PI0023534 (gene) Melon (PI 482460) v1

Overview


Name	PI0023534
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	(6-4)DNA photolyase
Location	chr01: 27285793 .. 27286458 (-)
RNA-Seq Expression	PI0023534
Synteny	PI0023534

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTACATTTTTGCTTCTCTCACATGGCCACCAATTTAGCCGTTTTTCATCCCGCTCCGATCAGAGCTTCTTCTTCTTCTTCAGGAAAATCAGAACCTAATCGCCGGAAGCCCGCCGCGCCGAAGTGGTGGTCGCCGATCTTCGGCTGGTCATCCGAACCGGACTACGTTGTTTCTTCCGTCGCGGAACAATCCATTCAGAATGCCCATCTGGAGCTCGACGGTGGAAGAACCAGATCCAGATTTGCACCTGGATGCTTCACGGAGGAGAAGGCGAAACTACTCCGAATGAAAACGCTGGAAAGCTCTACTTTCCATGATATTATGTACCATTCGGCGATCGCATCGCGTCTCGCTTCCGATTTGTCGGACCGAAGCAAGAAATAGATAGATCTACGAAGATTTGGCGCAGTGAGGTATTGTATTGTGTTTTTGGAAATCTGTATCTGTACTGCCTTTTTTCTGTAAATCTTCATAAAAATTTGGGGAAGGAAGTAAATCTTCATTTCCTGATAAATTTACATCTTCATTTTGCCTTTTAGACCGTTTAGATTAAGGAAACTTCATACCTACTGCAACTATTTTCCATCTGATTATTGATTGACGACGATTGATTTGAATTTGTTTTCTCATTATCATCGGTCTGATTTGCATCTTGATGTCGACGGC

mRNA sequence

CTACATTTTTGCTTCTCTCACATGGCCACCAATTTAGCCGTTTTTCATCCCGCTCCGATCAGAGCTTCTTCTTCTTCTTCAGGAAAATCAGAACCTAATCGCCGGAAGCCCGCCGCGCCGAAGTGGTGGTCGCCGATCTTCGGCTGGTCATCCGAACCGGACTACGTTGTTTCTTCCGTCGCGGAACAATCCATTCAGAATGCCCATCTGGAGCTCGACGGTGGAAGAACCAGATCCAGATTTGCACCTGGATGCTTCACGGAGGAGAAGGCGAAACTACTCCGAATGAAAACGCTGGAAAGCTCTACTTTCCATGATATTATGTACCATTCGGCGATCGCATCGCGTCTCGCTTCCGATTTGTCGGACCGAAGCAAGAAATAGATAGATCTACGAAGATTTGGCGCAGTGAGGTATTGTATTGTGTTTTTGGAAATCTGTATCTGTACTGCCTTTTTTCTGTAAATCTTCATAAAAATTTGGGGAAGGAAGTAAATCTTCATTTCCTGATAAATTTACATCTTCATTTTGCCTTTTAGACCGTTTAGATTAAGGAAACTTCATACCTACTGCAACTATTTTCCATCTGATTATTGATTGACGACGATTGATTTGAATTTGTTTTCTCATTATCATCGGTCTGATTTGCATCTTGATGTCGACGGC

Coding sequence (CDS)

ATGGCCACCAATTTAGCCGTTTTTCATCCCGCTCCGATCAGAGCTTCTTCTTCTTCTTCAGGAAAATCAGAACCTAATCGCCGGAAGCCCGCCGCGCCGAAGTGGTGGTCGCCGATCTTCGGCTGGTCATCCGAACCGGACTACGTTGTTTCTTCCGTCGCGGAACAATCCATTCAGAATGCCCATCTGGAGCTCGACGGTGGAAGAACCAGATCCAGATTTGCACCTGGATGCTTCACGGAGGAGAAGGCGAAACTACTCCGAATGAAAACGCTGGAAAGCTCTACTTTCCATGATATTATGTACCATTCGGCGATCGCATCGCGTCTCGCTTCCGATTTGTCGGACCGAAGCAAGAAATAG

Protein sequence

MATNLAVFHPAPIRASSSSSGKSEPNRRKPAAPKWWSPIFGWSSEPDYVVSSVAEQSIQNAHLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK

Homology

[Close]

BLAST of PI0023534 vs. ExPASy TrEMBL
Match: A0A5D3CF29 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold459G002310 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.4e-51
Identity = 109/122 (89.34%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MATNLAVFHPAPIRASSS-SSGKSEPNRRKPAAPKWWSPIFGWSSEPDYVVSSVAE-QSI 60
           MATN AVFHP PIRASSS SSGKS+PNRR  A PKWWSPIFGWSSEPDYVVSS AE QS+
Sbjct: 1   MATNFAVFHPPPIRASSSASSGKSQPNRRNAAGPKWWSPIFGWSSEPDYVVSSAAEVQSV 60

Query: 61  QNAHLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 120
           QNA  ELDGGRT SRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  QNADPELDGGRTGSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 120

[Close]

BLAST of PI0023534 vs. ExPASy TrEMBL
Match: A0A1S3CEC0 (uncharacterized protein LOC103499770 OS=Cucumis melo OX=3656 GN=LOC103499770 PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 3.4e-51
Identity = 109/122 (89.34%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MATNLAVFHPAPIRASSS-SSGKSEPNRRKPAAPKWWSPIFGWSSEPDYVVSSVAE-QSI 60
           MATN AVFHP PIRASSS SSGKS+PNRR  A PKWWSPIFGWSSEPDYVVSS AE QS+
Sbjct: 1   MATNFAVFHPPPIRASSSASSGKSQPNRRNAAGPKWWSPIFGWSSEPDYVVSSAAEVQSV 60

Query: 61  QNAHLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 120
           QNA  ELDGGRT SRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  QNADPELDGGRTGSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 120

[Close]

BLAST of PI0023534 vs. ExPASy TrEMBL
Match: A0A6J1KTB2 (uncharacterized protein LOC111498038 OS=Cucurbita maxima OX=3661 GN=LOC111498038 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.2e-49
Identity = 102/120 (85.00%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MATNLAVFHPAPIRASSSSSGKSEPNRRKPAAPKWWSPIFGWSSEPDYVVSSVAEQSIQN 60
           MATNL VFH APIRA  SSSGKSEPNRRK AAPKWWSPIFGWSSEPDY+ SS A+Q +QN
Sbjct: 1   MATNLPVFHVAPIRA--SSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQN 60

Query: 61  AHLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 120
           A  ELDGGR +S+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSK+
Sbjct: 61  ADPELDGGRAKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

[Close]

BLAST of PI0023534 vs. ExPASy TrEMBL
Match: A0A6J1H6P9 (uncharacterized protein LOC111460952 OS=Cucurbita moschata OX=3662 GN=LOC111460952 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 4.2e-49
Identity = 102/120 (85.00%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MATNLAVFHPAPIRASSSSSGKSEPNRRKPAAPKWWSPIFGWSSEPDYVVSSVAEQSIQN 60
           MATNL VFH APIRA  SSSGKSEPNRRK AAPKWWSPIFGWSSEPDY+ SS A+Q +QN
Sbjct: 1   MATNLPVFHAAPIRA--SSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQN 60

Query: 61  AHLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 120
           A  ELDGGR +S+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSK+
Sbjct: 61  ADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

[Close]

BLAST of PI0023534 vs. ExPASy TrEMBL
Match: A0A0A0K8X0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433380 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.7e-48
Identity = 107/126 (84.92%), Postives = 108/126 (85.71%), Query Frame = 0


Query: 1   MATNLAVFHPAPIRA-----SSSSSGKSEPNRRKPAAPKWWSPIFGWSSEPDYVVSSVAE 60
           MATN AVFHPAPI A     SSSSSGK +PNR   AAPKWWSPIFGWSSEPDYVVSS AE
Sbjct: 1   MATNFAVFHPAPITASSSSSSSSSSGKYQPNRPNAAAPKWWSPIFGWSSEPDYVVSSAAE 60

Query: 61  -QSIQNAHLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDL 120
            QSIQNA  EL GGR RSRFAPGCFTEEKAKLLRMKT ESSTFHDIMYHSAIASRLASDL
Sbjct: 61  VQSIQNADPELHGGRIRSRFAPGCFTEEKAKLLRMKTRESSTFHDIMYHSAIASRLASDL 120

[Close]

BLAST of PI0023534 vs. NCBI nr
Match: XP_038898524.1 (uncharacterized protein LOC120086132 [Benincasa hispida])

HSP 1 Score: 216.5 bits (550), Expect = 1.3e-52
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MATNLAVFHPAPIRASSSSSGKSEPNRRKPAAPKWWSPIFGWSSEPDYVVSSVAEQSIQN 60
           MATNLAVFHPAPIRA  SSSGKSEPNRRK  APKWWSPIFGWSSEPDYV+SS AEQS+ N
Sbjct: 1   MATNLAVFHPAPIRA--SSSGKSEPNRRKATAPKWWSPIFGWSSEPDYVLSSAAEQSVLN 60

Query: 61  AHLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 120
           A  EL+GGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK
Sbjct: 61  AEPELEGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 118

[Close]

BLAST of PI0023534 vs. NCBI nr
Match: XP_008461069.1 (PREDICTED: uncharacterized protein LOC103499770 [Cucumis melo] >KAA0058783.1 uncharacterized protein E6C27_scaffold339G002570 [Cucumis melo var. makuwa] >TYK10577.1 uncharacterized protein E5676_scaffold459G002310 [Cucumis melo var. makuwa])

HSP 1 Score: 210.7 bits (535), Expect = 7.0e-51
Identity = 109/122 (89.34%), Postives = 111/122 (90.98%), Query Frame = 0


Query: 1   MATNLAVFHPAPIRASSS-SSGKSEPNRRKPAAPKWWSPIFGWSSEPDYVVSSVAE-QSI 60
           MATN AVFHP PIRASSS SSGKS+PNRR  A PKWWSPIFGWSSEPDYVVSS AE QS+
Sbjct: 1   MATNFAVFHPPPIRASSSASSGKSQPNRRNAAGPKWWSPIFGWSSEPDYVVSSAAEVQSV 60

Query: 61  QNAHLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 120
           QNA  ELDGGRT SRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS
Sbjct: 61  QNADPELDGGRTGSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRS 120

[Close]

BLAST of PI0023534 vs. NCBI nr
Match: XP_023004861.1 (uncharacterized protein LOC111498038 [Cucurbita maxima])

HSP 1 Score: 203.8 bits (517), Expect = 8.6e-49
Identity = 102/120 (85.00%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MATNLAVFHPAPIRASSSSSGKSEPNRRKPAAPKWWSPIFGWSSEPDYVVSSVAEQSIQN 60
           MATNL VFH APIRA  SSSGKSEPNRRK AAPKWWSPIFGWSSEPDY+ SS A+Q +QN
Sbjct: 1   MATNLPVFHVAPIRA--SSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQN 60

Query: 61  AHLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 120
           A  ELDGGR +S+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSK+
Sbjct: 61  ADPELDGGRAKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

[Close]

BLAST of PI0023534 vs. NCBI nr
Match: XP_022960101.1 (uncharacterized protein LOC111460952 [Cucurbita moschata] >KAG6593414.1 hypothetical protein SDJN03_12890, partial [Cucurbita argyrosperma subsp. sororia] >KAG7025762.1 hypothetical protein SDJN02_12260, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 203.8 bits (517), Expect = 8.6e-49
Identity = 102/120 (85.00%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MATNLAVFHPAPIRASSSSSGKSEPNRRKPAAPKWWSPIFGWSSEPDYVVSSVAEQSIQN 60
           MATNL VFH APIRA  SSSGKSEPNRRK AAPKWWSPIFGWSSEPDY+ SS A+Q +QN
Sbjct: 1   MATNLPVFHAAPIRA--SSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQPVQN 60

Query: 61  AHLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 120
           A  ELDGGR +S+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSK+
Sbjct: 61  ADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

[Close]

BLAST of PI0023534 vs. NCBI nr
Match: XP_023514525.1 (uncharacterized protein LOC111778781 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 203.0 bits (515), Expect = 1.5e-48
Identity = 102/120 (85.00%), Postives = 108/120 (90.00%), Query Frame = 0


Query: 1   MATNLAVFHPAPIRASSSSSGKSEPNRRKPAAPKWWSPIFGWSSEPDYVVSSVAEQSIQN 60
           MATNL VFH APIRA  SSSGKSEPNRRK AAPKWWSPIFGWSSEPDY+ SS A+Q +QN
Sbjct: 1   MATNLPVFHVAPIRA--SSSGKSEPNRRKAAAPKWWSPIFGWSSEPDYIGSSAADQLVQN 60

Query: 61  AHLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKK 120
           A  ELDGGR +S+F PGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSK+
Sbjct: 61  ADPELDGGRPKSKFLPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDRSKE 118

[Close]

BLAST of PI0023534 vs. TAIR 10
Match: AT3G15630.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G52720.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 102.1 bits (253), Expect = 3.3e-22
Identity = 60/115 (52.17%), Postives = 76/115 (66.09%), Query Frame = 0


Query: 1   MATNLAVFHPAPIRASSSSSGKSEPNRRKP-AAPKWWSPIFGWSSEPDYVVSSVAEQSIQ 60
           MAT ++    + IRASS    +S+P R+KP ++  WW+P+FG SSEPDYV  +V      
Sbjct: 1   MATIISCSALSSIRASS----ESDPARKKPVSSVSWWAPLFGMSSEPDYVNKTV------ 60

Query: 61  NAHLELDGGRTRSRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDL 115
             +LE D  +   R    C TEEKAK LR KT E+STFHD+MYHSAIASRLASD+
Sbjct: 61  --NLESDLDKAEKRSLRCCLTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDV 103

[Close]

BLAST of PI0023534 vs. TAIR 10
Match: AT1G52720.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G15630.1); Has 61 Blast hits to 61 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 61; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 101.7 bits (252), Expect = 4.3e-22
Identity = 50/106 (47.17%), Postives = 70/106 (66.04%), Query Frame = 0


Query: 12  PIRASSSSSGKSEPNRRKPAAPKWWSPIFGWSSEPDYVVSSVAEQSIQNAHLELDGGRTR 71
           P   +SS SG   P++ +  +  WW+P+FG  S+PDY+    +  ++     ++ G  + 
Sbjct: 11  PTIRASSGSGSLNPDQNRKKSAAWWAPLFGLPSDPDYLNIESSCSTVNPDKTDISG--SG 70

Query: 72  SRFAPGCFTEEKAKLLRMKTLESSTFHDIMYHSAIASRLASDLSDR 118
            +F  GCFTEEKAK LR KT E+STFHD+MYHSAIASRLASD++ R
Sbjct: 71  QKFRRGCFTEEKAKQLRRKTAEASTFHDVMYHSAIASRLASDITGR 114

The following BLAST results are available for this feature:

BLAST of PI0023534 vs.


Match Name	E-value	Identity	Description

BLAST of PI0023534 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CF29	3.4e-51	89.34	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CEC0	3.4e-51	89.34	uncharacterized protein LOC103499770 OS=Cucumis melo OX=3656 GN=LOC103499770 PE=...	[more]
A0A6J1KTB2	4.2e-49	85.00	uncharacterized protein LOC111498038 OS=Cucurbita maxima OX=3661 GN=LOC111498038...	[more]
A0A6J1H6P9	4.2e-49	85.00	uncharacterized protein LOC111460952 OS=Cucurbita moschata OX=3662 GN=LOC1114609...	[more]
A0A0A0K8X0	2.7e-48	84.92	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G433380 PE=4 SV=1	[more]

BLAST of PI0023534 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898524.1	1.3e-52	90.83	uncharacterized protein LOC120086132 [Benincasa hispida]	[more]
XP_008461069.1	7.0e-51	89.34	PREDICTED: uncharacterized protein LOC103499770 [Cucumis melo] >KAA0058783.1 unc...	[more]
XP_023004861.1	8.6e-49	85.00	uncharacterized protein LOC111498038 [Cucurbita maxima]	[more]
XP_022960101.1	8.6e-49	85.00	uncharacterized protein LOC111460952 [Cucurbita moschata] >KAG6593414.1 hypothet...	[more]
XP_023514525.1	1.5e-48	85.00	uncharacterized protein LOC111778781 [Cucurbita pepo subsp. pepo]	[more]

BLAST of PI0023534 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G15630.1	3.3e-22	52.17	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G52720.1	4.3e-22	47.17	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	PANTHER	PTHR34198	OS01G0175100 PROTEIN	coord: 1..120
None	No IPR available	PANTHER	PTHR34198:SF12	BNAA05G35680D PROTEIN	coord: 1..120

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023534.1	PI0023534.1	mRNA