PI0023508 (gene) Melon (PI 482460) v1

Overview


Name	PI0023508
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	RNA-binding (RRM/RBD/RNP motifs) family protein
Location	chr07: 23083754 .. 23085158 (+)
RNA-Seq Expression	PI0023508
Synteny	PI0023508

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGGCATTCGACATGGTACCTTGTGTTTTTGCTGAAAATCTCCTGTAATGTCAAAGCCGTAAAAAGTAAGTTCCCTACATTCTACACATACTTTTCCTTAATTTCTTTCTGTTCTTTTAAAGTGTAGTATCGTTTTCATTGAATCCCCTCTATAGGGTGTGTTTTGTCTGCATTTTGGGTTTTAGGTCTAATTCTTTAAATTGGATGAATTCTCTTATAGACATGGAATTTATTTATATCATTTACGCAGCTCCTTTTATTTTCTTCTGGTTTTATTCCTAATGTTTTGCTTCTTTATTGGTGATTGAAGCTTTGTCATCGAAACCCCATTTGATAAAGTGTTGCCTTTTAATCTTTATGTGTCTTGATGATTGATTTATAATGTTTGTTTTCGTCCAGAATTGAAGGTTGAAAAAAATAAAACTATACCTGATAAAATCTGTGGAGCCAACAAGTTTGAATATGAGTAATACTAGGATGGACAATAACAATGATCACTCTAGGGGAAGAAAGATTTTTGTTGGTGGCTTATCGGCTGAATTAACTGAGGACGAGTTCAAAAGTTACTTTGAAAAATTTGGTCAGATAACTGATATAGTTGTGATGCATGATAGTGTAACCAACCGTCGTAGAGGATTTGGATTCGTCACTTTTGAATCTTTAGAATCTGTTGACTCTGTTCTGCAAAAAAACTTTCATGAACTGAATGGGAGACGTGTGGAGGTGAAGAGAGCTATCCCAAAAAAGGGCAACTCCAATGGTGTTAATTCTCCCAATGCTAGAACACAGGGAGCAAAGAGTCCACTTCTTAACGGTAATAGGAATGTTCCTTTCCCTTACCCTTATTATGGTTCTGGTTATCCAATTTATCCTGGTTTTACACATTTTCCACATTACGGACCAGCGGTTGATTTGTATGGTTCTAACTTTTATGGGAATTGGTTTCCCCCTAGTTTTGGTAACATGGCTTCAGACGGCTCGTGGTATGGACCTGATTTTTTTGGTTTTGGGATGTTACCTCCACTTCGTAGAAATTTTTTAATGCAGTCAAGCAAGGGGATATTAGATACAGGGATGACTGATACTGGAAGAAACTATGAGATAAAGCCGAACACTACTGGAAAACGAAATATGTCTGCTGATGCAGTGCCATTTCAGATAAAAAACAGAAGTTCTTGAAGATATTGAAACTTAAATGTATTTGTTATTGGATTTGCATCTTACATAATGGCATTTGATTTGTAAATTCTGTTGCGGATAGATCTATGTCTCTCATTCTTGGAATTCTAATATTTGTGATATAATTGTTTTCATGATTCATCATTCTGCTACGAATTTGGGTTAACATTCGCCCTGTAAATGCTTGTAAATGAAATTTATTTAAGGGAGTCATAGTTTATATTGTT

mRNA sequence

CGGCATTCGACATGGTACCTTGTGTTTTTGCTGAAAATCTCCTGTAATGTCAAAGCCGTAAAAAAATTGAAGGTTGAAAAAAATAAAACTATACCTGATAAAATCTGTGGAGCCAACAAGTTTGAATATGAGTAATACTAGGATGGACAATAACAATGATCACTCTAGGGGAAGAAAGATTTTTGTTGGTGGCTTATCGGCTGAATTAACTGAGGACGAGTTCAAAAGTTACTTTGAAAAATTTGGTCAGATAACTGATATAGTTGTGATGCATGATAGTGTAACCAACCGTCGTAGAGGATTTGGATTCGTCACTTTTGAATCTTTAGAATCTGTTGACTCTGTTCTGCAAAAAAACTTTCATGAACTGAATGGGAGACGTGTGGAGGTGAAGAGAGCTATCCCAAAAAAGGGCAACTCCAATGGTGTTAATTCTCCCAATGCTAGAACACAGGGAGCAAAGAGTCCACTTCTTAACGGTAATAGGAATGTTCCTTTCCCTTACCCTTATTATGGTTCTGGTTATCCAATTTATCCTGGTTTTACACATTTTCCACATTACGGACCAGCGGTTGATTTGTATGGTTCTAACTTTTATGGGAATTGGTTTCCCCCTAGTTTTGGTAACATGGCTTCAGACGGCTCGTGGTATGGACCTGATTTTTTTGGTTTTGGGATGTTACCTCCACTTCGTAGAAATTTTTTAATGCAGTCAAGCAAGGGGATATTAGATACAGGGATGACTGATACTGGAAGAAACTATGAGATAAAGCCGAACACTACTGGAAAACGAAATATGTCTGCTGATGCAGTGCCATTTCAGATAAAAAACAGAAGTTCTTGAAGATATTGAAACTTAAATGTATTTGTTATTGGATTTGCATCTTACATAATGGCATTTGATTTGTAAATTCTGTTGCGGATAGATCTATGTCTCTCATTCTTGGAATTCTAATATTTGTGATATAATTGTTTTCATGATTCATCATTCTGCTACGAATTTGGGTTAACATTCGCCCTGTAAATGCTTGTAAATGAAATTTATTTAAGGGAGTCATAGTTTATATTGTT

Coding sequence (CDS)

ATGAGTAATACTAGGATGGACAATAACAATGATCACTCTAGGGGAAGAAAGATTTTTGTTGGTGGCTTATCGGCTGAATTAACTGAGGACGAGTTCAAAAGTTACTTTGAAAAATTTGGTCAGATAACTGATATAGTTGTGATGCATGATAGTGTAACCAACCGTCGTAGAGGATTTGGATTCGTCACTTTTGAATCTTTAGAATCTGTTGACTCTGTTCTGCAAAAAAACTTTCATGAACTGAATGGGAGACGTGTGGAGGTGAAGAGAGCTATCCCAAAAAAGGGCAACTCCAATGGTGTTAATTCTCCCAATGCTAGAACACAGGGAGCAAAGAGTCCACTTCTTAACGGTAATAGGAATGTTCCTTTCCCTTACCCTTATTATGGTTCTGGTTATCCAATTTATCCTGGTTTTACACATTTTCCACATTACGGACCAGCGGTTGATTTGTATGGTTCTAACTTTTATGGGAATTGGTTTCCCCCTAGTTTTGGTAACATGGCTTCAGACGGCTCGTGGTATGGACCTGATTTTTTTGGTTTTGGGATGTTACCTCCACTTCGTAGAAATTTTTTAATGCAGTCAAGCAAGGGGATATTAGATACAGGGATGACTGATACTGGAAGAAACTATGAGATAAAGCCGAACACTACTGGAAAACGAAATATGTCTGCTGATGCAGTGCCATTTCAGATAAAAAACAGAAGTTCTTGA

Protein sequence

MSNTRMDNNNDHSRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGFGFVTFESLESVDSVLQKNFHELNGRRVEVKRAIPKKGNSNGVNSPNARTQGAKSPLLNGNRNVPFPYPYYGSGYPIYPGFTHFPHYGPAVDLYGSNFYGNWFPPSFGNMASDGSWYGPDFFGFGMLPPLRRNFLMQSSKGILDTGMTDTGRNYEIKPNTTGKRNMSADAVPFQIKNRSS

Homology

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BLAST of PI0023508 vs. ExPASy Swiss-Prot
Match: Q9C652 (RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 9.8e-31
Identity = 75/133 (56.39%), Postives = 95/133 (71.43%), Query Frame = 0


Query: 6   MDNNNDHSRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGFGFVTFE 65
           M +N   SR +KIFVGGLS+  TE+EFKSYFE+FG+ TD+VVMHD VTNR RGFGFVT++
Sbjct: 110 MSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYD 169

Query: 66  SLESVDSVLQKNFHELNGRRVEVKRAIPKKG----NSNGVNSPNARTQGAKSPLL---NG 125
           S +SV+ V+Q NFHEL+ +RVEVKRAIPK+G    N N VN P + +    +P +   NG
Sbjct: 170 SEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSFQATPYVPEQNG 229

Query: 126 NRNV-PFPYPYYG 131
              V  FP P +G
Sbjct: 230 YGMVLQFPPPVFG 242

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BLAST of PI0023508 vs. ExPASy Swiss-Prot
Match: Q8W034 (Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP1 PE=1 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.1e-25
Identity = 72/182 (39.56%), Postives = 104/182 (57.14%), Query Frame = 0


Query: 1   MSNTRMDNNNDHSRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGFG 60
           ++ +R    + +++ +KIFVGGL   LT++EF+ YFE +G +TD+ +M+D  TNR RGFG
Sbjct: 95  LNTSRSSGGDAYNKTKKIFVGGLPPTLTDEEFRQYFEVYGPVTDVAIMYDQATNRPRGFG 154

Query: 61  FVTFESLESVDSVLQKNFHELNGRRVEVKRAIPKKGNSNGVNSPNARTQGAKSPLLNGNR 120
           FV+F+S ++VDSVL K FH+L+G++VEVKRA+PK  N  G         G +S    G+ 
Sbjct: 155 FVSFDSEDAVDSVLHKTFHDLSGKQVEVKRALPKDANPGG---------GGRSMGGGGSG 214

Query: 121 NVPFPYPYYGSGYPIYPG------FTHFPHYGPAVDLYGSNFYGNWFPPSFGNMASDGSW 177
                Y  YG     Y G      F      G  +  YGS+ YG      +GN  S+G+ 
Sbjct: 215 G----YQGYGGNESSYDGRMDSNRFLQHQSVGNGLPSYGSSGYG----AGYGN-GSNGAG 258

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BLAST of PI0023508 vs. ExPASy Swiss-Prot
Match: Q9VVE5 (RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=Rbp6 PE=2 SV=3)

