PI0023311 (gene) Melon (PI 482460) v1

Overview
NamePI0023311
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Description50S ribosomal protein L20, chloroplastic
Locationtig00003741: 44163 .. 44516 (-)
RNA-Seq ExpressionPI0023311
SyntenyPI0023311
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGATTCATACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAATAA

mRNA sequence

ATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGATTCATACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAATAA

Coding sequence (CDS)

ATGACTAGAATTAAACGAGGATATATAGCTCGGAGACGTAGAACAAAAATTCGTTTATTTGCATCAAGCTTTCGAGGGGCTCATTCAAGACTTACTCGAACTATTACTCAACAGAAAATAAGAGCTTTGGCTTCAGCTTATCGGGATAGAGGTAGGCAAAAAAGAAATTTTCGACAGTTGTGGATCGCTCGAATAAATGCAGTAATTCGATCTAATAAGGTAGACTACAGTTATAGTAGATTCATACACAATCTGTACAAGAGGCAGTTGCTTCTTAATCGTAAAATACTTGCCCAAATCGCTATATTAAATAGAAATTGTCTTTATATGATTTCCAATGAGATCATAAAATAA

Protein sequence

MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Homology
[Close]
BLAST of PI0023311 vs. ExPASy Swiss-Prot
Match: Q4VZJ4 (50S ribosomal protein L20, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 5.6e-56
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           WIARINAVIRSN VDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WIARINAVIRSNNVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of PI0023311 vs. ExPASy Swiss-Prot
Match: Q09G23 (50S ribosomal protein L20, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 7.9e-50
Identity = 104/117 (88.89%), Postives = 110/117 (94.02%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRI+RGYIARRRRTKIRLFAS+FRGAHSRLTRT TQQK+RAL SA+RDRGRQKRNFR+L
Sbjct: 1   MTRIRRGYIARRRRTKIRLFASTFRGAHSRLTRTTTQQKMRALVSAHRDRGRQKRNFRRL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           WI RINAVIR NKV YSYSR IH+LYKRQLLLNRKILAQIAI NRNCLYMISNEIIK
Sbjct: 61  WITRINAVIRENKVSYSYSRLIHDLYKRQLLLNRKILAQIAISNRNCLYMISNEIIK 117

[Close]
BLAST of PI0023311 vs. ExPASy Swiss-Prot
Match: Q09WZ4 (50S ribosomal protein L20, chloroplastic OS=Morus indica OX=248361 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 193.4 bits (490), Expect = 1.5e-48
Identity = 103/117 (88.03%), Postives = 111/117 (94.87%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSF+GA SRLTRTITQQKIRAL SA++DRGRQKR+FR+L
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFQGARSRLTRTITQQKIRALVSAHQDRGRQKRDFRRL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           WI RINAVIR+NKV YSYS  IH+LYKRQLLLNRKILAQIAILNRNCLYMISNEI+K
Sbjct: 61  WITRINAVIRANKVYYSYSTLIHHLYKRQLLLNRKILAQIAILNRNCLYMISNEILK 117

[Close]
BLAST of PI0023311 vs. ExPASy Swiss-Prot
Match: Q7FNS5 (50S ribosomal protein L20, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 4.3e-48
Identity = 103/117 (88.03%), Postives = 108/117 (92.31%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRAL SA+RDR R+KR+FR+L
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALVSAHRDRDRKKRDFRRL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           WI RINAVIR   V YSYSR IH+LYKRQLLLNRKILAQIAI NRNCLYMISNEIIK
Sbjct: 61  WITRINAVIRERGVSYSYSRLIHDLYKRQLLLNRKILAQIAISNRNCLYMISNEIIK 117

[Close]
BLAST of PI0023311 vs. ExPASy Swiss-Prot
Match: B1NWH3 (50S ribosomal protein L20, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 191.8 bits (486), Expect = 4.3e-48
Identity = 101/117 (86.32%), Postives = 109/117 (93.16%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRI+RGYIARRRRTKIRLFASSFRGAHSRLTRTI QQKIRAL SA+RDR RQKRNFR+L
Sbjct: 1   MTRIRRGYIARRRRTKIRLFASSFRGAHSRLTRTIIQQKIRALVSAHRDRDRQKRNFRRL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           W+ RINAVIR + V YSYSR I+NLYKRQLLLNRKILAQIAILNRNCLYMISN+I+K
Sbjct: 61  WVTRINAVIRESTVSYSYSRLINNLYKRQLLLNRKILAQIAILNRNCLYMISNDILK 117

[Close]
BLAST of PI0023311 vs. ExPASy TrEMBL
Match: A0A249RZK5 (50S ribosomal protein L20, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.5e-54
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of PI0023311 vs. ExPASy TrEMBL
Match: A0A1S4EU28 (50S ribosomal protein L20, chloroplastic OS=Cucumis melo OX=3656 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.5e-54
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of PI0023311 vs. ExPASy TrEMBL
Match: A0A2Z2CH93 (50S ribosomal protein L20, chloroplastic OS=Coccinia grandis OX=387127 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.5e-54
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of PI0023311 vs. ExPASy TrEMBL
Match: X2F1S9 (50S ribosomal protein L20, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.5e-54
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of PI0023311 vs. ExPASy TrEMBL
Match: A0A286NG26 (50S ribosomal protein L20, chloroplastic OS=Cucumis melo var. flexuosus OX=1120798 GN=rpl20 PE=3 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 5.5e-54
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of PI0023311 vs. NCBI nr
Match: YP_004841806.1 (ribosomal protein L20 [Cucumis melo subsp. melo] >YP_009860096.1 ribosomal protein L20 [Cucumis melo subsp. agrestis] >ASY96631.1 ribosomal protein L20 [Cucumis melo var. conomon] >ASY96719.1 ribosomal protein L20 [Cucumis melo var. makuwa] >ASY96806.1 ribosomal protein L20 [Cucumis melo var. momordica] >ASY96893.1 ribosomal protein L20 [Cucumis melo var. dudaim] >ASY96980.1 ribosomal protein L20 [Cucumis melo var. cantalupo] >ASY97154.1 ribosomal protein L20 [Cucumis melo var. inodorus] >ASY97328.1 ribosomal protein L20 [Cucumis melo var. flexuosus] >QJF46406.1 ribosomal protein L20 [Cucumis melo])

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of PI0023311 vs. NCBI nr
Match: YP_009317409.1 (ribosomal protein L20 [Coccinia grandis] >YP_009420817.1 ribosomal protein L20 [Citrullus colocynthis] >YP_009431665.1 ribosomal protein L20 [Citrullus rehmii] >YP_009456169.1 ribosomal protein L20 [Lagenaria siceraria] >YP_009752350.1 ribosomal protein L20 [Bryonia marmorata] >YP_010131117.1 ribosomal protein L20 [Benincasa hispida] >QHB75986.1 ribosomal protein L20 [Cucumis melo subsp. melo] >QNM38554.1 ribosomal protein L20 [Lagenaria siceraria var. microcarpa] >QZL38616.1 ribosomal protein L20 [Citrullus naudinianus] >AHM88712.1 ribosomal protein L20 [Lagenaria siceraria] >AHM88771.1 ribosomal protein L20 [Lagenaria siceraria])

HSP 1 Score: 219.9 bits (559), Expect = 1.1e-53
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of PI0023311 vs. NCBI nr
Match: YP_009326012.1 (ribosomal protein L20 [Citrullus lanatus] >YP_009348054.1 ribosomal protein L20 [Citrullus mucosospermus] >YP_009431580.1 ribosomal protein L20 [Citrullus amarus] >APW82484.1 ribosomal protein L20 [Citrullus lanatus subsp. vulgaris] >QZL38704.1 ribosomal protein L20 [Citrullus ecirrhosus] >APD52503.1 ribosomal protein L20 [Citrullus lanatus] >APW82569.1 ribosomal protein L20 [Citrullus lanatus subsp. vulgaris] >APW82654.1 ribosomal protein L20 [Citrullus lanatus subsp. vulgaris])

HSP 1 Score: 219.5 bits (558), Expect = 1.5e-53
Identity = 116/117 (99.15%), Postives = 117/117 (100.00%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           WIARINAVIRSNKVDYSYSRF+HNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WIARINAVIRSNKVDYSYSRFVHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of PI0023311 vs. NCBI nr
Match: AHM89948.1 (ribosomal protein L20 [Lagenaria siceraria] >AHM90184.1 ribosomal protein L20 [Lagenaria siceraria])

HSP 1 Score: 218.0 bits (554), Expect = 4.3e-53
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQK RALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKXRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of PI0023311 vs. NCBI nr
Match: YP_009004067.1 (ribosomal protein L20 [Cucumis hystrix] >YP_009346507.1 ribosomal protein L20 [Cucumis x hytivus] >YP_247622.1 ribosomal protein L20 [Cucumis sativus] >Q4VZJ4.1 RecName: Full=50S ribosomal protein L20, chloroplastic [Cucumis sativus] >ALF03324.1 ribosomal protein L20 [Cucumis sativus var. hardwickii] >AVE15354.1 ribosomal protein L20 [Cucumis sativus var. sativus] >AAZ94674.1 ribosomal protein L20 [Cucumis sativus] >ABI97440.1 ribosomal protein L20 [Cucumis sativus] >ABI98768.1 ribosomal protein L20 [Cucumis sativus])

HSP 1 Score: 218.0 bits (554), Expect = 4.3e-53
Identity = 116/117 (99.15%), Postives = 116/117 (99.15%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL
Sbjct: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           WIARINAVIRSN VDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK
Sbjct: 61  WIARINAVIRSNNVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 117

[Close]
BLAST of PI0023311 vs. TAIR 10
Match: ATCG00660.1 (ribosomal protein L20 )

HSP 1 Score: 179.9 bits (455), Expect = 1.2e-45
Identity = 94/117 (80.34%), Postives = 107/117 (91.45%), Query Frame = 0 

Query: 1   MTRIKRGYIARRRRTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQL 60
           MTRIKRGYIARRRRTK+RLFASSFRGAHSRLTRT+TQQ+IRAL SA+RDRG++KR+FR+L
Sbjct: 1   MTRIKRGYIARRRRTKLRLFASSFRGAHSRLTRTMTQQRIRALVSAHRDRGKRKRDFRRL 60

Query: 61  WIARINAVIRSNKVDYSYSRFIHNLYKRQLLLNRKILAQIAILNRNCLYMISNEIIK 118
           WI RINAVI    V YSY+ FIHNLYK+QLLLNRKILAQIA+LNR+CLY ISN+I K
Sbjct: 61  WITRINAVIHEMGVFYSYNEFIHNLYKKQLLLNRKILAQIALLNRSCLYTISNDIKK 117

[Close]
BLAST of PI0023311 vs. TAIR 10
Match: AT1G16740.1 (Ribosomal protein L20 )

HSP 1 Score: 58.5 bits (140), Expect = 4.1e-09
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 0 

Query: 14  RTKIRLFASSFRGAHSRLTRTITQQKIRALASAYRDRGRQKRNFRQLWIARINAVIRSNK 73
           + +I   A  FRG      R   ++  +AL  +YRDR  +KR  R LWI RINA  R + 
Sbjct: 3   KKEIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKREMRGLWIERINAGSRQHG 62

Query: 74  VDYSYSRFIHNLYKRQLLLNRKILAQIAI 103
           V  +Y  FIH L K  + LNRK+L+++++
Sbjct: 63  V--NYGNFIHGLMKENIQLNRKVLSELSM 89

The following BLAST results are available for this feature:
BLAST of PI0023311 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZJ45.6e-5699.1550S ribosomal protein L20, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl20 PE=... [more]
Q09G237.9e-5088.8950S ribosomal protein L20, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl... [more]
Q09WZ41.5e-4888.0350S ribosomal protein L20, chloroplastic OS=Morus indica OX=248361 GN=rpl20 PE=3... [more]
Q7FNS54.3e-4888.0350S ribosomal protein L20, chloroplastic OS=Atropa belladonna OX=33113 GN=rpl20 ... [more]
B1NWH34.3e-4886.3250S ribosomal protein L20, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl20 P... [more]
BLAST of PI0023311 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A249RZK55.5e-54100.0050S ribosomal protein L20, chloroplastic OS=Cucumis melo var. cantalupensis OX=3... [more]
A0A1S4EU285.5e-54100.0050S ribosomal protein L20, chloroplastic OS=Cucumis melo OX=3656 GN=rpl20 PE=3 S... [more]
A0A2Z2CH935.5e-54100.0050S ribosomal protein L20, chloroplastic OS=Coccinia grandis OX=387127 GN=rpl20 ... [more]
X2F1S95.5e-54100.0050S ribosomal protein L20, chloroplastic OS=Lagenaria siceraria OX=3668 GN=rpl20... [more]
A0A286NG265.5e-54100.0050S ribosomal protein L20, chloroplastic OS=Cucumis melo var. flexuosus OX=11207... [more]
BLAST of PI0023311 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_004841806.11.1e-53100.00ribosomal protein L20 [Cucumis melo subsp. melo] >YP_009860096.1 ribosomal prote... [more]
YP_009317409.11.1e-53100.00ribosomal protein L20 [Coccinia grandis] >YP_009420817.1 ribosomal protein L20 [... [more]
YP_009326012.11.5e-5399.15ribosomal protein L20 [Citrullus lanatus] >YP_009348054.1 ribosomal protein L20 ... [more]
AHM89948.14.3e-5399.15ribosomal protein L20 [Lagenaria siceraria] >AHM90184.1 ribosomal protein L20 [L... [more]
YP_009004067.14.3e-5399.15ribosomal protein L20 [Cucumis hystrix] >YP_009346507.1 ribosomal protein L20 [C... [more]
BLAST of PI0023311 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00660.11.2e-4580.34ribosomal protein L20 [more]
AT1G16740.14.1e-0939.33Ribosomal protein L20 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005813Ribosomal protein L20PRINTSPR00062RIBOSOMALL20coord: 42..71
score: 57.37
coord: 77..103
score: 52.86
coord: 12..41
score: 42.32
IPR005813Ribosomal protein L20PFAMPF00453Ribosomal_L20coord: 3..108
e-value: 3.6E-33
score: 113.9
IPR005813Ribosomal protein L20TIGRFAMTIGR01032TIGR01032coord: 1..113
e-value: 3.8E-28
score: 96.0
IPR005813Ribosomal protein L20PANTHERPTHR1098639S RIBOSOMAL PROTEIN L20coord: 1..115
IPR005813Ribosomal protein L20PROSITEPS00937RIBOSOMAL_L20coord: 54..70
IPR005813Ribosomal protein L20HAMAPMF_00382Ribosomal_L20coord: 2..117
score: 24.864826
IPR005813Ribosomal protein L20CDDcd07026Ribosomal_L20coord: 6..113
e-value: 6.57225E-37
score: 119.126
NoneNo IPR availableGENE3D6.10.160.10coord: 3..55
e-value: 3.1E-12
score: 48.4
NoneNo IPR availablePANTHERPTHR10986:SF1239S RIBOSOMAL PROTEIN L20, MITOCHONDRIALcoord: 1..115
IPR035566Ribosomal protein L20, C-terminalGENE3D1.10.1900.20Ribosomal protein L20coord: 56..117
e-value: 1.4E-20
score: 74.6
IPR035566Ribosomal protein L20, C-terminalSUPERFAMILY74731Ribosomal protein L20coord: 2..116

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0023311.1PI0023311.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000027 ribosomal large subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome