PI0023298 (gene) Melon (PI 482460) v1

Overview


Name	PI0023298
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ty3-gypsy retrotransposon protein
Location	chr11: 7471274 .. 7471702 (+)
RNA-Seq Expression	PI0023298
Synteny	PI0023298

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACACCAAAGAAAGCCACATCTAAAGCTACCATCGCAAACGACGCTTACACTAGACCTGTAACCCAGGGTAACTCAAAGAGAATCATGCATGAACAAGAATATGGTTTTGTCCTTACAAAGAAAAGCTATAAACAATTGATGGAATCTCCTAAAGGCGAGATCGTCATCAGAGAGAATCCTTTGTTTGACAACTTTGCTCCTACTTTTGATATATCAGAGAGAAAATCACACCTTGAAGTAGTGTCTGTCATGATGGTAGATATAAAAACTGAGGCAACCATGGCAGAGATGGAGAGGAAATTAAATCTCCTAATGAAAGCGGTTGAGGAGCGAGATCATGAAATCAGTGCCTTGAGAGATCAAATGAAGGCTTGTAAAACTGCTGAGTCGAGTCAAACTTTTGCTGTCAAAGCTAACGATAAATGA

mRNA sequence

ATGACACCAAAGAAAGCCACATCTAAAGCTACCATCGCAAACGACGCTTACACTAGACCTGTAACCCAGGGTAACTCAAAGAGAATCATGCATGAACAAGAATATGGTTTTGTCCTTACAAAGAAAAGCTATAAACAATTGATGGAATCTCCTAAAGGCGAGATCGTCATCAGAGAGAATCCTTTGTTTGACAACTTTGCTCCTACTTTTGATATATCAGAGAGAAAATCACACCTTGAAGTAGTGTCTGTCATGATGGTAGATATAAAAACTGAGGCAACCATGGCAGAGATGGAGAGGAAATTAAATCTCCTAATGAAAGCGGTTGAGGAGCGAGATCATGAAATCAGTGCCTTGAGAGATCAAATGAAGGCTTGTAAAACTGCTGAGTCGAGTCAAACTTTTGCTGTCAAAGCTAACGATAAATGA

Coding sequence (CDS)

ATGACACCAAAGAAAGCCACATCTAAAGCTACCATCGCAAACGACGCTTACACTAGACCTGTAACCCAGGGTAACTCAAAGAGAATCATGCATGAACAAGAATATGGTTTTGTCCTTACAAAGAAAAGCTATAAACAATTGATGGAATCTCCTAAAGGCGAGATCGTCATCAGAGAGAATCCTTTGTTTGACAACTTTGCTCCTACTTTTGATATATCAGAGAGAAAATCACACCTTGAAGTAGTGTCTGTCATGATGGTAGATATAAAAACTGAGGCAACCATGGCAGAGATGGAGAGGAAATTAAATCTCCTAATGAAAGCGGTTGAGGAGCGAGATCATGAAATCAGTGCCTTGAGAGATCAAATGAAGGCTTGTAAAACTGCTGAGTCGAGTCAAACTTTTGCTGTCAAAGCTAACGATAAATGA

Protein sequence

MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIRENPLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMERKLNLLMKAVEERDHEISALRDQMKACKTAESSQTFAVKANDK

Homology

[Close]

BLAST of PI0023298 vs. ExPASy TrEMBL
Match: A0A5A7SU65 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00940 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.4e-42
Identity = 95/142 (66.90%), Postives = 116/142 (81.69%), Query Frame = 0


Query: 1   MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIREN 60
           M  K A SK++ A+D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKGEI+IR+N
Sbjct: 1   MASKNAASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGEIIIRDN 60

Query: 61  PLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMERKLNLLMKAVEERDHEISALR 120
           PLF+N  P  ++S+++SHLEVVSVMMVD+  EATMA+MERK+N LMK VEERDHEI+AL+
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVMMVDVTAEATMAKMERKINFLMKVVEERDHEIAALK 120

Query: 121 DQMKACKTAESSQTFAVKANDK 143
           DQMKAC+TAESSQT  VKA DK
Sbjct: 121 DQMKACETAESSQTPVVKATDK 142

[Close]

BLAST of PI0023298 vs. ExPASy TrEMBL
Match: A0A5A7SSD3 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold701G00230 PE=4 SV=1)

HSP 1 Score: 180.3 bits (456), Expect = 5.8e-42
Identity = 95/142 (66.90%), Postives = 116/142 (81.69%), Query Frame = 0


Query: 1   MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIREN 60
           MT  KA SK++ A+D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKG I+IR+N
Sbjct: 1   MTTNKAASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGGIIIRDN 60

Query: 61  PLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMERKLNLLMKAVEERDHEISALR 120
           PLF+N  P  ++S+++SHLEVVSVMMVD+  EATMA+MERK+N LMK VEERDHEI+AL+
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVMMVDVAAEATMAKMERKINFLMKVVEERDHEIAALK 120

Query: 121 DQMKACKTAESSQTFAVKANDK 143
           DQMKAC+TAESSQT  VKA DK
Sbjct: 121 DQMKACETAESSQTPVVKATDK 142

[Close]

BLAST of PI0023298 vs. ExPASy TrEMBL
Match: A0A5A7SRE2 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold452G00210 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 9.9e-42
Identity = 95/142 (66.90%), Postives = 115/142 (80.99%), Query Frame = 0


Query: 1   MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIREN 60
           MT  KA SK++  +D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKG IVIR+N
Sbjct: 1   MTTNKAASKSSAVSDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGGIVIRDN 60

Query: 61  PLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMERKLNLLMKAVEERDHEISALR 120
           PLF+N  P  ++S+++SHLEVVSVMMVD+  EATMAEMERK+N LMK VEERDHEI+AL+
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVMMVDVTAEATMAEMERKINFLMKVVEERDHEIAALK 120

Query: 121 DQMKACKTAESSQTFAVKANDK 143
           DQMKAC+T+ESSQT  VKA DK
Sbjct: 121 DQMKACETSESSQTPVVKATDK 142

[Close]

BLAST of PI0023298 vs. ExPASy TrEMBL
Match: A0A5D3CX82 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G003000 PE=4 SV=1)

HSP 1 Score: 177.9 bits (450), Expect = 2.9e-41
Identity = 94/142 (66.20%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 1   MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIREN 60
           M   KA SK++ A+D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKG I+IR+N
Sbjct: 1   MATNKAASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGGIIIRDN 60

Query: 61  PLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMERKLNLLMKAVEERDHEISALR 120
           PLFDN  P  ++S+++SHLEVVSVMMVD+  EATMAEMERK+N LMK VEERDHEI+AL+
Sbjct: 61  PLFDNSTPASNLSDKESHLEVVSVMMVDVTAEATMAEMERKINFLMKVVEERDHEIAALK 120

Query: 121 DQMKACKTAESSQTFAVKANDK 143
           DQMKAC+T E SQT  VKA DK
Sbjct: 121 DQMKACETGELSQTPVVKATDK 142

[Close]

BLAST of PI0023298 vs. ExPASy TrEMBL
Match: A0A5A7TS57 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G002840 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 1.1e-40
Identity = 93/142 (65.49%), Postives = 112/142 (78.87%), Query Frame = 0


Query: 1   MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIREN 60
           M   KA SK++ A+D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKG I+IR+N
Sbjct: 1   MATNKAASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGGIIIRDN 60

Query: 61  PLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMERKLNLLMKAVEERDHEISALR 120
           PLFDN  P  ++S+++SHLEVVSVMMVD+  EATMAEMERK+N LMK VEERDHEI+AL+
Sbjct: 61  PLFDNSTPASNLSDKESHLEVVSVMMVDVTAEATMAEMERKINFLMKVVEERDHEIAALK 120

Query: 121 DQMKACKTAESSQTFAVKANDK 143
           DQMKAC+T E SQ   VKA DK
Sbjct: 121 DQMKACETGELSQAPVVKATDK 142

[Close]

BLAST of PI0023298 vs. NCBI nr
Match: KAA0033526.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ95662.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 181.0 bits (458), Expect = 7.1e-42
Identity = 95/142 (66.90%), Postives = 116/142 (81.69%), Query Frame = 0


Query: 1   MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIREN 60
           M  K A SK++ A+D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKGEI+IR+N
Sbjct: 1   MASKNAASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGEIIIRDN 60

Query: 61  PLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMERKLNLLMKAVEERDHEISALR 120
           PLF+N  P  ++S+++SHLEVVSVMMVD+  EATMA+MERK+N LMK VEERDHEI+AL+
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVMMVDVTAEATMAKMERKINFLMKVVEERDHEIAALK 120

Query: 121 DQMKACKTAESSQTFAVKANDK 143
           DQMKAC+TAESSQT  VKA DK
Sbjct: 121 DQMKACETAESSQTPVVKATDK 142

[Close]

BLAST of PI0023298 vs. NCBI nr
Match: KAA0032461.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ99906.1 retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 180.3 bits (456), Expect = 1.2e-41
Identity = 95/142 (66.90%), Postives = 116/142 (81.69%), Query Frame = 0


Query: 1   MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIREN 60
           MT  KA SK++ A+D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKG I+IR+N
Sbjct: 1   MTTNKAASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGGIIIRDN 60

Query: 61  PLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMERKLNLLMKAVEERDHEISALR 120
           PLF+N  P  ++S+++SHLEVVSVMMVD+  EATMA+MERK+N LMK VEERDHEI+AL+
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVMMVDVAAEATMAKMERKINFLMKVVEERDHEIAALK 120

Query: 121 DQMKACKTAESSQTFAVKANDK 143
           DQMKAC+TAESSQT  VKA DK
Sbjct: 121 DQMKACETAESSQTPVVKATDK 142

[Close]

BLAST of PI0023298 vs. NCBI nr
Match: KAA0032121.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.5 bits (454), Expect = 2.1e-41
Identity = 95/142 (66.90%), Postives = 115/142 (80.99%), Query Frame = 0


Query: 1   MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIREN 60
           MT  KA SK++  +D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKG IVIR+N
Sbjct: 1   MTTNKAASKSSAVSDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGGIVIRDN 60

Query: 61  PLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMERKLNLLMKAVEERDHEISALR 120
           PLF+N  P  ++S+++SHLEVVSVMMVD+  EATMAEMERK+N LMK VEERDHEI+AL+
Sbjct: 61  PLFNNSTPASNLSDKESHLEVVSVMMVDVTAEATMAEMERKINFLMKVVEERDHEIAALK 120

Query: 121 DQMKACKTAESSQTFAVKANDK 143
           DQMKAC+T+ESSQT  VKA DK
Sbjct: 121 DQMKACETSESSQTPVVKATDK 142

[Close]

BLAST of PI0023298 vs. NCBI nr
Match: TYK16493.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 177.9 bits (450), Expect = 6.0e-41
Identity = 94/142 (66.20%), Postives = 113/142 (79.58%), Query Frame = 0


Query: 1   MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIREN 60
           M   KA SK++ A+D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKG I+IR+N
Sbjct: 1   MATNKAASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGGIIIRDN 60

Query: 61  PLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMERKLNLLMKAVEERDHEISALR 120
           PLFDN  P  ++S+++SHLEVVSVMMVD+  EATMAEMERK+N LMK VEERDHEI+AL+
Sbjct: 61  PLFDNSTPASNLSDKESHLEVVSVMMVDVTAEATMAEMERKINFLMKVVEERDHEIAALK 120

Query: 121 DQMKACKTAESSQTFAVKANDK 143
           DQMKAC+T E SQT  VKA DK
Sbjct: 121 DQMKACETGELSQTPVVKATDK 142

[Close]

BLAST of PI0023298 vs. NCBI nr
Match: KAA0044976.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 176.0 bits (445), Expect = 2.3e-40
Identity = 93/142 (65.49%), Postives = 112/142 (78.87%), Query Frame = 0


Query: 1   MTPKKATSKATIANDAYTRPVTQGNSKRIMHEQEYGFVLTKKSYKQLMESPKGEIVIREN 60
           M   KA SK++ A+D+Y   VTQ + KR M EQE GFVL KKS +QL+ESPKG I+IR+N
Sbjct: 1   MATNKAASKSSAASDSYIGLVTQSHLKRSMQEQEQGFVLKKKSLEQLIESPKGGIIIRDN 60

Query: 61  PLFDNFAPTFDISERKSHLEVVSVMMVDIKTEATMAEMERKLNLLMKAVEERDHEISALR 120
           PLFDN  P  ++S+++SHLEVVSVMMVD+  EATMAEMERK+N LMK VEERDHEI+AL+
Sbjct: 61  PLFDNSTPASNLSDKESHLEVVSVMMVDVTAEATMAEMERKINFLMKVVEERDHEIAALK 120

Query: 121 DQMKACKTAESSQTFAVKANDK 143
           DQMKAC+T E SQ   VKA DK
Sbjct: 121 DQMKACETGELSQAPVVKATDK 142

The following BLAST results are available for this feature:

BLAST of PI0023298 vs.


Match Name	E-value	Identity	Description

BLAST of PI0023298 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SU65	3.4e-42	66.90	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7SSD3	5.8e-42	66.90	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]
A0A5A7SRE2	9.9e-42	66.90	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CX82	2.9e-41	66.20	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TS57	1.1e-40	65.49	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of PI0023298 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033526.1	7.1e-42	66.90	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYJ95662.1 ty3-gyp...	[more]
KAA0032461.1	1.2e-41	66.90	retrotransposon gag protein [Cucumis melo var. makuwa] >TYJ99906.1 retrotranspos...	[more]
KAA0032121.1	2.1e-41	66.90	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK16493.1	6.0e-41	66.20	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0044976.1	2.3e-40	65.49	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0023298 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 95..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023298.1	PI0023298.1	mRNA