PI0023323 (gene) Melon (PI 482460) v1

Overview


Name	PI0023323
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotrans_gag domain-containing protein
Location	chr07: 12806155 .. 12806481 (-)
RNA-Seq Expression	PI0023323
Synteny	PI0023323

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCACCACGTACTAGCAGACGATGTAGGCAAAATCAGGACGGGATGCAAGATCCTACCGAGGGTCAGTTTGAAGGGGGTTCTAATACCCCAAGAGTTCAGACTGGGGTAGGAAATGAGCAGTTTGCTAGAGCTGCACAAGAGATAGGTAGGCCAGAGAGACCAGAGCCTAGTGACCCGAAAAAGATGTATGGAATAGAACGACTGAAGAAGTTGGGAGCCATAGTGTTTGAGGGTTCCACAAATCCAGTTGACGCTGAAGTTTGGTTGAATATGCTTGAGAAATGTTTTGATGTGATGAGTTGTCCCGAGGAACGGAAAGTCTGA

mRNA sequence

ATGCCACCACGTACTAGCAGACGATGTAGGCAAAATCAGGACGGGATGCAAGATCCTACCGAGGGTCAGTTTGAAGGGGGTTCTAATACCCCAAGAGTTCAGACTGGGGTAGGAAATGAGCAGTTTGCTAGAGCTGCACAAGAGATAGGTAGGCCAGAGAGACCAGAGCCTAGTGACCCGAAAAAGATGTATGGAATAGAACGACTGAAGAAGTTGGGAGCCATAGTGTTTGAGGGTTCCACAAATCCAGTTGACGCTGAAGTTTGGTTGAATATGCTTGAGAAATGTTTTGATGTGATGAGTTGTCCCGAGGAACGGAAAGTCTGA

Coding sequence (CDS)

ATGCCACCACGTACTAGCAGACGATGTAGGCAAAATCAGGACGGGATGCAAGATCCTACCGAGGGTCAGTTTGAAGGGGGTTCTAATACCCCAAGAGTTCAGACTGGGGTAGGAAATGAGCAGTTTGCTAGAGCTGCACAAGAGATAGGTAGGCCAGAGAGACCAGAGCCTAGTGACCCGAAAAAGATGTATGGAATAGAACGACTGAAGAAGTTGGGAGCCATAGTGTTTGAGGGTTCCACAAATCCAGTTGACGCTGAAGTTTGGTTGAATATGCTTGAGAAATGTTTTGATGTGATGAGTTGTCCCGAGGAACGGAAAGTCTGA

Protein sequence

MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDPKKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVMSCPEERKV

Homology

[Close]

BLAST of PI0023323 vs. ExPASy TrEMBL
Match: A0A5A7TQE9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1639G00390 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 7.1e-40
Identity = 84/108 (77.78%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDP 60
           MPPRTSRR RQNQDGMQ PT+GQ  G S+TPRVQ G GNE+FAR  QEIGRPER EPSDP
Sbjct: 1   MPPRTSRRRRQNQDGMQGPTQGQSVGESSTPRVQVGAGNERFARTGQEIGRPERAEPSDP 60

Query: 61  KKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVMSCPEERKV 109
           +K Y IE+LKKLGA VFEG T+P DAE WLNMLEKCFDVM+CPE+RKV
Sbjct: 61  EKAYIIEQLKKLGATVFEGFTDPADAENWLNMLEKCFDVMNCPEKRKV 108

[Close]

BLAST of PI0023323 vs. ExPASy TrEMBL
Match: A0A5D3BMJ4 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold264G00470 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.2e-40
Identity = 83/108 (76.85%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDP 60
           MPPRTSRR +QNQD  QDPT+GQ E GS+TPR Q   G+E+FAR+AQEIGRPER  PSDP
Sbjct: 105 MPPRTSRRHKQNQDETQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPERVGPSDP 164

Query: 61  KKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVMSCPEERKV 109
           +KMYGIERLKKLGA VFEGST+P +AEVWLNMLEKCFDVM+CP++RKV
Sbjct: 165 EKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKV 212

[Close]

BLAST of PI0023323 vs. ExPASy TrEMBL
Match: A0A5A7VHG2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2484G00160 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.2e-40
Identity = 84/108 (77.78%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 1   MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDP 60
           MPPRT RR +QNQDGMQ PT+G   G S T RVQ G GNEQFAR  QEIGRP+R EPSDP
Sbjct: 1   MPPRTGRRRQQNQDGMQGPTQGPSVGESTTLRVQGGAGNEQFARTTQEIGRPDRAEPSDP 60

Query: 61  KKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVMSCPEERKV 109
           KK YGIERLKKLGA V+EGST+P DAE WLNMLEKCFDVM+CPEERKV
Sbjct: 61  KKAYGIERLKKLGATVYEGSTDPADAENWLNMLEKCFDVMNCPEERKV 108

[Close]

BLAST of PI0023323 vs. ExPASy TrEMBL
Match: A0A1S3BJ07 (uncharacterized protein LOC103490604 OS=Cucumis melo OX=3656 GN=LOC103490604 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 9.2e-40
Identity = 83/108 (76.85%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDP 60
           MPPRTSRR +QNQD  QDPT+GQ E GS+TPR Q   G+E+FAR+AQEIGRPER  PSDP
Sbjct: 1   MPPRTSRRHKQNQDETQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPERVGPSDP 60

Query: 61  KKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVMSCPEERKV 109
           +KMYGIERLKKLGA VFEGST+P +AEVWLNMLEKCFDVM+CP++RKV
Sbjct: 61  EKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKV 108

[Close]

BLAST of PI0023323 vs. ExPASy TrEMBL
Match: A0A5A7UAH6 (CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00130 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.6e-39
Identity = 84/108 (77.78%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 1   MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDP 60
           MPPRTSRR RQNQDGMQ PT+GQ E GS+TPR Q  VG+E+FAR+AQEI RPER  PSD 
Sbjct: 179 MPPRTSRRRRQNQDGMQYPTQGQSERGSSTPRGQNEVGSERFARSAQEISRPERARPSDL 238

Query: 61  KKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVMSCPEERKV 109
            KMYGIE+LKKLGA VF+GST+P DAEVWLNMLEKCFDVMSCP+E+KV
Sbjct: 239 DKMYGIEQLKKLGATVFQGSTDPADAEVWLNMLEKCFDVMSCPQEQKV 286

[Close]

BLAST of PI0023323 vs. NCBI nr
Match: KAA0043429.1 (uncharacterized protein E6C27_scaffold1639G00390 [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 1.5e-39
Identity = 84/108 (77.78%), Postives = 92/108 (85.19%), Query Frame = 0


Query: 1   MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDP 60
           MPPRTSRR RQNQDGMQ PT+GQ  G S+TPRVQ G GNE+FAR  QEIGRPER EPSDP
Sbjct: 1   MPPRTSRRRRQNQDGMQGPTQGQSVGESSTPRVQVGAGNERFARTGQEIGRPERAEPSDP 60

Query: 61  KKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVMSCPEERKV 109
           +K Y IE+LKKLGA VFEG T+P DAE WLNMLEKCFDVM+CPE+RKV
Sbjct: 61  EKAYIIEQLKKLGATVFEGFTDPADAENWLNMLEKCFDVMNCPEKRKV 108

[Close]

BLAST of PI0023323 vs. NCBI nr
Match: KAA0067812.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 1.9e-39
Identity = 84/108 (77.78%), Postives = 90/108 (83.33%), Query Frame = 0


Query: 1   MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDP 60
           MPPRT RR +QNQDGMQ PT+G   G S T RVQ G GNEQFAR  QEIGRP+R EPSDP
Sbjct: 1   MPPRTGRRRQQNQDGMQGPTQGPSVGESTTLRVQGGAGNEQFARTTQEIGRPDRAEPSDP 60

Query: 61  KKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVMSCPEERKV 109
           KK YGIERLKKLGA V+EGST+P DAE WLNMLEKCFDVM+CPEERKV
Sbjct: 61  KKAYGIERLKKLGATVYEGSTDPADAENWLNMLEKCFDVMNCPEERKV 108

[Close]

BLAST of PI0023323 vs. NCBI nr
Match: XP_008448403.1 (PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo])

HSP 1 Score: 172.6 bits (436), Expect = 1.9e-39
Identity = 83/108 (76.85%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDP 60
           MPPRTSRR +QNQD  QDPT+GQ E GS+TPR Q   G+E+FAR+AQEIGRPER  PSDP
Sbjct: 1   MPPRTSRRHKQNQDETQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPERVGPSDP 60

Query: 61  KKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVMSCPEERKV 109
           +KMYGIERLKKLGA VFEGST+P +AEVWLNMLEKCFDVM+CP++RKV
Sbjct: 61  EKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKV 108

[Close]

BLAST of PI0023323 vs. NCBI nr
Match: TYK01041.1 (uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 1.9e-39
Identity = 83/108 (76.85%), Postives = 95/108 (87.96%), Query Frame = 0


Query: 1   MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDP 60
           MPPRTSRR +QNQD  QDPT+GQ E GS+TPR Q   G+E+FAR+AQEIGRPER  PSDP
Sbjct: 105 MPPRTSRRHKQNQDETQDPTQGQSERGSSTPRGQNEAGSERFARSAQEIGRPERVGPSDP 164

Query: 61  KKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVMSCPEERKV 109
           +KMYGIERLKKLGA VFEGST+P +AEVWLNMLEKCFDVM+CP++RKV
Sbjct: 165 EKMYGIERLKKLGATVFEGSTDPANAEVWLNMLEKCFDVMNCPQKRKV 212

[Close]

BLAST of PI0023323 vs. NCBI nr
Match: XP_016899851.1 (PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 3.3e-39
Identity = 84/108 (77.78%), Postives = 94/108 (87.04%), Query Frame = 0


Query: 1   MPPRTSRRCRQNQDGMQDPTEGQFEGGSNTPRVQTGVGNEQFARAAQEIGRPERPEPSDP 60
           MPPRTSRR RQNQDGMQ PT+GQ E GS+TPR Q  VG+E+FAR+AQEI RPER  PSD 
Sbjct: 1   MPPRTSRRRRQNQDGMQYPTQGQSERGSSTPRGQNEVGSERFARSAQEISRPERARPSDL 60

Query: 61  KKMYGIERLKKLGAIVFEGSTNPVDAEVWLNMLEKCFDVMSCPEERKV 109
            KMYGIE+LKKLGA VF+GST+P DAEVWLNMLEKCFDVMSCP+E+KV
Sbjct: 61  DKMYGIEQLKKLGATVFQGSTDPADAEVWLNMLEKCFDVMSCPQEQKV 108

The following BLAST results are available for this feature:

BLAST of PI0023323 vs.


Match Name	E-value	Identity	Description

BLAST of PI0023323 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TQE9	7.1e-40	77.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BMJ4	9.2e-40	76.85	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7VHG2	9.2e-40	77.78	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]
A0A1S3BJ07	9.2e-40	76.85	uncharacterized protein LOC103490604 OS=Cucumis melo OX=3656 GN=LOC103490604 PE=...	[more]
A0A5A7UAH6	1.6e-39	77.78	CCHC-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]

BLAST of PI0023323 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043429.1	1.5e-39	77.78	uncharacterized protein E6C27_scaffold1639G00390 [Cucumis melo var. makuwa]	[more]
KAA0067812.1	1.9e-39	77.78	reverse transcriptase [Cucumis melo var. makuwa]	[more]
XP_008448403.1	1.9e-39	76.85	PREDICTED: uncharacterized protein LOC103490604 [Cucumis melo]	[more]
TYK01041.1	1.9e-39	76.85	uncharacterized protein E5676_scaffold264G00470 [Cucumis melo var. makuwa]	[more]
XP_016899851.1	3.3e-39	77.78	PREDICTED: uncharacterized protein LOC103487680 [Cucumis melo]	[more]

BLAST of PI0023323 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..35

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023323.1	PI0023323.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0004519	endonuclease activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding