Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTAATAAAATGGTTGTATTTTCACCTAGCAGAAAAAGGTCTGCTGAACAAGTCGTTTCCATACTACGACGAACTATCATATGTGTTCGGGAAAGACCGCGCTACTGGACAACGCGCGGAGATGTTCGCAGATGTCAGTTCTAATGTGCCCGGTGGTTTCGGGGAGTTCGTTGGGGACGGTGTTTCAAATATGGGCATCCCATGCATGTGCAACCAGGGACATCCCATGTCACCAGATGACGTAGTGGGCTCACGTCCGGAACGGTCGGGTGAGGGTAGGGCGAGTTCGAGCGGTTCGAAAAGGAAGTGAGGGGGCCATAATGCAAAAGCTCTGGAGATCATTCGCAGCGCCATGGAATATGGGAATGACCAGCTTAAGGCTATTGCAGAATGGCCGAAGGAAGCACGGGAAGACGAATACACAACCCATGTAGCAGTCGTTACGCAATTGCAGGCCATCCCTAGACTATCAAGAATCGCCAAGGCGCGCTGTATACAGATACTCATGCGAAACGTGGTCGATATGAAAGCGTTTTTGCAAATACCTGACGACTTTAAGATCAACTACTGCACGGTCATTCTCCAAGACAATGCTTGA
mRNA sequence
ATGAATCTAATAAAATGGTTGTATTTTCACCTAGCAGAAAAAGGTCTGCTGAACAAGTCGTTTCCATACTACGACGAACTATCATATGTGTTCGGGAAAGACCGCGCTACTGGACAACGCGCGGAGATGTTCGCAGATGTCAGTTCTAATGTGCCCGGTGGTTTCGGGGAGTTCGTTGGGGACGGTGTTTCAAATATGGGCATCCCATGCATGTGCAACCAGGGACATCCCATGTCACCAGATGACGTAGTGGGCTCACGTCCGGAACGGTCGGGTGAGGGTAGGGCGAGTTCGAGCGGTTCGAAAAGGAACGCCATGGAATATGGGAATGACCAGCTTAAGGCTATTGCAGAATGGCCGAAGGAAGCACGGGAAGACGAATACACAACCCATGTAGCAGTCGTTACGCAATTGCAGGCCATCCCTAGACTATCAAGAATCGCCAAGGCGCGCTGTATACAGATACTCATGCGAAACGTGGTCGATATGAAAGCGTTTTTGCAAATACCTGACGACTTTAAGATCAACTACTGCACGGTCATTCTCCAAGACAATGCTTGA
Coding sequence (CDS)
ATGAATCTAATAAAATGGTTGTATTTTCACCTAGCAGAAAAAGGTCTGCTGAACAAGTCGTTTCCATACTACGACGAACTATCATATGTGTTCGGGAAAGACCGCGCTACTGGACAACGCGCGGAGATGTTCGCAGATGTCAGTTCTAATGTGCCCGGTGGTTTCGGGGAGTTCGTTGGGGACGGTGTTTCAAATATGGGCATCCCATGCATGTGCAACCAGGGACATCCCATGTCACCAGATGACGTAGTGGGCTCACGTCCGGAACGGTCGGGTGAGGGTAGGGCGAGTTCGAGCGGTTCGAAAAGGAACGCCATGGAATATGGGAATGACCAGCTTAAGGCTATTGCAGAATGGCCGAAGGAAGCACGGGAAGACGAATACACAACCCATGTAGCAGTCGTTACGCAATTGCAGGCCATCCCTAGACTATCAAGAATCGCCAAGGCGCGCTGTATACAGATACTCATGCGAAACGTGGTCGATATGAAAGCGTTTTTGCAAATACCTGACGACTTTAAGATCAACTACTGCACGGTCATTCTCCAAGACAATGCTTGA
Protein sequence
MNLIKWLYFHLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSKRNAMEYGNDQLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKINYCTVILQDNA
Homology
BLAST of PI0023451 vs. ExPASy TrEMBL
Match:
A0A5A7U4M2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold404G00330 PE=4 SV=1)
HSP 1 Score: 182.2 bits (461), Expect = 2.0e-42
Identity = 100/194 (51.55%), Postives = 126/194 (64.95%), Query Frame = 0
Query: 6 WLYFHLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSN 65
W+ H A KGLLNKSF +YDELSYVFGKDRATG RAE FAD+ SN P G+ F D V +
Sbjct: 60 WVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADTVLD 119
Query: 66 MGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK--------------RNAMEYGND 125
P M + G MSPDD++ +R R E R SSGSK R A+EYGN+
Sbjct: 120 TDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKWKRPGHATDSGDIVRTAIEYGNE 179
Query: 126 QLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPD 185
QL IAEWP R+D T +V QL+AIP L+ + + R ++I+MRNV DMKAFL++PD
Sbjct: 180 QLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRIIMRNVDDMKAFLKVPD 239
BLAST of PI0023451 vs. ExPASy TrEMBL
Match:
A0A5A7TYQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002060 PE=4 SV=1)
HSP 1 Score: 181.4 bits (459), Expect = 3.4e-42
Identity = 100/194 (51.55%), Postives = 125/194 (64.43%), Query Frame = 0
Query: 6 WLYFHLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSN 65
W+ H A KGLLNKSF +YDELSYVFGKDRATG RAE FAD+ SN P G+ F D VS+
Sbjct: 79 WVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADDVSD 138
Query: 66 MGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK--------------RNAMEYGND 125
M + G MSPDD++ +R R E R SSGSK R AMEYGN+
Sbjct: 139 TDFLPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSGHATDSGDIVRTAMEYGNE 198
Query: 126 QLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPD 185
QL IAEWP R+D T +V QL+ IP L+ + + R ++I+MRNV DMKAFL++PD
Sbjct: 199 QLHRIAEWPILQRQDATETRQEIVRQLEVIPELTLMDRCRLMRIIMRNVDDMKAFLEVPD 258
BLAST of PI0023451 vs. ExPASy TrEMBL
Match:
A0A5A7SWD8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold515G00010 PE=3 SV=1)
HSP 1 Score: 178.3 bits (451), Expect = 2.9e-41
Identity = 99/190 (52.11%), Postives = 123/190 (64.74%), Query Frame = 0
Query: 10 HLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIP 69
H A KGLLNKSF +YDELSYVFGKDRATG RAE FAD+ SN P G+ F D V +
Sbjct: 454 HPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNNPPGYDAFAADAVPDTDFS 513
Query: 70 CMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK--------------RNAMEYGNDQLKA 129
M + G MSPDD++ +R R E R SSGSK R A+EYGN+QL
Sbjct: 514 PMYSLGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHR 573
Query: 130 IAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKI 186
IAEWP R+D T +V QL+AIP L+ + + R ++ILMRNV DMKAFL++PD+ K
Sbjct: 574 IAEWPILQRQDATQTRQEIVQQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKY 633
BLAST of PI0023451 vs. ExPASy TrEMBL
Match:
A0A5A7TVM3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00960 PE=4 SV=1)
HSP 1 Score: 178.3 bits (451), Expect = 2.9e-41
Identity = 99/190 (52.11%), Postives = 122/190 (64.21%), Query Frame = 0
Query: 10 HLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIP 69
H A KGLLNKSF +YDELSYVFGKDRATG RAE+FAD+ SN P GF F D + + P
Sbjct: 84 HPAAKGLLNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDPPGFDAFAADAMPDTDFP 143
Query: 70 CMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK--------------RNAMEYGNDQLKA 129
+ G MSPDD++ +R R E R SSGSK R A+EYGN+QL
Sbjct: 144 PTYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHR 203
Query: 130 IAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKI 186
IAEWP R+D T +V L+AIP L+ + + R ++ILMRNV DMKAFL++PD K
Sbjct: 204 IAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKY 263
BLAST of PI0023451 vs. ExPASy TrEMBL
Match:
A0A5A7VF53 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G00250 PE=4 SV=1)
HSP 1 Score: 178.3 bits (451), Expect = 2.9e-41
Identity = 99/190 (52.11%), Postives = 123/190 (64.74%), Query Frame = 0
Query: 10 HLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIP 69
H A KGLLNKSF +YDELSYVFGKDRATG RAE FAD+ SN P G+ F D V + P
Sbjct: 108 HPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFP 167
Query: 70 CMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK--------------RNAMEYGNDQLKA 129
M + G MSPDD++ +R R E R SS SK R A+EYGN+QL
Sbjct: 168 PMYSPGLNMSPDDLMETRTARVSERRNVSSESKRKRPGHATDSGDIVRTAIEYGNEQLHR 227
Query: 130 IAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKI 186
IAEWP R+D T +V QL+AIP L+ + + R ++ILMRNV DMKAFL++PD+ K
Sbjct: 228 IAEWPILQRQDATQTRQDIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKY 287
BLAST of PI0023451 vs. NCBI nr
Match:
KAA0050782.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 182.2 bits (461), Expect = 4.1e-42
Identity = 100/194 (51.55%), Postives = 126/194 (64.95%), Query Frame = 0
Query: 6 WLYFHLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSN 65
W+ H A KGLLNKSF +YDELSYVFGKDRATG RAE FAD+ SN P G+ F D V +
Sbjct: 60 WVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADTVLD 119
Query: 66 MGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK--------------RNAMEYGND 125
P M + G MSPDD++ +R R E R SSGSK R A+EYGN+
Sbjct: 120 TDFPPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKWKRPGHATDSGDIVRTAIEYGNE 179
Query: 126 QLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPD 185
QL IAEWP R+D T +V QL+AIP L+ + + R ++I+MRNV DMKAFL++PD
Sbjct: 180 QLHRIAEWPILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRIIMRNVDDMKAFLKVPD 239
BLAST of PI0023451 vs. NCBI nr
Match:
KAA0048280.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 181.4 bits (459), Expect = 7.1e-42
Identity = 100/194 (51.55%), Postives = 125/194 (64.43%), Query Frame = 0
Query: 6 WLYFHLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSN 65
W+ H A KGLLNKSF +YDELSYVFGKDRATG RAE FAD+ SN P G+ F D VS+
Sbjct: 79 WVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPAGYDAFAADDVSD 138
Query: 66 MGIPCMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK--------------RNAMEYGND 125
M + G MSPDD++ +R R E R SSGSK R AMEYGN+
Sbjct: 139 TDFLPMYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRSGHATDSGDIVRTAMEYGNE 198
Query: 126 QLKAIAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPD 185
QL IAEWP R+D T +V QL+ IP L+ + + R ++I+MRNV DMKAFL++PD
Sbjct: 199 QLHRIAEWPILQRQDATETRQEIVRQLEVIPELTLMDRCRLMRIIMRNVDDMKAFLEVPD 258
BLAST of PI0023451 vs. NCBI nr
Match:
KAA0065737.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 178.3 bits (451), Expect = 6.0e-41
Identity = 99/190 (52.11%), Postives = 123/190 (64.74%), Query Frame = 0
Query: 10 HLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIP 69
H A KGLLNKSF +YDELSYVFGKDRATG RAE FAD+ SN P G+ F D V + P
Sbjct: 108 HPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAFAADAVPDTDFP 167
Query: 70 CMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK--------------RNAMEYGNDQLKA 129
M + G MSPDD++ +R R E R SS SK R A+EYGN+QL
Sbjct: 168 PMYSPGLNMSPDDLMETRTARVSERRNVSSESKRKRPGHATDSGDIVRTAIEYGNEQLHR 227
Query: 130 IAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKI 186
IAEWP R+D T +V QL+AIP L+ + + R ++ILMRNV DMKAFL++PD+ K
Sbjct: 228 IAEWPILQRQDATQTRQDIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKY 287
BLAST of PI0023451 vs. NCBI nr
Match:
KAA0046928.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 178.3 bits (451), Expect = 6.0e-41
Identity = 99/190 (52.11%), Postives = 122/190 (64.21%), Query Frame = 0
Query: 10 HLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIP 69
H A KGLLNKSF +YDELSYVFGKDRATG RAE+FAD+ SN P GF F D + + P
Sbjct: 84 HPAAKGLLNKSFVHYDELSYVFGKDRATGGRAEIFADIGSNDPPGFDAFAADAMPDTDFP 143
Query: 70 CMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK--------------RNAMEYGNDQLKA 129
+ G MSPDD++ +R R E R SSGSK R A+EYGN+QL
Sbjct: 144 PTYSPGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHR 203
Query: 130 IAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKI 186
IAEWP R+D T +V L+AIP L+ + + R ++ILMRNV DMKAFL++PD K
Sbjct: 204 IAEWPILQRQDATQTRQEIVRHLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDHMKY 263
BLAST of PI0023451 vs. NCBI nr
Match:
KAA0034843.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 178.3 bits (451), Expect = 6.0e-41
Identity = 99/190 (52.11%), Postives = 123/190 (64.74%), Query Frame = 0
Query: 10 HLAEKGLLNKSFPYYDELSYVFGKDRATGQRAEMFADVSSNVPGGFGEFVGDGVSNMGIP 69
H A KGLLNKSF +YDELSYVFGKDRATG RAE FAD+ SN P G+ F D V +
Sbjct: 454 HPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNNPPGYDAFAADAVPDTDFS 513
Query: 70 CMCNQGHPMSPDDVVGSRPERSGEGRASSSGSK--------------RNAMEYGNDQLKA 129
M + G MSPDD++ +R R E R SSGSK R A+EYGN+QL
Sbjct: 514 PMYSLGLNMSPDDLMETRTARVSERRNVSSGSKRKRPGHATDSGDIVRTAIEYGNEQLHR 573
Query: 130 IAEWPKEAREDEYTTHVAVVTQLQAIPRLSRIAKARCIQILMRNVVDMKAFLQIPDDFKI 186
IAEWP R+D T +V QL+AIP L+ + + R ++ILMRNV DMKAFL++PD+ K
Sbjct: 574 IAEWPILQRQDATQTRQEIVQQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKY 633
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U4M2 | 2.0e-42 | 51.55 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7TYQ6 | 3.4e-42 | 51.55 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7SWD8 | 2.9e-41 | 52.11 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7TVM3 | 2.9e-41 | 52.11 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| A0A5A7VF53 | 2.9e-41 | 52.11 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