HSP 1 Score: 97.8 bits (242), Expect = 1.7e-19
Identity = 62/145 (42.76%), Postives = 87/145 (60.00%), Query Frame = 0


Query: 13  SRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGFGFVTFESLESVDS 72
           +R +KIFVGGLSA  T ++ KSYFE+FG I D ++M D  TNR RGFGFVTF+S + VD 
Sbjct: 115 TRTKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVVDK 174

Query: 73  VLQKNFHELNGRRVEVKRAIPKKGN-SNGVNSPNARTQGAKSPLLNGNRNVP--FPYPYY 132
           V + +FHE+N + VE K+A PK+      +    A  + A   ++ G   +P  FP   Y
Sbjct: 175 VCEIHFHEINNKMVECKKAQPKEVMLPANLAKTRAAGRSAYDNIMWGLGTLPEGFPAAAY 234

Query: 133 GSGYPIYPGFTHFPHYG---PAVDL 152
            + Y    G++ +P +G   P VDL
Sbjct: 235 -AAYAAGRGYSGYPSFGLPYPTVDL 258

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BLAST of PI0023508 vs. ExPASy Swiss-Prot
Match: O43347 (RNA-binding protein Musashi homolog 1 OS=Homo sapiens OX=9606 GN=MSI1 PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.9e-19
Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 0


Query: 13  SRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGFGFVTFESLESVDS 72
           +R +KIFVGGLS   T ++ K YFE+FG++ D ++M D  TNR RGFGFVTFES + V+ 
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165

Query: 73  VLQKNFHELNGRRVEVKRAIPKKGNSNGVNSPNARTQGAKSPLLNGNRNVPFPYPYY--G 132
           V + +FHE+N + VE K+A PK+     V SP    +G        +R +P+    +  G
Sbjct: 166 VCEIHFHEINNKMVECKKAQPKE-----VMSPTGSARGR-------SRVMPYGMDAFMLG 222

Query: 133 SGYPIYPGF 140
            G   YPGF
Sbjct: 226 IGMLGYPGF 222

[Close]

BLAST of PI0023508 vs. ExPASy Swiss-Prot
Match: Q61474 (RNA-binding protein Musashi homolog 1 OS=Mus musculus OX=10090 GN=Msi1 PE=1 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 3.8e-19
Identity = 56/129 (43.41%), Postives = 78/129 (60.47%), Query Frame = 0


Query: 13  SRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGFGFVTFESLESVDS 72
           +R +KIFVGGLS   T ++ K YFE+FG++ D ++M D  TNR RGFGFVTFES + V+ 
Sbjct: 106 TRTKKIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEK 165

Query: 73  VLQKNFHELNGRRVEVKRAIPKKGNSNGVNSPNARTQGAKSPLLNGNRNVPFPYPYY--G 132
           V + +FHE+N + VE K+A PK+     V SP    +G        +R +P+    +  G
Sbjct: 166 VCEIHFHEINNKMVECKKAQPKE-----VMSPTGSARGR-------SRVMPYGMDAFMLG 222

Query: 133 SGYPIYPGF 140
            G   YPGF
Sbjct: 226 IGMLGYPGF 222

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BLAST of PI0023508 vs. ExPASy TrEMBL
Match: A0A0A0L563 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G644730 PE=4 SV=1)

HSP 1 Score: 382.1 bits (980), Expect = 1.7e-102
Identity = 195/241 (80.91%), Postives = 206/241 (85.48%), Query Frame = 0


Query: 1   MSNTRMDNNNDHSRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGFG 60
           MS TRMDNNND  RGRKIFVGGLSAELTE+EF+SYFE FGQITD+VVMHDSVTNR RGFG
Sbjct: 1   MSTTRMDNNNDQCRGRKIFVGGLSAELTEEEFRSYFENFGQITDVVVMHDSVTNRPRGFG 60

Query: 61  FVTFESLESVDSVLQKNFHELNGRRVEVKRAIPKKGNSNGVNSPNARTQGAKSPLLNGNR 120
           FVTFESLESVDSVLQ+NFHELNGRRVEVKRAIPKKGN NGV+ PNAR   AKSPLLNGNR
Sbjct: 61  FVTFESLESVDSVLQRNFHELNGRRVEVKRAIPKKGNYNGVHIPNAR--AAKSPLLNGNR 120

Query: 121 NVPFPYPYYGSGYPIYPGFTHFPHYGPAVDLYGSNFYGNWFPPSFGNMASDGSWYGPDFF 180
           NVPFPYPYYGSGYPIYPGFTHFPHYG AVD YGSNFYGNWFPP   N+ASDG W+GP+FF
Sbjct: 121 NVPFPYPYYGSGYPIYPGFTHFPHYGAAVDSYGSNFYGNWFPPGSANIASDGWWHGPNFF 180

Query: 181 GFGMLPPLRRNFLMQSSKGIL---DTGMTDTGRNYEIKPNTTGKRNMSADAVPFQIKNRS 239
             GMLPPL RN LM  SKGI      GM +T RN EIK NT GKR MSADA PFQIK+R+
Sbjct: 181 SVGMLPPLCRNSLMHPSKGIYIGSRNGMANT-RNGEIKQNTAGKRIMSADAAPFQIKDRT 238

[Close]

BLAST of PI0023508 vs. ExPASy TrEMBL
Match: A0A6J1J2K5 (RNA-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481242 PE=4 SV=1)

HSP 1 Score: 265.0 bits (676), Expect = 3.0e-67
Identity = 147/243 (60.49%), Postives = 173/243 (71.19%), Query Frame = 0


Query: 1   MSN-TRMDNNNDHSRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGF 60
           MSN TRM+   D  RGRKIFVGGLSAELTED+FK+YFEKFG++TD+VVM DSVT R RGF
Sbjct: 1   MSNGTRME---DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGF 60

Query: 61  GFVTFESLESVDSVLQKNFHELNGRRVEVKRAIPKKGNSNGVNSPNARTQGAKSPLLNGN 120
           GF+TF+S++SVDSVLQ NFHELNGRRVEVKRAIPKKGN NG +        +KSPL    
Sbjct: 61  GFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI-------SKSPL--SE 120

Query: 121 RNVPFPYPYYGSGYPIYPGFTHFPHYGPAVDLYGSNFYGNWFPPSFGNMASDGSWYGPDF 180
            NV   YPYY  GY +YPGFT FP YGP   LYGS+ YGNWF PSFG MAS  +WYGP+F
Sbjct: 121 SNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNF 180

Query: 181 FGFGMLPPLRRNFLM---QSSKGILD--TGMTDTGRNYEIKPNTTGKRNMSADAVPFQIK 238
             FGM PP  +N L+    SS G+     G        +++P T  ++NMSADAVPF  K
Sbjct: 181 --FGMFPPPHKNSLVYPTYSSNGLSTPVAGYETADARRKVEPPTRAQKNMSADAVPFHAK 229

[Close]

BLAST of PI0023508 vs. ExPASy TrEMBL
Match: A0A6J1FS87 (RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446397 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 2.2e-65
Identity = 139/232 (59.91%), Postives = 164/232 (70.69%), Query Frame = 0


Query: 11  DHSRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGFGFVTFESLESV 70
           D  RGRKIFVGGLSAELTED+FK+YFEKFG++TD+VVM DSVT R RGFGF+TF+S++SV
Sbjct: 9   DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGFGFITFDSVQSV 68

Query: 71  DSVLQKNFHELNGRRVEVKRAIPKKGNSNGVNSPNARTQGAKSPLLNGNRNVPFPYPYYG 130
           DSVLQ NFHELNGRRVEVKRAIPKKGN NG +        +KSPL     NV   YPYY 
Sbjct: 69  DSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI-------SKSPL--SESNVLPSYPYYS 128

Query: 131 SGYPIYPGFTHFPHYGPAVDLYGSNFYGNWFPPSFGNMASDGSWYGPDFFGFGMLPPLRR 190
            GY +YPGFT FP YGP   LYGS+ YGNWF PSFG MAS  +WY P+F  FGM PP  +
Sbjct: 129 CGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNF--FGMFPPPHK 188

Query: 191 NFLM---QSSKGILD--TGMTDTGRNYEIKPNTTGKRNMSADAVPFQIKNRS 238
           N L+    SS G+     G        ++ P T  ++NMSADAVPF  K+++
Sbjct: 189 NSLVYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAKDKA 229

[Close]

BLAST of PI0023508 vs. ExPASy TrEMBL
Match: A0A6J1C724 (RNA-binding protein 1-like OS=Momordica charantia OX=3673 GN=LOC111008498 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 2.5e-53
Identity = 131/248 (52.82%), Postives = 162/248 (65.32%), Query Frame = 0


Query: 2   SNTRMDNNNDHSRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGFGF 61
           S+ RM++NND SRG+KIFVGGL ++LTE+EFKSYFEKFGQITD+VVM DSVTNR RGFGF
Sbjct: 4   SSNRMESNNDQSRGKKIFVGGLPSDLTENEFKSYFEKFGQITDVVVMQDSVTNRPRGFGF 63

Query: 62  VTFESLESVDSVLQKNFHELNGRRVEVKRAIPKKGNSNGVNSPNARTQGAKSPLLNGNRN 121
           +TF+S+ESV+ VLQ NFHELNGRRVEVKRA+PK  N N  N      Q  KSPL   + +
Sbjct: 64  ITFDSVESVNYVLQNNFHELNGRRVEVKRAVPKNRNCNSSN-----PQRGKSPL---SPH 123

Query: 122 VPFPYPYYGSGYPIYPGFTHFPHYGPAVDLYGSNFYGNW-FPPSFGN------MASDGSW 181
           VP  YP++ SG  +YPG+  FPHY      YGS+ YG+W +   +G       +    +W
Sbjct: 124 VPLYYPHFSSGPVVYPGYAPFPHY------YGSSLYGSWHYNGLYGTGHEAPPLPLGSAW 183

Query: 182 YGPDFFGFGMLPPLRRNFLMQ---SSKG--ILDTGMTDTGRNYEIKPNTTGKRNMSADAV 238
           Y P+ FG GM P    N ++    SSKG  +LD  M   GR            NMSADAV
Sbjct: 184 YAPNVFGDGMFPSPYINSVIHPVYSSKGGRLLDP-MAGNGRR---------NGNMSADAV 227

[Close]

BLAST of PI0023508 vs. ExPASy TrEMBL
Match: A0A2I4DTF8 (heterogeneous nuclear ribonucleoprotein 1-like OS=Juglans regia OX=51240 GN=LOC108983296 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 3.3e-37
Identity = 89/180 (49.44%), Postives = 115/180 (63.89%), Query Frame = 0


Query: 7   DNNNDHSRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGFGFVTFES 66
           DN ++  R +KIFVGGLSA +TE+EFK+YFE+FG++TD+VVMHDS T+R RGFGF+TF+S
Sbjct: 105 DNGDNLFRTKKIFVGGLSASITEEEFKNYFERFGKVTDVVVMHDSTTHRPRGFGFITFDS 164

Query: 67  LESVDSVLQKNFHELNGRRVEVKRAIPKKGNSNGVNSPNARTQGAKSPLLNGNRNVPFPY 126
            E+V +V+Q +FHELNGR VEVKRA+PK+ N+   N  N R +G   P        P  Y
Sbjct: 165 EEAVVNVMQNSFHELNGRLVEVKRAVPKEANNGSDNGFNMRIEGRGGP--------PGNY 224

Query: 127 PYYGSGYPIYPGFTHFPHYGP-AVDLYGSNFYGNWFP--------PSFGNMASDGSWYGP 178
           P Y  GY I PG+  FP +      LYG+  YG W+P         +    A   SWYGP
Sbjct: 225 PPYSPGYWILPGYAPFPGFSSGGGSLYGAGIYGGWYPTGGSGGIGSAVAPFAPRSSWYGP 276

[Close]

BLAST of PI0023508 vs. NCBI nr
Match: XP_038898856.1 (RNA-binding protein 1-like [Benincasa hispida])

HSP 1 Score: 384.0 bits (985), Expect = 9.2e-103
Identity = 193/245 (78.78%), Postives = 210/245 (85.71%), Query Frame = 0


Query: 1   MSNTRMDNNNDHSRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGFG 60
           MS TRM+NNND  RGRKIFVGGLSAELTEDEFK+YFEKFG+ITD+VVMHDSVTNR RGFG
Sbjct: 3   MSTTRMENNNDQCRGRKIFVGGLSAELTEDEFKNYFEKFGKITDVVVMHDSVTNRPRGFG 62

Query: 61  FVTFESLESVDSVLQKNFHELNGRRVEVKRAIPKKGNSNGVNSPNARTQGAKSPLLNGNR 120
           F+TFES+ESVDSVLQ NFHELNGRRVEVKRAIPKKGN NG + PNARTQG KSPL N NR
Sbjct: 63  FITFESVESVDSVLQSNFHELNGRRVEVKRAIPKKGNYNGGHIPNARTQGGKSPLPNSNR 122

Query: 121 NVPFPYPYYGSGYPIYPGFTHFPHY-GPAVDLYGSNFYGNWFPPSFGNMASDGSWYGPDF 180
           NVPFPYPYYGS YP+YPGFT FPHY GP VDLYGS+ YGNWFPPSFGNMAS+G+WYGP+F
Sbjct: 123 NVPFPYPYYGSSYPVYPGFTPFPHYGGPGVDLYGSHLYGNWFPPSFGNMASEGTWYGPNF 182

Query: 181 FGFGMLPPLRRNFL---MQSSKGILDT----GMTDTGRNYEIKPNTTGKRNMSADAVPFQ 238
           FG G+ PP  RN L   + SSKG+ DT    GM DT RN EIK NTTGKR MSADAVPFQ
Sbjct: 183 FGVGIFPPPYRNSLIPPIYSSKGLSDTGTGNGMVDTRRNGEIKQNTTGKRIMSADAVPFQ 242

[Close]

BLAST of PI0023508 vs. NCBI nr
Match: XP_004141412.1 (RNA-binding protein 1 [Cucumis sativus])

HSP 1 Score: 382.1 bits (980), Expect = 3.5e-102
Identity = 195/241 (80.91%), Postives = 206/241 (85.48%), Query Frame = 0


Query: 1   MSNTRMDNNNDHSRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGFG 60
           MS TRMDNNND  RGRKIFVGGLSAELTE+EF+SYFE FGQITD+VVMHDSVTNR RGFG
Sbjct: 1   MSTTRMDNNNDQCRGRKIFVGGLSAELTEEEFRSYFENFGQITDVVVMHDSVTNRPRGFG 60

Query: 61  FVTFESLESVDSVLQKNFHELNGRRVEVKRAIPKKGNSNGVNSPNARTQGAKSPLLNGNR 120
           FVTFESLESVDSVLQ+NFHELNGRRVEVKRAIPKKGN NGV+ PNAR   AKSPLLNGNR
Sbjct: 61  FVTFESLESVDSVLQRNFHELNGRRVEVKRAIPKKGNYNGVHIPNAR--AAKSPLLNGNR 120

Query: 121 NVPFPYPYYGSGYPIYPGFTHFPHYGPAVDLYGSNFYGNWFPPSFGNMASDGSWYGPDFF 180
           NVPFPYPYYGSGYPIYPGFTHFPHYG AVD YGSNFYGNWFPP   N+ASDG W+GP+FF
Sbjct: 121 NVPFPYPYYGSGYPIYPGFTHFPHYGAAVDSYGSNFYGNWFPPGSANIASDGWWHGPNFF 180

Query: 181 GFGMLPPLRRNFLMQSSKGIL---DTGMTDTGRNYEIKPNTTGKRNMSADAVPFQIKNRS 239
             GMLPPL RN LM  SKGI      GM +T RN EIK NT GKR MSADA PFQIK+R+
Sbjct: 181 SVGMLPPLCRNSLMHPSKGIYIGSRNGMANT-RNGEIKQNTAGKRIMSADAAPFQIKDRT 238

[Close]

BLAST of PI0023508 vs. NCBI nr
Match: KAE8649895.1 (hypothetical protein Csa_012205 [Cucumis sativus])

HSP 1 Score: 382.1 bits (980), Expect = 3.5e-102
Identity = 195/241 (80.91%), Postives = 206/241 (85.48%), Query Frame = 0


Query: 1   MSNTRMDNNNDHSRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGFG 60
           MS TRMDNNND  RGRKIFVGGLSAELTE+EF+SYFE FGQITD+VVMHDSVTNR RGFG
Sbjct: 53  MSTTRMDNNNDQCRGRKIFVGGLSAELTEEEFRSYFENFGQITDVVVMHDSVTNRPRGFG 112

Query: 61  FVTFESLESVDSVLQKNFHELNGRRVEVKRAIPKKGNSNGVNSPNARTQGAKSPLLNGNR 120
           FVTFESLESVDSVLQ+NFHELNGRRVEVKRAIPKKGN NGV+ PNAR   AKSPLLNGNR
Sbjct: 113 FVTFESLESVDSVLQRNFHELNGRRVEVKRAIPKKGNYNGVHIPNAR--AAKSPLLNGNR 172

Query: 121 NVPFPYPYYGSGYPIYPGFTHFPHYGPAVDLYGSNFYGNWFPPSFGNMASDGSWYGPDFF 180
           NVPFPYPYYGSGYPIYPGFTHFPHYG AVD YGSNFYGNWFPP   N+ASDG W+GP+FF
Sbjct: 173 NVPFPYPYYGSGYPIYPGFTHFPHYGAAVDSYGSNFYGNWFPPGSANIASDGWWHGPNFF 232

Query: 181 GFGMLPPLRRNFLMQSSKGIL---DTGMTDTGRNYEIKPNTTGKRNMSADAVPFQIKNRS 239
             GMLPPL RN LM  SKGI      GM +T RN EIK NT GKR MSADA PFQIK+R+
Sbjct: 233 SVGMLPPLCRNSLMHPSKGIYIGSRNGMANT-RNGEIKQNTAGKRIMSADAAPFQIKDRT 290

[Close]

BLAST of PI0023508 vs. NCBI nr
Match: XP_022982410.1 (RNA-binding protein 1-like [Cucurbita maxima])

HSP 1 Score: 265.0 bits (676), Expect = 6.2e-67
Identity = 147/243 (60.49%), Postives = 173/243 (71.19%), Query Frame = 0


Query: 1   MSN-TRMDNNNDHSRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGF 60
           MSN TRM+   D  RGRKIFVGGLSAELTED+FK+YFEKFG++TD+VVM DSVT R RGF
Sbjct: 1   MSNGTRME---DQFRGRKIFVGGLSAELTEDDFKNYFEKFGRVTDVVVMRDSVTKRPRGF 60

Query: 61  GFVTFESLESVDSVLQKNFHELNGRRVEVKRAIPKKGNSNGVNSPNARTQGAKSPLLNGN 120
           GF+TF+S++SVDSVLQ NFHELNGRRVEVKRAIPKKGN NG +        +KSPL    
Sbjct: 61  GFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI-------SKSPL--SE 120

Query: 121 RNVPFPYPYYGSGYPIYPGFTHFPHYGPAVDLYGSNFYGNWFPPSFGNMASDGSWYGPDF 180
            NV   YPYY  GY +YPGFT FP YGP   LYGS+ YGNWF PSFG MAS  +WYGP+F
Sbjct: 121 SNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYGPNF 180

Query: 181 FGFGMLPPLRRNFLM---QSSKGILD--TGMTDTGRNYEIKPNTTGKRNMSADAVPFQIK 238
             FGM PP  +N L+    SS G+     G        +++P T  ++NMSADAVPF  K
Sbjct: 181 --FGMFPPPHKNSLVYPTYSSNGLSTPVAGYETADARRKVEPPTRAQKNMSADAVPFHAK 229

[Close]

BLAST of PI0023508 vs. NCBI nr
Match: KAG7037746.1 (RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 260.0 bits (663), Expect = 2.0e-65
Identity = 145/243 (59.67%), Postives = 171/243 (70.37%), Query Frame = 0


Query: 1   MSN-TRMDNNNDHSRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGF 60
           MSN TRM+   D  RGRKIFVGGLSAELTED+FKSYFEKFG++TD+VVM DSVT R RGF
Sbjct: 20  MSNGTRME---DQFRGRKIFVGGLSAELTEDDFKSYFEKFGRVTDVVVMRDSVTKRPRGF 79

