLAFSLIQLSVMLFKWYLKSYSVRR 121
GSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCL FSLIQL VMLF+WYLKSYSVRR
Sbjct: 248 GSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLGFSLIQLCVMLFRWYLKSYSVRR 307
Query: 122 MIMYILMLCTIAPMIVAYWASVKALTPGEKLMSEITATIWSILGVYLIGLPFVLLYYLVK 181
MIMYILMLCTIAPMIV++WASVKALTP EKLMSEITATIWSILGVYLI LP +LLYYLVK
Sbjct: 308 MIMYILMLCTIAPMIVSFWASVKALTPDEKLMSEITATIWSILGVYLISLPIILLYYLVK 367
Query: 182 KFL 185
FL
Sbjct: 368 TFL 370
BLAST of PI0023555 vs. NCBI nr
Match:
XP_008445521.1 (PREDICTED: uncharacterized protein LOC103488512 [Cucumis melo])
HSP 1 Score: 313.5 bits (802), Expect = 1.2e-81
Identity = 159/184 (86.41%), Postives = 173/184 (94.02%), Query Frame = 0
Query: 1 MSKTGAKNEEATVVSIDTENENRKDREEKNNGWMGPGDVDFVMVVVTFIAAVAFQVGTNP 60
MSK GAKNEEATVV+IDTE ENRKD EE N+GWM PGDVDFVM+VVTFIAAVAFQVGTNP
Sbjct: 1 MSKAGAKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNP 60
Query: 61 PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLAFSLIQLSVMLFKWYLKSYSVR 120
PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCL+FSLIQLSVMLF+WYLK+YSVR
Sbjct: 61 PGSVWQEDKNGFTAGKSIMASKSPSEYKKFMAGVTLCLSFSLIQLSVMLFRWYLKTYSVR 120
Query: 121 RMIMYILMLCTIAPMIVAYWASVKALTPGEKLMSEITATIWSILGVYLIGLPFVLLYYLV 180
RMIMY+LM+CTIAPMI ++WASVKALTP EK+MSEITATIWS GVYL+ LP +LLYYL+
Sbjct: 121 RMIMYLLMICTIAPMIFSFWASVKALTPDEKIMSEITATIWSSFGVYLMSLPLILLYYLL 180
Query: 181 KKFL 185
KKFL
Sbjct: 181 KKFL 184
BLAST of PI0023555 vs. NCBI nr
Match:
XP_038884181.1 (uncharacterized protein LOC120075089 [Benincasa hispida])
HSP 1 Score: 236.9 bits (603), Expect = 1.4e-58
Identity = 133/189 (70.37%), Postives = 154/189 (81.48%), Query Frame = 0
Query: 1 MSKTGA-KNEEATVVSIDTENENRKDREEKNNGWMGPGDVDFVMVVVTFIAAVAFQVGTN 60
M+K GA K+EEAT VSIDTE E+RKDREE N GW+ DVDFVMV+VTFIA VAFQ GTN
Sbjct: 1 MAKAGAKKDEEATAVSIDTERESRKDREEANQGWI-ERDVDFVMVIVTFIATVAFQAGTN 60
Query: 61 PPGSVWQEDK--NG--FTAGKSIMASKSPSEYKKFMAGVTLCLAFSLIQLSVMLFKWYLK 120
PPG VWQEDK NG + AGKSIM +KSPSEY KFM GVT+CLAFS+IQL VMLF WYLK
Sbjct: 61 PPGGVWQEDKKVNGTDYIAGKSIMGTKSPSEYIKFMVGVTVCLAFSVIQLIVMLFNWYLK 120
Query: 121 SYSVRRMIMYILMLCTIAPMIVAYWASVKALTPGEKLMSEITATIWSILGVYLIGLPFVL 180
S+S+RR I+Y+LML TI PM+VA+W+S+ ALTP + LM+EI A WS++GV LI LPFVL
Sbjct: 121 SWSIRRAILYMLMLLTITPMVVAFWSSLLALTPAD-LMTEIKAGFWSVIGVSLIVLPFVL 180
Query: 181 LYYLVKKFL 185
LYYL KK L
Sbjct: 181 LYYLTKKCL 187
BLAST of PI0023555 vs. NCBI nr
Match:
KAA0064717.1 (ankyrin repeat-containing protein [Cucumis melo var. makuwa] >TYK00737.1 ankyrin repeat-containing protein [Cucumis melo var. makuwa])
HSP 1 Score: 136.7 bits (343), Expect = 2.0e-28
Identity = 66/74 (89.19%), Postives = 69/74 (93.24%), Query Frame = 0
Query: 1 MSKTGAKNEEATVVSIDTENENRKDREEKNNGWMGPGDVDFVMVVVTFIAAVAFQVGTNP 60
MSK GAKNEEATVV+IDTE ENRKD EE N+GWM PGDVDFVM+VVTFIAAVAFQVGTNP
Sbjct: 1 MSKAGAKNEEATVVAIDTETENRKDGEEMNSGWMRPGDVDFVMIVVTFIAAVAFQVGTNP 60
Query: 61 PGSVWQEDKNGFTA 75
PGSVWQEDKNGFTA
Sbjct: 61 PGSVWQEDKNGFTA 74
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0KIL3 | 2.1e-84 | 90.76 | PGG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G363520 PE=4 SV... | [more] |
A0A1S3BCY4 | 5.7e-82 | 86.41 | uncharacterized protein LOC103488512 OS=Cucumis melo OX=3656 GN=LOC103488512 PE=... | [more] |
A0A5A7VCJ4 | 9.6e-29 | 89.19 | Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
A0A1S4DVA8 | 4.4e-26 | 45.90 | uncharacterized protein LOC107990705 OS=Cucumis melo OX=3656 GN=LOC107990705 PE=... | [more] |
A0A5A7VAU9 | 1.6e-23 | 44.83 | Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... | [more] |
Match Name | E-value | Identity | Description | |
XP_004144204.1 | 4.3e-84 | 90.76 | uncharacterized protein LOC101208403 [Cucumis sativus] | [more] |
KAE8647228.1 | 1.3e-83 | 90.71 | hypothetical protein Csa_018955 [Cucumis sativus] | [more] |
XP_008445521.1 | 1.2e-81 | 86.41 | PREDICTED: uncharacterized protein LOC103488512 [Cucumis melo] | [more] |
XP_038884181.1 | 1.4e-58 | 70.37 | uncharacterized protein LOC120075089 [Benincasa hispida] | [more] |
KAA0064717.1 | 2.0e-28 | 89.19 | ankyrin repeat-containing protein [Cucumis melo var. makuwa] >TYK00737.1 ankyrin... | [more] |
Match Name | E-value | Identity | Description | |