PI0023554 (gene) Melon (PI 482460) v1

Overview


Name	PI0023554
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	NAD(P)H dehydrogenase subunit 5
Location	tig00000638: 28682 .. 29615 (-)
RNA-Seq Expression	PI0023554
Synteny	PI0023554

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATTCTGGCTTTCGTGCTTTGGTGGGTCTCCGAGATCCTTTCGATGACCTATGTTGTGTTGAAGGGATATCTATATGATCCGATTGATTGCGTAAAGCCCGCGGTAGCAACGGAACCGGGGAAAGTATACAGAAAAGACAGTTCTTTTCTATTCTATTAGTATTAGATTAGTATTAGTTAGTGATCTCGGCTCAGTGAGTCCTTTCTTCCGTGATGAACTGTTGGCACCAGTCCTCCATTTTGTCTCTGTGGATCGAGGAGAAAGGGGGCTCGGCGGGAAGAGGATTGTAACATGAGAGAAGCAAGGAGGTCAACCTCTTTCAAATATACAACATGGATTCTGGCAATGCAATGTAGTTGGACTCTCATGTCGATCCGAATGAATCATCCTTTCCACGGAGGTAAATCTTTGCCTGCTAGGCAAGAGGATAGCAAGTTACAAATTCTGTCGCGGTAGGACATGTATTTCTATTACTATGAAATTCATAAATGAAGTAGTTAATGGTGGGGTTACCATTATCCTTTTTGCAATGACGAATCTTGTATGTGTTCCGAAGAAAAGTTGTTCATTTTTCGGGGTCTCGAAGGGGCGTGGAAACACATAAAAACTCTGGAATGGAAATGGAAAAGAGATGTAACTCCAGTTCCTTCGGAAATGGTAAGATCTTTGGCACAAGAAGAAGGGGTTGATCCATATCATCTTGACTGGGTTCTGATTTCTCTATTTTTTTAATAATACCGAGTTGGGTTCTTTTCCTACCCGTATCGAATAGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCGGGAAAATCGTACGGTTTTATGAAACCGTGTGCTATGGCTCGAATCCGTAGTCAATCCTATTTACGATAG

mRNA sequence

ATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATTCTGGCTTTCGTGCTTTGGGATATCTATATGATCCGATTGATTGCGTAAAGCCCGCGGTAGCAACGGAACCGGGGAAATCCTCCATTTTGTCTCTGTGGATCGAGGAGAAAGGGGGCTCGGCGGGAAGAGGATTTTGGACTCTCATGTCGATCCGAATGAATCATCCTTTCCACGGAGGTAAATCTTTGCCTGCTAGGCAAGAGGATAGCAAGTTACAAATTCTGTCGCGAAAAGTTGTTCATTTTTCGGGGTCTCGAAGGGGCGTGGAAACACATAAAAACTCTGGAATGGAAATGGAAAAGAGATGTAACTCCAGTTCCTTCGGAAATGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCGGGAAAATCGTACGGTTTTATGAAACCGTGTGCTATGGCTCGAATCCGTAGTCAATCCTATTTACGATAG

Coding sequence (CDS)

ATGCGGTTATGCACTCTTCGAATAGGAATCCATTTTCTGAAAGATTCTGGCTTTCGTGCTTTGGGATATCTATATGATCCGATTGATTGCGTAAAGCCCGCGGTAGCAACGGAACCGGGGAAATCCTCCATTTTGTCTCTGTGGATCGAGGAGAAAGGGGGCTCGGCGGGAAGAGGATTTTGGACTCTCATGTCGATCCGAATGAATCATCCTTTCCACGGAGGTAAATCTTTGCCTGCTAGGCAAGAGGATAGCAAGTTACAAATTCTGTCGCGAAAAGTTGTTCATTTTTCGGGGTCTCGAAGGGGCGTGGAAACACATAAAAACTCTGGAATGGAAATGGAAAAGAGATGTAACTCCAGTTCCTTCGGAAATGAACATGCTGAGCCAAATCTTCTTCATGTAAAACCTGCTTTATTTAGATCGGGAAAATCGTACGGTTTTATGAAACCGTGTGCTATGGCTCGAATCCGTAGTCAATCCTATTTACGATAG

Protein sequence

MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGKSSILSLWIEEKGGSAGRGFWTLMSIRMNHPFHGGKSLPARQEDSKLQILSRKVVHFSGSRRGVETHKNSGMEMEKRCNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYLR

Homology

[Close]

BLAST of PI0023554 vs. ExPASy TrEMBL
Match: A0A0A0L231 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G628320 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.1e-87
Identity = 159/160 (99.38%), Postives = 159/160 (99.38%), Query Frame = 0


Query: 1   MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGKSSILSLWIEEKGGSAGRGF 60
           MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGKSSI SLWIEEKGGSAGRGF
Sbjct: 1   MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGKSSIFSLWIEEKGGSAGRGF 60

Query: 61  WTLMSIRMNHPFHGGKSLPARQEDSKLQILSRKVVHFSGSRRGVETHKNSGMEMEKRCNS 120
           WTLMSIRMNHPFHGGKSLPARQEDSKLQILSRKVVHFSGSRRGVETHKNSGMEMEKRCNS
Sbjct: 61  WTLMSIRMNHPFHGGKSLPARQEDSKLQILSRKVVHFSGSRRGVETHKNSGMEMEKRCNS 120

Query: 121 SSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQ 161
           SSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQ
Sbjct: 121 SSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQ 160

[Close]

BLAST of PI0023554 vs. ExPASy TrEMBL
Match: A0A2P5XUU9 (Uncharacterized protein ycf68 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA13525 PE=3 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 9.2e-15
Identity = 55/122 (45.08%), Postives = 62/122 (50.82%), Query Frame = 0


Query: 1   MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGKSSI---------------- 60
           M LCTLRIGIHFLKD GFRALGYLYDPI CVK A+ TEPGKS I                
Sbjct: 1   MWLCTLRIGIHFLKDPGFRALGYLYDPIGCVKLAITTEPGKSYIPFCLCGPRRKAAQQEG 60

Query: 61  --------------LSLWIEEKGGSAGRGFWTLMSIRMNHPFHGGKSLPARQEDSKLQIL 93
                          + W+ E   S     W  M IRMNH FHG  +L    +  K +IL
Sbjct: 61  DCTMREARRSTSFKYTTWVLEMQRS-----WAFMRIRMNHLFHGVTNLVCVPKKRK-EIL 116

[Close]

BLAST of PI0023554 vs. ExPASy TrEMBL
Match: A0A5N5IXQ9 (Uncharacterized protein ycf68 OS=Salix brachista OX=2182728 GN=DKX38_030151 PE=3 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.5e-12
Identity = 58/134 (43.28%), Postives = 73/134 (54.48%), Query Frame = 0


Query: 41  KSSILSLWIEEKGGS--------AGRGFWTLMSIRMNHPFHGGKSLPARQEDSKLQILSR 100
           +S ILSLW EEK  S        A +  WTLMSIRMNHPFHGGKSLPARQEDSKLQILSR
Sbjct: 6   QSYILSLWTEEKSASFKYTTWILAIQWSWTLMSIRMNHPFHGGKSLPARQEDSKLQILSR 65

Query: 101 KVVHFSGSRRGVETHKNSGMEMEKRC---NSSSFGNEHAEPNLLHVKPALFRSGKSYGFM 160
             ++  G    + T K+ G    K C    +++ G  H   +    +  +FR+G+     
Sbjct: 66  --MNAGGM---LNTCKSDG----KWCFQWRTATLGLRHGPDSYGRQQWGIFRNGRKLDGA 125

Query: 161 KPCAMARIRSQSYL 164
            P   A I+    L
Sbjct: 126 MPRGAAVIQRMQAL 130

[Close]

BLAST of PI0023554 vs. ExPASy TrEMBL
Match: W9R592 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000755 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.1e-11
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 115 EKRCNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYLR 165
           +K  + +S      EPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSY R
Sbjct: 104 KKASHQASNATSKPEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYFR 153

[Close]

BLAST of PI0023554 vs. ExPASy TrEMBL
Match: A0A103XYX3 (NAD(P)H dehydrogenase subunit 5 OS=Cynara cardunculus var. scolymus OX=59895 GN=Ccrd_022308 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.7e-08
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 22  GYLYDPIDCVKPAVATEPGKSSILSLWIEEKGGSAGRGFW 62
           GYLY+PIDCVKPAVA E GKS ILSLW EEKGG A RG +
Sbjct: 68  GYLYNPIDCVKPAVAAEAGKSYILSLWTEEKGGMAERGLY 107

[Close]

BLAST of PI0023554 vs. NCBI nr
Match: PPS07120.1 (hypothetical protein GOBAR_AA13525 [Gossypium barbadense])

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-14
Identity = 55/122 (45.08%), Postives = 62/122 (50.82%), Query Frame = 0


Query: 1   MRLCTLRIGIHFLKDSGFRALGYLYDPIDCVKPAVATEPGKSSI---------------- 60
           M LCTLRIGIHFLKD GFRALGYLYDPI CVK A+ TEPGKS I                
Sbjct: 1   MWLCTLRIGIHFLKDPGFRALGYLYDPIGCVKLAITTEPGKSYIPFCLCGPRRKAAQQEG 60

Query: 61  --------------LSLWIEEKGGSAGRGFWTLMSIRMNHPFHGGKSLPARQEDSKLQIL 93
                          + W+ E   S     W  M IRMNH FHG  +L    +  K +IL
Sbjct: 61  DCTMREARRSTSFKYTTWVLEMQRS-----WAFMRIRMNHLFHGVTNLVCVPKKRK-EIL 116

[Close]

BLAST of PI0023554 vs. NCBI nr
Match: KAB5511226.1 (hypothetical protein DKX38_030151 [Salix brachista])

HSP 1 Score: 82.0 bits (201), Expect = 5.2e-12
Identity = 58/134 (43.28%), Postives = 73/134 (54.48%), Query Frame = 0


Query: 41  KSSILSLWIEEKGGS--------AGRGFWTLMSIRMNHPFHGGKSLPARQEDSKLQILSR 100
           +S ILSLW EEK  S        A +  WTLMSIRMNHPFHGGKSLPARQEDSKLQILSR
Sbjct: 6   QSYILSLWTEEKSASFKYTTWILAIQWSWTLMSIRMNHPFHGGKSLPARQEDSKLQILSR 65

Query: 101 KVVHFSGSRRGVETHKNSGMEMEKRC---NSSSFGNEHAEPNLLHVKPALFRSGKSYGFM 160
             ++  G    + T K+ G    K C    +++ G  H   +    +  +FR+G+     
Sbjct: 66  --MNAGGM---LNTCKSDG----KWCFQWRTATLGLRHGPDSYGRQQWGIFRNGRKLDGA 125

Query: 161 KPCAMARIRSQSYL 164
            P   A I+    L
Sbjct: 126 MPRGAAVIQRMQAL 130

[Close]

BLAST of PI0023554 vs. NCBI nr
Match: EXB56973.1 (hypothetical protein L484_000755 [Morus notabilis])

HSP 1 Score: 77.4 bits (189), Expect = 1.3e-10
Identity = 37/50 (74.00%), Postives = 40/50 (80.00%), Query Frame = 0


Query: 115 EKRCNSSSFGNEHAEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYLR 165
           +K  + +S      EPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSY R
Sbjct: 104 KKASHQASNATSKPEPNLLHVKPALFRSGKSYGFMKPCAMARIRSQSYFR 153

[Close]

BLAST of PI0023554 vs. NCBI nr
Match: KVH99458.1 (NADH:ubiquinone/plastoquinone oxidoreductase, chloroplast chain 5, C-terminal [Cynara cardunculus var. scolymus])

HSP 1 Score: 68.2 bits (165), Expect = 7.7e-08
Identity = 31/40 (77.50%), Postives = 33/40 (82.50%), Query Frame = 0


Query: 22  GYLYDPIDCVKPAVATEPGKSSILSLWIEEKGGSAGRGFW 62
           GYLY+PIDCVKPAVA E GKS ILSLW EEKGG A RG +
Sbjct: 68  GYLYNPIDCVKPAVAAEAGKSYILSLWTEEKGGMAERGLY 107

[Close]

BLAST of PI0023554 vs. NCBI nr
Match: KAF3583690.1 (hypothetical protein F2Q69_00032187 [Brassica cretica])

HSP 1 Score: 65.9 bits (159), Expect = 3.8e-07
Identity = 40/72 (55.56%), Postives = 41/72 (56.94%), Query Frame = 0


Query: 1  MRLCTLRIGIHFLKDSGFRAL----------------GYLYDPIDCVKPAVATEPGK-SS 56
          M LCTLRIGIHFLKD GFRA                 GYL D IDCVKPAVATE GK   
Sbjct: 1  MWLCTLRIGIHFLKDPGFRAFAGLRDPFDDLCCVVLKGYLDDLIDCVKPAVATELGKDDE 60

The following BLAST results are available for this feature:

BLAST of PI0023554 vs.


Match Name	E-value	Identity	Description

BLAST of PI0023554 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L231	1.1e-87	99.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G628320 PE=4 SV=1	[more]
A0A2P5XUU9	9.2e-15	45.08	Uncharacterized protein ycf68 OS=Gossypium barbadense OX=3634 GN=GOBAR_AA13525 P...	[more]
A0A5N5IXQ9	2.5e-12	43.28	Uncharacterized protein ycf68 OS=Salix brachista OX=2182728 GN=DKX38_030151 PE=3...	[more]
W9R592	6.1e-11	74.00	Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_000755 PE=4 SV=1	[more]
A0A103XYX3	3.7e-08	77.50	NAD(P)H dehydrogenase subunit 5 OS=Cynara cardunculus var. scolymus OX=59895 GN=...	[more]

BLAST of PI0023554 vs. NCBI nr


Match Name	E-value	Identity	Description
PPS07120.1	1.9e-14	45.08	hypothetical protein GOBAR_AA13525 [Gossypium barbadense]	[more]
KAB5511226.1	5.2e-12	43.28	hypothetical protein DKX38_030151 [Salix brachista]	[more]
EXB56973.1	1.3e-10	74.00	hypothetical protein L484_000755 [Morus notabilis]	[more]
KVH99458.1	7.7e-08	77.50	NADH:ubiquinone/plastoquinone oxidoreductase, chloroplast chain 5, C-terminal [C...	[more]
KAF3583690.1	3.8e-07	55.56	hypothetical protein F2Q69_00032187 [Brassica cretica]	[more]

BLAST of PI0023554 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023554.1	PI0023554.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0048038	quinone binding