Query: 61  GFVTFESLESVDSVLQKNFHELNGRRVEVKRAIPKKGNSNGVNSPNARTQGAKSPLLNGN 120
           GF+TF+S++SVDSVLQ NFHELNGRRVEVKRAIPKKGN NG +        +KSPL    
Sbjct: 80  GFITFDSVQSVDSVLQNNFHELNGRRVEVKRAIPKKGNYNGGHI-------SKSPL--SE 139

Query: 121 RNVPFPYPYYGSGYPIYPGFTHFPHYGPAVDLYGSNFYGNWFPPSFGNMASDGSWYGPDF 180
            NV   YPYY  GY +YPGFT FP YGP   LYGS+ YGNWF PSFG MAS  +WY P+F
Sbjct: 140 SNVLPSYPYYSCGYTVYPGFTPFPPYGPGFGLYGSDPYGNWFSPSFGPMASPAAWYAPNF 199

Query: 181 FGFGMLPPLRRNFLM---QSSKGILD--TGMTDTGRNYEIKPNTTGKRNMSADAVPFQIK 238
             FGM PP  ++ L+    SS G+     G        ++ P T  ++NMSADAVPF  K
Sbjct: 200 --FGMFPPPHKDSLVYPTYSSNGLSTPVAGYETADARRKVDPPTRAQKNMSADAVPFHAK 248

[Close]

BLAST of PI0023508 vs. TAIR 10
Match: AT1G58470.1 (RNA-binding protein 1 )

HSP 1 Score: 135.2 bits (339), Expect = 6.9e-32
Identity = 75/133 (56.39%), Postives = 95/133 (71.43%), Query Frame = 0


Query: 6   MDNNNDHSRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGFGFVTFE 65
           M +N   SR +KIFVGGLS+  TE+EFKSYFE+FG+ TD+VVMHD VTNR RGFGFVT++
Sbjct: 110 MSSNGVTSRTKKIFVGGLSSNTTEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYD 169

Query: 66  SLESVDSVLQKNFHELNGRRVEVKRAIPKKG----NSNGVNSPNARTQGAKSPLL---NG 125
           S +SV+ V+Q NFHEL+ +RVEVKRAIPK+G    N N VN P + +    +P +   NG
Sbjct: 170 SEDSVEVVMQSNFHELSDKRVEVKRAIPKEGIQSNNGNAVNIPPSYSSFQATPYVPEQNG 229

Query: 126 NRNV-PFPYPYYG 131
              V  FP P +G
Sbjct: 230 YGMVLQFPPPVFG 242

[Close]

BLAST of PI0023508 vs. TAIR 10
Match: AT4G26650.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-27
Identity = 72/159 (45.28%), Postives = 95/159 (59.75%), Query Frame = 0


Query: 9   NNDHSRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGFGFVTFESLE 68
           N   +R +KIFVGGL + +TE EFK+YF++FG I D+VVM+D  T R RGFGF+TF+S E
Sbjct: 115 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 174

Query: 69  SVDSVLQKNFHELNGRRVEVKRAIPKKGNSNGVNSPNARTQGAKSPLLNGNRNVPFPYPY 128
           SVD VL K FHELNG+ VEVKRA+PK+ +S    +PN      +SPL+            
Sbjct: 175 SVDMVLHKTFHELNGKMVEVKRAVPKELSS---TTPN------RSPLIG----------- 234

Query: 129 YGSGYPIYPGFTHFPHYGPAVDLYGSNFYGNWFPPSFGN 168
           YG+ Y + P  +             +N Y N FPP + N
Sbjct: 235 YGNNYGVVPNRS------------SANSYFNSFPPGYNN 241

[Close]

BLAST of PI0023508 vs. TAIR 10
Match: AT4G26650.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 121.3 bits (303), Expect = 1.0e-27
Identity = 72/159 (45.28%), Postives = 95/159 (59.75%), Query Frame = 0


Query: 9   NNDHSRGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGFGFVTFESLE 68
           N   +R +KIFVGGL + +TE EFK+YF++FG I D+VVM+D  T R RGFGF+TF+S E
Sbjct: 112 NGGGARTKKIFVGGLPSSITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEE 171

Query: 69  SVDSVLQKNFHELNGRRVEVKRAIPKKGNSNGVNSPNARTQGAKSPLLNGNRNVPFPYPY 128
           SVD VL K FHELNG+ VEVKRA+PK+ +S    +PN      +SPL+            
Sbjct: 172 SVDMVLHKTFHELNGKMVEVKRAVPKELSS---TTPN------RSPLIG----------- 231

Query: 129 YGSGYPIYPGFTHFPHYGPAVDLYGSNFYGNWFPPSFGN 168
           YG+ Y + P  +             +N Y N FPP + N
Sbjct: 232 YGNNYGVVPNRS------------SANSYFNSFPPGYNN 238

[Close]

BLAST of PI0023508 vs. TAIR 10
Match: AT5G55550.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-26
Identity = 72/164 (43.90%), Postives = 97/164 (59.15%), Query Frame = 0


Query: 14  RGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGFGFVTFESLESVDSV 73
           R +KIFVGGL + +TE+EFK+YF++FG I D+VVM+D  T R RGFGF+TF+S ++VD V
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167

Query: 74  LQKNFHELNGRRVEVKRAIPKKGNSNGVNSPNARTQGAKSPLLNGNRNVPFPYPYYGSGY 133
           L K FHELNG+ VEVKRA+PK+       SP       +SPL +G          YG G 
Sbjct: 168 LHKTFHELNGKLVEVKRAVPKE------ISP---VSNIRSPLASGVN--------YGGGS 227

Query: 134 PIYPGFTHFPHYGPAVDLYGS-NFYGNWFPPSFGNMASDGSWYG 177
              P  ++F ++ P    Y S    G  F P  G+  +  S +G
Sbjct: 228 NRMPANSYFNNFAPGPGFYNSLGPVGRRFSPVIGSGRNAVSAFG 254

[Close]

BLAST of PI0023508 vs. TAIR 10
Match: AT5G55550.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 117.9 bits (294), Expect = 1.1e-26
Identity = 72/164 (43.90%), Postives = 97/164 (59.15%), Query Frame = 0


Query: 14  RGRKIFVGGLSAELTEDEFKSYFEKFGQITDIVVMHDSVTNRRRGFGFVTFESLESVDSV 73
           R +KIFVGGL + +TE+EFK+YF++FG I D+VVM+D  T R RGFGF+TF+S ++VD V
Sbjct: 108 RTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSDDAVDRV 167

Query: 74  LQKNFHELNGRRVEVKRAIPKKGNSNGVNSPNARTQGAKSPLLNGNRNVPFPYPYYGSGY 133
           L K FHELNG+ VEVKRA+PK+       SP       +SPL +G          YG G 
Sbjct: 168 LHKTFHELNGKLVEVKRAVPKE------ISP---VSNIRSPLASGVN--------YGGGS 227

Query: 134 PIYPGFTHFPHYGPAVDLYGS-NFYGNWFPPSFGNMASDGSWYG 177
              P  ++F ++ P    Y S    G  F P  G+  +  S +G
Sbjct: 228 NRMPANSYFNNFAPGPGFYNSLGPVGRRFSPVIGSGRNAVSAFG 254

The following BLAST results are available for this feature:

BLAST of PI0023508 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C652	9.8e-31	56.39	RNA-binding protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBP1 PE=2 SV=1	[more]
Q8W034	2.1e-25	39.56	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana OX=3702 GN=RNP...	[more]
Q9VVE5	1.7e-19	42.76	RNA-binding protein Musashi homolog Rbp6 OS=Drosophila melanogaster OX=7227 GN=R...	[more]
O43347	2.9e-19	43.41	RNA-binding protein Musashi homolog 1 OS=Homo sapiens OX=9606 GN=MSI1 PE=1 SV=1	[more]
Q61474	3.8e-19	43.41	RNA-binding protein Musashi homolog 1 OS=Mus musculus OX=10090 GN=Msi1 PE=1 SV=1	[more]

BLAST of PI0023508 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L563	1.7e-102	80.91	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G644730 PE=4 SV...	[more]
A0A6J1J2K5	3.0e-67	60.49	RNA-binding protein 1-like OS=Cucurbita maxima OX=3661 GN=LOC111481242 PE=4 SV=1	[more]
A0A6J1FS87	2.2e-65	59.91	RNA-binding protein 1-like OS=Cucurbita moschata OX=3662 GN=LOC111446397 PE=4 SV...	[more]
A0A6J1C724	2.5e-53	52.82	RNA-binding protein 1-like OS=Momordica charantia OX=3673 GN=LOC111008498 PE=4 S...	[more]
A0A2I4DTF8	3.3e-37	49.44	heterogeneous nuclear ribonucleoprotein 1-like OS=Juglans regia OX=51240 GN=LOC1...	[more]

BLAST of PI0023508 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038898856.1	9.2e-103	78.78	RNA-binding protein 1-like [Benincasa hispida]	[more]
XP_004141412.1	3.5e-102	80.91	RNA-binding protein 1 [Cucumis sativus]	[more]
KAE8649895.1	3.5e-102	80.91	hypothetical protein Csa_012205 [Cucumis sativus]	[more]
XP_022982410.1	6.2e-67	60.49	RNA-binding protein 1-like [Cucurbita maxima]	[more]
KAG7037746.1	2.0e-65	59.67	RNA-binding protein 1, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of PI0023508 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G58470.1	6.9e-32	56.39	RNA-binding protein 1	[more]
AT4G26650.1	1.0e-27	45.28	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT4G26650.2	1.0e-27	45.28	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G55550.1	1.1e-26	43.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT5G55550.3	1.1e-26	43.90	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 17..89 e-value: 5.4E-25 score: 99.0
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 18..86 e-value: 3.4E-18 score: 65.3
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 16..93 score: 18.973166
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 13..103 e-value: 1.2E-27 score: 97.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..114
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 96..114
None	No IPR available	PANTHER	PTHR48032	RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6	coord: 6..225
None	No IPR available	PANTHER	PTHR48032:SF12	NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED	coord: 6..225
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 9..105

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023508.1	PI0023508.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding