PI0023310 (gene) Melon (PI 482460) v1

Overview
NamePI0023310
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
Descriptioncytochrome c oxidase-assembly factor COX23, mitochondrial
Locationchr06: 2377952 .. 2380740 (-)
RNA-Seq ExpressionPI0023310
SyntenyPI0023310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAAGAAAAAATAATCGGTCGGGTTGGACCGGATTGAATCGGCTTGATACAAATAACTATAAATGGAGATTGATTCGCTTGCCCTCTCATCGGAATATCAGGGAGTCATTTTAACCGACCTCTATTTTCCGCCAATACAGAGTGTGCTTTTCCGCCATGGCTTCCACTTCTAGGGATCCAACTCTGCCGTACACCAGTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTATAGCGCTTCCCTCAAATGTACTTTCACTCTCATACTCCCTCTCCGTTATTCTCATTTTTGGTTTATCTATAATTCTCCGCCAGAAATTTAGGTATCTGTGCTACTGTTATCTCACTATTTGATTTTGGACTTGTTCTACACTGGTTCATTTGAGATTGATTGGGTGCTGTGCATCAATTGTTTTCAGTTTGTGTTTTTTATGGTTAAACTCGCGAATCTGTAGTTGGCGATGATCGTGCGAACTCTAATTTTTGTGGCGATTCTCTGTGCTCTGTTACTTGAAAATTGGCTAGCCTGTTTTATTACTTTTCTAGGGTTTCTATTTCCATCCAGTTTAGGTTAATTGATAAAGAGTAAGCAAACTTAAATAAATGTATTAGTGATCGTACGATAATCTTAAAACCAAAATAGGATTTACCAGGGTATTACTTAATAAAACGCTCGTCGGAGTTCTTAGAGTGGCTGTGTTTTGAGTCTACTTACTGTTCTTACTAATAACTATGGCAATGGTGAAAAAGGAACTTTTACTAGGATTTTGGAGCCGAATGATCATAATCCCCCTTTCCGTGGGGCCAAGTGTTATAGTAGGAATTACTAAGGTGGATGGTTCTTCTACTCCAAAACTAGTTAGTTGTCAATCCGATCCAATTTCATTATTTGGCTTATTCTTTGAGCTATATTTATAAGAGGGTTTTAACTTTCTGGACATCCCTCTGTGTATTTGACATAACCCCACATATGGACAAAATAATTTTTAAAAAGATGTTTAATGCAGAAGCCTCGAGCTGCAACTTAAGGCAAGGATAAAGGTCATATACAAATCGTTTTATAGGAAGCATGCGTTGGTAATGGATGTTAAGTCATGTGTAAAGTGAACTTGTTTTTTGAATTCTTAAATGTGGACTATCGTTATTGATTCTGTTAAAGTGCAGCTTATCTTTGGTGTTTCATGAACCATCCAAATGAGAAGTTGGTGCTTAGATTACTAATTTTTGTAGATTTGGAATTTTATTTTTATGTCAGAGGACATTTTGAACTTCTTATCAGAGAAATTTTCCTTTTCCAAATGTTATAGGTCTTGAAGTACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGGTATTTTCTTCTCTTAGTTATCACATGAAATTGGAATGGTGAAACGTTTCGTAGCATGTGGTATTGTTACTGAAAACATATGCTCACTATTTATGGGGATTTGACTTTTGAGATGATGGTACTGACTAACAAAGGTTGTAATTGCAAATGAGCAGATCCCAAAGAGGCATCAAAATGTTAAAATATGATCTTGGTCTTCAGTAAAAGTTATATTTAATTTCTTAAGTTTTAGTAATTTCTATGTCACATATTCTATCCTAGTTAAAATCTGTAATGAAAAAGTGACTAGTCATTTCGTGATACCAGATTTATATGCAAGTGATGTATTGCATGTCTAATATTGTCTCTTCCATGTGATAACCTCTTATTAGTTATACGTTGATCGGCCACAAAATAGAATACTGTATTAATCGTAGATTGAATTTGAAATTATTGAAGCTTGAGGGTCTAAAATATAAACTTTTTGGAAATTTGGGATTTAACTTCAAGAATTAAAAGTACTCTATGACCTGAAAGATACTATGGCATATAAGATGAGAAATATTATTGTGATTCATAATACTATAGAAAGTTTAGAACCCTCTGCCTATGTTCCATTACATTTACTTCCTTGGTTGGTGTAGTAGAGTAGCATCATGCACCAATTCTTGGTCAGATGTTGTCTCTGTTTATGAAGTTTCTAACTCAGAACGAGATGTGTCTTCTTTCCAGCGGGAAGCTCGATTGGAACGCAACAAGACGCGGTCTTTCTTCTCATGAAATTATCTTCAGGCATGTTTCTTGATGTTAAAGTATGTATGTTTTTTATGCAATCTACACTCATTTATTAATCTTCTTGTAGATTTCTCTGGTGCTCATCAAGACGACAACTCAGCATGTATTCCCCACTTACTATTAGTCATCTATTGATAAATTCTTACAGAGTTTTTACATTTCTACAATGAAAATTGATCCTCAATTTGATCTAAATAGTGCAAGCTTCAAGAATTACACGGCAGTTAAAAAGTATCTATTTCCTTTTAAAGAGACTGTAAGTTAAAACCTCCAATGTTATATGATAAAATGTTCTATTAAGTTGATCCTGGATGATTGCTCGACCCTTTCAAATTTTTAGGCTAATGATTTGAGTCTTATTTGATAGGTTATTGGTTATATATATATATACTTGAATTCAACAAGTGGAAATAAGAACTCAAACCTACCACCACTTTATATTCTACTCGATGATGATTATTGATTGCATATGACTTGAAATTGAACTTCATGTTCATTTGGTGAATAATTCTATGAAATGTCTACCCACACTTTTAGGGTTTTTTTTAAAACTTAGGAATGTTTAGGATTATGTTGCGTAGGCTATTTTACCTCATGTACTAAAAGAGGAAAATTGTCCAACAAA

mRNA sequence

AAAAAAGAAAAAATAATCGGTCGGGTTGGACCGGATTGAATCGGCTTGATACAAATAACTATAAATGGAGATTGATTCGCTTGCCCTCTCATCGGAATATCAGGGAGTCATTTTAACCGACCTCTATTTTCCGCCAATACAGAGTGTGCTTTTCCGCCATGGCTTCCACTTCTAGGGATCCAACTCTGCCGTACACCAGTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTATAGCGCTTCCCTCAAATGTCTTGAAGTACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGCGGGAAGCTCGATTGGAACGCAACAAGACGCGGTCTTTCTTCTCATGAAATTATCTTCAGGCATGTTTCTTGATGTTAAAGTATGTATGTTTTTTATGCAATCTACACTCATTTATTAATCTTCTTGTAGATTTCTCTGGTGCTCATCAAGACGACAACTCAGCATGTATTCCCCACTTACTATTAGTCATCTATTGATAAATTCTTACAGAGTTTTTACATTTCTACAATGAAAATTGATCCTCAATTTGATCTAAATAGTGCAAGCTTCAAGAATTACACGGCAGTTAAAAAGTATCTATTTCCTTTTAAAGAGACTGTAAGTTAAAACCTCCAATGTTATATGATAAAATGTTCTATTAAGTTGATCCTGGATGATTGCTCGACCCTTTCAAATTTTTAGGCTAATGATTTGAGTCTTATTTGATAGGTTATTGGTTATATATATATATACTTGAATTCAACAAGTGGAAATAAGAACTCAAACCTACCACCACTTTATATTCTACTCGATGATGATTATTGATTGCATATGACTTGAAATTGAACTTCATGTTCATTTGGTGAATAATTCTATGAAATGTCTACCCACACTTTTAGGGTTTTTTTTAAAACTTAGGAATGTTTAGGATTATGTTGCGTAGGCTATTTTACCTCATGTACTAAAAGAGGAAAATTGTCCAACAAA

Coding sequence (CDS)

ATGGCTTCCACTTCTAGGGATCCAACTCTGCCGTACACCAGTGCTGCTAGAATTTCCGATTCTCCTTGTTATCCTCAGTATAGCGCTTCCCTCAAATGTCTTGAAGTACATAGCTCAGAGAAGAGCAAATGTCAAGAACATTTTGATGTTTACAAGGAATGCAAGAAGAAAGAGCGGGAAGCTCGATTGGAACGCAACAAGACGCGGTCTTTCTTCTCATGA

Protein sequence

MASTSRDPTLPYTSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLERNKTRSFFS
Homology
BLAST of PI0023310 vs. ExPASy Swiss-Prot
Match: Q6FQX5 (Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=COX23 PE=3 SV=1)

HSP 1 Score: 43.9 bits (102), Expect = 9.1e-04
Identity = 19/41 (46.34%), Postives = 28/41 (68.29%), Query Frame = 0

Query: 22  PCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREAR 63
           PC      S KCLE++  ++ +C+E+FD Y+ECKK+  EAR
Sbjct: 63  PCQESAKMSFKCLELNDYDRDQCKEYFDAYRECKKQWLEAR 103

BLAST of PI0023310 vs. ExPASy TrEMBL
Match: A0A0A0L4K5 (CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G129550 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.6e-30
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 0

Query: 1  MASTSRDPTLPYTSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDPT PY SAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERNKTRSFFS
Sbjct: 61 ARLERNKTRSFFS 73

BLAST of PI0023310 vs. ExPASy TrEMBL
Match: A0A5A7U004 (Cytochrome c oxidase-assembly factor COX23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G003050 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 5.0e-29
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 0

Query: 1  MASTSRDPTLPYTSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDP  PY SAARISDSPCYPQYSASLKCLEV+SSEKSKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERNKTRSFFS
Sbjct: 61 ARLERNKTRSFFS 73

BLAST of PI0023310 vs. ExPASy TrEMBL
Match: A0A6J1E9H8 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita moschata OX=3662 GN=LOC111432060 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.2e-27
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 0

Query: 1  MASTSRDPTLPYTSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDP+ PY SAARISDSPC+PQYSASLKCLE HSSE+SKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPSPPYPSAARISDSPCFPQYSASLKCLEEHSSERSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERNK RSFFS
Sbjct: 61 ARLERNKKRSFFS 73

BLAST of PI0023310 vs. ExPASy TrEMBL
Match: A0A6J1D157 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Momordica charantia OX=3673 GN=LOC111016071 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 1.8e-26
Identity = 64/73 (87.67%), Postives = 67/73 (91.78%), Query Frame = 0

Query: 1  MASTSRDPTLPYTSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MAST+RD   PY SAARISDSPCYPQYSASLKCLE HSSEK+KCQEHFDVYKECKKKERE
Sbjct: 1  MASTTRDSAPPYASAARISDSPCYPQYSASLKCLEEHSSEKNKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERN+ RSFFS
Sbjct: 61 ARLERNRKRSFFS 73

BLAST of PI0023310 vs. ExPASy TrEMBL
Match: A0A6J1ITM4 (cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita maxima OX=3661 GN=LOC111479820 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 3.0e-26
Identity = 65/73 (89.04%), Postives = 67/73 (91.78%), Query Frame = 0

Query: 1  MASTSRDPTLPYTSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDP  PY SAARISDSPC+ QYSASLKCLE HSSE+SKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPPPPYPSAARISDSPCFLQYSASLKCLEEHSSERSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERNK RSFFS
Sbjct: 61 ARLERNKKRSFFS 73

BLAST of PI0023310 vs. NCBI nr
Match: XP_004133972.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus] >KGN56698.1 hypothetical protein Csa_009870 [Cucumis sativus])

HSP 1 Score: 140.6 bits (353), Expect = 5.4e-30
Identity = 71/73 (97.26%), Postives = 71/73 (97.26%), Query Frame = 0

Query: 1  MASTSRDPTLPYTSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDPT PY SAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPTPPYPSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERNKTRSFFS
Sbjct: 61 ARLERNKTRSFFS 73

BLAST of PI0023310 vs. NCBI nr
Match: KAA0049122.1 (cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa] >TYK17441.1 cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa])

HSP 1 Score: 136.3 bits (342), Expect = 1.0e-28
Identity = 69/73 (94.52%), Postives = 70/73 (95.89%), Query Frame = 0

Query: 1  MASTSRDPTLPYTSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDP  PY SAARISDSPCYPQYSASLKCLEV+SSEKSKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEVNSSEKSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERNKTRSFFS
Sbjct: 61 ARLERNKTRSFFS 73

BLAST of PI0023310 vs. NCBI nr
Match: XP_022924627.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita moschata] >KAG6582500.1 hypothetical protein SDJN03_22502, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018885.1 hypothetical protein SDJN02_20758 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.7 bits (330), Expect = 2.5e-27
Identity = 66/73 (90.41%), Postives = 69/73 (94.52%), Query Frame = 0

Query: 1  MASTSRDPTLPYTSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDP+ PY SAARISDSPC+PQYSASLKCLE HSSE+SKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPSPPYPSAARISDSPCFPQYSASLKCLEEHSSERSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERNK RSFFS
Sbjct: 61 ARLERNKKRSFFS 73

BLAST of PI0023310 vs. NCBI nr
Match: XP_038906947.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Benincasa hispida])

HSP 1 Score: 131.0 bits (328), Expect = 4.3e-27
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 0

Query: 1  MASTSRDPTLPYTSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDP  PY SAARISDSPCYPQYSASLKCLE H+SEKSKC+EHFDVYKECKKKERE
Sbjct: 1  MASTSRDPAPPYASAARISDSPCYPQYSASLKCLEEHNSEKSKCREHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERN+ RSFFS
Sbjct: 61 ARLERNRNRSFFS 73

BLAST of PI0023310 vs. NCBI nr
Match: XP_023527834.1 (cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.9 bits (320), Expect = 3.6e-26
Identity = 65/73 (89.04%), Postives = 68/73 (93.15%), Query Frame = 0

Query: 1  MASTSRDPTLPYTSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKERE 60
          MASTSRDP+ PY SAARISDSPC+ QYSASLKCLE HSSE+SKCQEHFDVYKECKKKERE
Sbjct: 1  MASTSRDPSPPYPSAARISDSPCFLQYSASLKCLEEHSSERSKCQEHFDVYKECKKKERE 60

Query: 61 ARLERNKTRSFFS 74
          ARLERNK RSFFS
Sbjct: 61 ARLERNKKRSFFS 73

BLAST of PI0023310 vs. TAIR 10
Match: AT1G02160.1 (Cox19 family protein (CHCH motif) )

HSP 1 Score: 107.1 bits (266), Expect = 6.2e-24
Identity = 54/62 (87.10%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 12 YTSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKEREARLERNKTRSF 71
          Y SAARISDSPCY QYSASLKCLE   S+KSKCQ+HFDVYKECKKKEREARLERNKTRS 
Sbjct: 10 YPSAARISDSPCYLQYSASLKCLEEFGSDKSKCQDHFDVYKECKKKEREARLERNKTRSL 69

Query: 72 FS 74
          FS
Sbjct: 70 FS 71

BLAST of PI0023310 vs. TAIR 10
Match: AT1G02160.2 (Cox19 family protein (CHCH motif) )

HSP 1 Score: 82.4 bits (202), Expect = 1.6e-16
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0

Query: 12 YTSAARISDSPCYPQYSASLKCLEVHSSEKSKCQEHFDVYKECKKKE 59
          Y SAARISDSPCY QYSASLKCLE   S+KSKCQ+HFDVYKECKKKE
Sbjct: 10 YPSAARISDSPCYLQYSASLKCLEEFGSDKSKCQDHFDVYKECKKKE 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q6FQX59.1e-0446.34Cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Candida glabrata (s... [more]
Match NameE-valueIdentityDescription
A0A0A0L4K52.6e-3097.26CHCH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G129550 PE=4 S... [more]
A0A5A7U0045.0e-2994.52Cytochrome c oxidase-assembly factor COX23 OS=Cucumis melo var. makuwa OX=119469... [more]
A0A6J1E9H81.2e-2790.41cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita moschata ... [more]
A0A6J1D1571.8e-2687.67cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Momordica charantia... [more]
A0A6J1ITM43.0e-2689.04cytochrome c oxidase-assembly factor COX23, mitochondrial OS=Cucurbita maxima OX... [more]
Match NameE-valueIdentityDescription
XP_004133972.15.4e-3097.26cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucumis sativus] >KGN... [more]
KAA0049122.11.0e-2894.52cytochrome c oxidase-assembly factor COX23 [Cucumis melo var. makuwa] >TYK17441.... [more]
XP_022924627.12.5e-2790.41cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita moschata] >... [more]
XP_038906947.14.3e-2789.04cytochrome c oxidase-assembly factor COX23, mitochondrial [Benincasa hispida][more]
XP_023527834.13.6e-2689.04cytochrome c oxidase-assembly factor COX23, mitochondrial [Cucurbita pepo subsp.... [more]
Match NameE-valueIdentityDescription
AT1G02160.16.2e-2487.10Cox19 family protein (CHCH motif) [more]
AT1G02160.21.6e-1685.11Cox19 family protein (CHCH motif) [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR010625CHCHPFAMPF06747CHCHcoord: 23..57
e-value: 1.9E-8
score: 34.2
NoneNo IPR availablePANTHERPTHR48150CYTOCHROME C OXIDASE-ASSEMBLY FACTOR COX23, MITOCHONDRIALcoord: 3..73
NoneNo IPR availablePROSITEPS51808CHCHcoord: 20..62
score: 14.734808
IPR009069Cysteine alpha-hairpin motif superfamilySUPERFAMILY47072Cysteine alpha-hairpin motifcoord: 21..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0023310.2PI0023310.2mRNA