PI0023434 (gene) Melon (PI 482460) v1

Overview


Name	PI0023434
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr11: 13593255 .. 13593443 (+)
RNA-Seq Expression	PI0023434
Synteny	PI0023434

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGATGCAACAATTGAAGCAGCCATGGTAGAGATGGAAAGGAAAATAAATTTCCTAATGAAAGCTATCGAGGAGCGAGATCATGAAATCGTTGCCTTGAAAGATCATATGAAGGCTCGTGAAACTGCTGAGTCGAGCCAAACTCCTGCTGTTAAAGCCTATGATAAAGGAAAAGCTACGTTGTAG

mRNA sequence

ATGGTAGATGCAACAATTGAAGCAGCCATGGTAGAGATGGAAAGGAAAATAAATTTCCTAATGAAAGCTATCGAGGAGCGAGATCATGAAATCGTTGCCTTGAAAGATCATATGAAGGCTCGTGAAACTGCTGAGTCGAGCCAAACTCCTGCTGTTAAAGCCTATGATAAAGGAAAAGCTACGTTGTAG

Coding sequence (CDS)

ATGGTAGATGCAACAATTGAAGCAGCCATGGTAGAGATGGAAAGGAAAATAAATTTCCTAATGAAAGCTATCGAGGAGCGAGATCATGAAATCGTTGCCTTGAAAGATCATATGAAGGCTCGTGAAACTGCTGAGTCGAGCCAAACTCCTGCTGTTAAAGCCTATGATAAAGGAAAAGCTACGTTGTAG

Protein sequence

MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGKATL

Homology

[Close]

BLAST of PI0023434 vs. ExPASy TrEMBL
Match: A0A5A7SIT1 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00050 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 49/59 (83.05%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGK 60
          MVD T EA +VEMERKINFLMK IEERDHEI ALKD MKA ETAESSQTP VKA DKGK
Sbjct: 2  MVDVTAEATIVEMERKINFLMKVIEERDHEIAALKDQMKASETAESSQTPVVKATDKGK 60

[Close]

BLAST of PI0023434 vs. ExPASy TrEMBL
Match: A0A5D3CJ11 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00130 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 1   MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGKA 60
           M D T EAAM+E ERKINFLMK IE+RDHEI  LKDHMKARET ESS+TPAVKA DKGK 
Sbjct: 57  MADVTAEAAMIEKERKINFLMKVIEDRDHEIATLKDHMKARETIESSKTPAVKADDKGKV 116

Query: 61  TL 63
            L
Sbjct: 117 ML 118

[Close]

BLAST of PI0023434 vs. ExPASy TrEMBL
Match: A0A5A7TCF9 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold84G00470 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 1   MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGKA 60
           M D T EAAM+E ERKINFLMK IE+RDHEI  LKDHMKARET ESS+TPAVKA DKGK 
Sbjct: 57  MADVTAEAAMIEKERKINFLMKVIEDRDHEIATLKDHMKARETIESSKTPAVKADDKGKV 116

Query: 61  TL 63
            L
Sbjct: 117 ML 118

[Close]

BLAST of PI0023434 vs. ExPASy TrEMBL
Match: A0A5D3DK07 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold162G00460 PE=4 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 2.0e-15
Identity = 48/59 (81.36%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1   MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGK 60
           MVD T EA M EMERKINFLMK +EERDHEI ALKD MKA ETAESSQTP VKA DKGK
Sbjct: 86  MVDVTAEATMAEMERKINFLMKVVEERDHEIAALKDQMKAYETAESSQTPVVKATDKGK 144

[Close]

BLAST of PI0023434 vs. ExPASy TrEMBL
Match: A0A5A7T485 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold918G00010 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-15
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGK 60
          M D TIEAAMVEM+RKINFLMKA+EERDHEI AL++ M+ RETAESSQTP VKA DKGK
Sbjct: 39 MADITIEAAMVEMKRKINFLMKAVEERDHEITALREKMRTRETAESSQTPIVKATDKGK 97

[Close]

BLAST of PI0023434 vs. NCBI nr
Match: TYK11178.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 2.5e-15
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 1   MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGKA 60
           M D T EAAM+E ERKINFLMK IE+RDHEI  LKDHMKARET ESS+TPAVKA DKGK 
Sbjct: 57  MADVTAEAAMIEKERKINFLMKVIEDRDHEIATLKDHMKARETIESSKTPAVKADDKGKV 116

Query: 61  TL 63
            L
Sbjct: 117 ML 118

[Close]

BLAST of PI0023434 vs. NCBI nr
Match: KAA0038969.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 2.5e-15
Identity = 48/62 (77.42%), Postives = 51/62 (82.26%), Query Frame = 0


Query: 1   MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGKA 60
           M D T EAAM+E ERKINFLMK IE+RDHEI  LKDHMKARET ESS+TPAVKA DKGK 
Sbjct: 57  MADVTAEAAMIEKERKINFLMKVIEDRDHEIATLKDHMKARETIESSKTPAVKADDKGKV 116

Query: 61  TL 63
            L
Sbjct: 117 ML 118

[Close]

BLAST of PI0023434 vs. NCBI nr
Match: KAA0025726.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 2.5e-15
Identity = 49/59 (83.05%), Postives = 50/59 (84.75%), Query Frame = 0


Query: 1  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGK 60
          MVD T EA +VEMERKINFLMK IEERDHEI ALKD MKA ETAESSQTP VKA DKGK
Sbjct: 2  MVDVTAEATIVEMERKINFLMKVIEERDHEIAALKDQMKASETAESSQTPVVKATDKGK 60

[Close]

BLAST of PI0023434 vs. NCBI nr
Match: TYK23838.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.9 bits (224), Expect = 4.2e-15
Identity = 48/59 (81.36%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 1   MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGK 60
           MVD T EA M EMERKINFLMK +EERDHEI ALKD MKA ETAESSQTP VKA DKGK
Sbjct: 86  MVDVTAEATMAEMERKINFLMKVVEERDHEIAALKDQMKAYETAESSQTPVVKATDKGK 144

[Close]

BLAST of PI0023434 vs. NCBI nr
Match: KAA0037793.1 (uncharacterized protein E6C27_scaffold918G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 90.5 bits (223), Expect = 5.5e-15
Identity = 47/59 (79.66%), Postives = 52/59 (88.14%), Query Frame = 0


Query: 1  MVDATIEAAMVEMERKINFLMKAIEERDHEIVALKDHMKARETAESSQTPAVKAYDKGK 60
          M D TIEAAMVEM+RKINFLMKA+EERDHEI AL++ M+ RETAESSQTP VKA DKGK
Sbjct: 39 MADITIEAAMVEMKRKINFLMKAVEERDHEITALREKMRTRETAESSQTPIVKATDKGK 97

The following BLAST results are available for this feature:

BLAST of PI0023434 vs.


Match Name	E-value	Identity	Description

BLAST of PI0023434 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SIT1	1.2e-15	83.05	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CJ11	1.2e-15	77.42	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TCF9	1.2e-15	77.42	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3DK07	2.0e-15	81.36	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T485	2.7e-15	79.66	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold91...	[more]

BLAST of PI0023434 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11178.1	2.5e-15	77.42	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0038969.1	2.5e-15	77.42	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0025726.1	2.5e-15	83.05	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK23838.1	4.2e-15	81.36	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0037793.1	5.5e-15	79.66	uncharacterized protein E6C27_scaffold918G00010 [Cucumis melo var. makuwa]	[more]

BLAST of PI0023434 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023434.1	PI0023434.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity