PI0023160 (gene) Melon (PI 482460) v1

Overview


Name	PI0023160
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	mediator of RNA polymerase II transcription subunit 30
Location	chr02: 24977932 .. 24980672 (+)
RNA-Seq Expression	PI0023160
Synteny	PI0023160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GATTACAAATGGGAGTTAGGGTTTCATGAACATCACAAGCTCAAGTGTGATTGAAAGTTGGAATTGGGAATTTTGAAGATTCCGAACCCTCTCTTTATAAATTCGGTGGATTTTTTATTGTAGTAGCATCACAGGAGCATCGATTTTTTCTTCTGGAAACGTATTATGGAAGAGAAATCCACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCATGGCTACTTCTGGTTTAACAATTGCCAGCCCAAATGGTCCATCTTCGCATTCTGCTAATGGAGTTGTAAACGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCACGTGTTCGCTATAAAAACTCAGTCCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGTAAAATTACTGACTGATCTTCCATTTATTCATCTAGTTCAATAGCCAACGTTAATCATTTCGAATTTGATTTTTATCTGGGAAAATCGAGATCGATTTGGAGATATTAGGTTCTCCCCTGCTTTAAATGTCGGAACATCGAATCTTCGTATCCATTTCCGACGAATTCCTAAATTCTTCCTGAATTTGATAGATTGCGGATGCTACATTTGATCTGGTTTCATTTTCACTACTGCTGATTGATGCGTGTACTTACTCCTTGTACTAGTAATTTGATAGATTTCTAACTGCATAGGCTTGTTCTTCACCTATGCTGATTCAATGATTTTAAGTAGAGTTTCGTGTTTATTGATAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATCGCCTGCAGACCAATCCGAGATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGTATTTTTATTGTCTCATCAGTTTGTGAATTCATGTCAGTAATTTATTTTTCTTCAAGACTTTTTGGATGTGCCTGAACACTTCAATGATTTCTGGAAATTATTTACTTACTTATTAAGATTTTGGAGTCTACTTAGCTTCAACAACGCAGTATTGTCATTTTTTCGATATATCTGTGTAAATTTACTTAAAAGTTAAAATATATACAATGAAACTGAGAAGGTAATGTCTTTAAAGATTTCAAGACAACAGTTCTGTTTTCTTCTTATTTGTTGTATCTCTATATCCAAGGAAAGATTTTGAAACTAAACGGACAATAGAGAAAATCAAATATTGAAACTTGTAATATTTTGGAGGATACGTGATAGGTATTATCGATGATATGCTTTTTCTTTCATCTTATCTTTATCCTTGTTAAGGTCCTAGAAATGACATTTTTTCCCTTTAATTACTATCTTATAAGGGTCCTATCTTCGGTTTCTTTGCAGGAACTTGTGGTTAAAAATTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGAAAAAACGTGCTAGCTTTGACTTTTGAGTCTCCTCGCTAATTGAGCTGTTGAAGTTTATAATTGCGATGCTCTGTTTCTTGAAAAGATGAGTTGTTATTAGAACGTTTCTTTGCATCTCTTCAATGAAAGTAGTGATTATACAAATTTGCCATTGTCTGTAAATTTTCAATATAGGTAAGGCTCTGATAAATCTAGTACCAGAGGAATTAAAGGTTCAATTACGTGAGTTTTATCATACAAGTCATCTACAAAAACCCTTTAGACACTCTTAAAACACACTTGGATGCACACAAAAACAACCATATAGCTTCAGCGTATGAAACATAGTTACACTTGCTTTCAACTTCTAAAATCTAGCTTGTAAGAAATGAAAATTTATGTGGCCATATTAGGTTTTATACCCTCGAAGAATACATTCAGTTGTGGATTGATGATCTTGTAGTAAGGGAAGATCTCATATCCACAATGGCTGATTCATCTGCACCCAACTTGATGGCCTCTTTGCTTGCTCTGATGAACCTTGAAACAGCTCCTCTAGTGTAATCGTGTGCTTCTTTAACGGTCATCTTCTCGCTTATTTCATTAGGGAAACTACTCAGGAAATGATCACCATTTAGAACAGCAGCTAACTGTACGACCTCGCTCTGAAACTCAGATAATCCACTGTTTTCATTTGCTTCTGTTTTCCTCAAAGGTGTCACTTCAGGCAAGGTTACTGCAACAAGTGTTTGTGAAATTAACAACAATACATAATTTCAATTGGGAAAATGTCGATGAGTCTCAAACCGGTATAGATTGAGGATAAGATACCTGGACAGTCGGTTCGTGGCGAGGTTAACTGGTCAACGATGTCCTCAAATGTCCCAGCCCAAGCATCTCTGTGAGTCAGGAAGTTAGAGGGGATATTGAATATTTTCTTTATGGTAGCAGGGATTGAGGAATGCTCAAACTCAGAGTTCGGAGTTGGACCCTTTGGACTGCTTATTACTGCAAAACAAAACAGAGTTTAGAGCTATAAACACACCCCAGAAAGGGAAATGGCTAAACATTTATGGACGGTTGTAAAGGCTATTGATTCAGAGGAGAAGAGTGGGTGGCAAGAACTTGGCTTACCAGTTCCTTTCTTAATCCAAGGC

mRNA sequence

GATTACAAATGGGAGTTAGGGTTTCATGAACATCACAAGCTCAAGTGTGATTGAAAGTTGGAATTGGGAATTTTGAAGATTCCGAACCCTCTCTTTATAAATTCGGTGGATTTTTTATTGTAGTAGCATCACAGGAGCATCGATTTTTTCTTCTGGAAACGTATTATGGAAGAGAAATCCACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCATGGCTACTTCTGGTTTAACAATTGCCAGCCCAAATGGTCCATCTTCGCATTCTGCTAATGGAGTTGTAAACGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCACGTGTTCGCTATAAAAACTCAGTCCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATCGCCTGCAGACCAATCCGAGATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTGGTTAAAAATTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGAAAAAACGTGCTAGCTTTGACTTTTGAGTCTCCTCGCTAATTGAGCTGTTGAAGTTTATAATTGCGATGCTCTGTTTCTTGAAAAGATGAGTTGTTATTAGAACGTTTCTTTGCATCTCTTCAATGAAAGTAGTGATTATACAAATTTGCCATTGTCTGTAAATTTTCAATATAGGTAAGGCTCTGATAAATCTAGTACCAGAGGAATTAAAGGTTCAATTACGTGAGTTTTATCATACAAGTCATCTACAAAAACCCTTTAGACACTCTTAAAACACACTTGGATGCACACAAAAACAACCATATAGCTTCAGCGTATGAAACATAGTTACACTTGCTTTCAACTTCTAAAATCTAGCTTGTAAGAAATGAAAATTTATGTGGCCATATTAGGTTTTATACCCTCGAAGAATACATTCAGTTGTGGATTGATGATCTTGTAGTAAGGGAAGATCTCATATCCACAATGGCTGATTCATCTGCACCCAACTTGATGGCCTCTTTGCTTGCTCTGATGAACCTTGAAACAGCTCCTCTAGTGTAATCGTGTGCTTCTTTAACGGTCATCTTCTCGCTTATTTCATTAGGGAAACTACTCAGGAAATGATCACCATTTAGAACAGCAGCTAACTGTACGACCTCGCTCTGAAACTCAGATAATCCACTGTTTTCATTTGCTTCTGTTTTCCTCAAAGGTGTCACTTCAGGCAAGGTTACTGCAACAAGTGTTTGTGAAATTAACAACAATACATAATTTCAATTGGGAAAATGTCGATGAGTCTCAAACCGGTATAGATTGAGGATAAGATACCTGGACAGTCGGTTCGTGGCGAGGTTAACTGGTCAACGATGTCCTCAAATGTCCCAGCCCAAGCATCTCTGTGAGTCAGGAAGTTAGAGGGGATATTGAATATTTTCTTTATGGTAGCAGGGATTGAGGAATGCTCAAACTCAGAGTTCGGAGTTGGACCCTTTGGACTGCTTATTACTGCAAAACAAAACAGAGTTTAGAGCTATAAACACACCCCAGAAAGGGAAATGGCTAAACATTTATGGACGGTTGTAAAGGCTATTGATTCAGAGGAGAAGAGTGGGTGGCAAGAACTTGGCTTACCAGTTCCTTTCTTAATCCAAGGC

Coding sequence (CDS)

ATGGAAGAGAAATCCACTAATGTTTTGGCTCTTCCCCAGACAACTCAAGAGCTTGCAATGGAGGGCATCAAGCATCTTGAAGAAACCATAGAATCCGCTTTCCAGATCCTCTACTCCATGAATGACGAGCTCTGTAATCCCACATTATGGTCCACCACTTCTTCAACGGCAACCATGGCTACTTCTGGTTTAACAATTGCCAGCCCAAATGGTCCATCTTCGCATTCTGCTAATGGAGTTGTAAACGGTGATGCTAGTTCCGAAAGCACTAGCCATCACACCGATTCCAGCGGCGGCGGAGGCAGCGGTAGTGGGGGAGCCCTTGAGGAGGCACGTGTTCGCTATAAAAACTCAGTCCTTGCACTTCGTGCTATTCTTGCTGCAATCCCCAATTCTCAGAAGGCAAAAGCATACGAATCGGGTACGAGTGGTCATGCATCGCCTGCAGACCAATCCGAGATTGATAAGTTGGAACAACACCTCTCTAATCTCAGAAAGGAACTTGTGGTTAAAAATTTGCATATCAAGCTTCTGATAGATCAACTACGAGATCTTGTTGCTGATGTATCTACATGGCAAAGTCCTTGTTCTGTGTGA

Protein sequence

MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVLALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVSTWQSPCSV

Homology

[Close]

BLAST of PI0023160 vs. ExPASy Swiss-Prot
Match: Q9FMV4 (Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana OX=3702 GN=MED30 PE=1 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 4.4e-45
Identity = 107/187 (57.22%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 14  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPS 73
           TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST+++ ++ AT+       NG +
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTSATPSSAATT----TGSNGSA 72

Query: 74  SHSANGVVNGDASSESTSHHTDSSGGGGSGSGG--ALEEARVRYKNSVLALRAILAAIPN 133
             SA+      A+ + TSHH++S+GGGG G  G   L+EA +RYKNSV +LRA+LAAIPN
Sbjct: 73  LVSADA-----AAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAIPN 132

Query: 134 SQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVST 193
           SQKAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+ST
Sbjct: 133 SQKAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADIST 189

Query: 194 WQSPCSV 199
           WQSPCSV
Sbjct: 193 WQSPCSV 189

[Close]

BLAST of PI0023160 vs. ExPASy TrEMBL
Match: A0A0A0LNW4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 5.2e-97
Identity = 196/198 (98.99%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMA 60
           MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT A
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASP+GPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of PI0023160 vs. ExPASy TrEMBL
Match: A0A5A7USU3 (Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00490 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.7e-95
Identity = 194/198 (97.98%), Postives = 194/198 (97.98%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMA 60
           MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT A
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSS GGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of PI0023160 vs. ExPASy TrEMBL
Match: A0A1S3CMZ7 (mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 GN=LOC103502315 PE=4 SV=1)

HSP 1 Score: 358.6 bits (919), Expect = 1.7e-95
Identity = 194/198 (97.98%), Postives = 194/198 (97.98%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMA 60
           MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT A
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSS GGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of PI0023160 vs. ExPASy TrEMBL
Match: A0A6J1JFZ2 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=3661 GN=LOC111484777 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.9e-92
Identity = 186/198 (93.94%), Postives = 192/198 (96.97%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMA 60
           MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT  
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60

Query: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASPN PSSHS NGVVNGDASSEST+HHTD+S GGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198

[Close]

BLAST of PI0023160 vs. ExPASy TrEMBL
Match: A0A6J1E0F5 (mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=3662 GN=LOC111429707 PE=4 SV=1)

HSP 1 Score: 347.8 bits (891), Expect = 2.9e-92
Identity = 186/198 (93.94%), Postives = 192/198 (96.97%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMA 60
           MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT  
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60

Query: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASPN PSSHS NGVVNGDASSEST+HHTD+S GGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198

[Close]

BLAST of PI0023160 vs. NCBI nr
Match: XP_004138044.1 (mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN63478.1 hypothetical protein Csa_013518 [Cucumis sativus])

HSP 1 Score: 363.6 bits (932), Expect = 1.1e-96
Identity = 196/198 (98.99%), Postives = 197/198 (99.49%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMA 60
           MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT A
Sbjct: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASP+GPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPSGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of PI0023160 vs. NCBI nr
Match: XP_008464424.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo] >KAA0057767.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa] >TYJ98448.1 mediator of RNA polymerase II transcription subunit 30 [Cucumis melo var. makuwa])

HSP 1 Score: 358.6 bits (919), Expect = 3.4e-95
Identity = 194/198 (97.98%), Postives = 194/198 (97.98%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMA 60
           MEEKST VLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT A
Sbjct: 1   MEEKSTTVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTA 60

Query: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSS GGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKAYESGTS HASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAYESGTSAHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVADVSTWQSPCSV
Sbjct: 181 QLRDLVADVSTWQSPCSV 198

[Close]

BLAST of PI0023160 vs. NCBI nr
Match: XP_022921424.1 (mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_022987135.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita maxima] >XP_023515464.1 mediator of RNA polymerase II transcription subunit 30 [Cucurbita pepo subsp. pepo] >KAG6589379.1 Mediator of RNA polymerase II transcription subunit 30, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023058.1 Mediator of RNA polymerase II transcription subunit 30 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 347.8 bits (891), Expect = 6.1e-92
Identity = 186/198 (93.94%), Postives = 192/198 (96.97%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMA 60
           MEEK TNVL+LPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTAT  
Sbjct: 1   MEEKPTNVLSLPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATTT 60

Query: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGLTIASPN PSSHS NGVVNGDASSEST+HHTD+S GGGSGSGGALEEARVRYKNSVL
Sbjct: 61  TSGLTIASPNAPSSHSTNGVVNGDASSESTNHHTDTSSGGGSGSGGALEEARVRYKNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKAKA+ESGTSGHASPADQSEIDKLEQHLSNLRKEL+VKNLHIKLLID
Sbjct: 121 ALRAILAAIPNSQKAKAHESGTSGHASPADQSEIDKLEQHLSNLRKELMVKNLHIKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLR+LVADVSTWQSPCSV
Sbjct: 181 QLRELVADVSTWQSPCSV 198

[Close]

BLAST of PI0023160 vs. NCBI nr
Match: XP_038879540.1 (mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida])

HSP 1 Score: 342.4 bits (877), Expect = 2.6e-90
Identity = 188/198 (94.95%), Postives = 189/198 (95.45%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMA 60
           MEEK TNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSST T A
Sbjct: 2   MEEKPTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTVTTA 61

Query: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TSGL IASPNGPSSHS NGVVNGDASSESTSHHTDSS GGGSGSGGALEEARVRYKNSVL
Sbjct: 62  TSGLAIASPNGPSSHSVNGVVNGDASSESTSHHTDSSSGGGSGSGGALEEARVRYKNSVL 121

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIPNSQKA AYESGTSG  SPADQSEIDKLEQHLS+LRKELVVKNLHIKLLID
Sbjct: 122 ALRAILAAIPNSQKATAYESGTSG--SPADQSEIDKLEQHLSSLRKELVVKNLHIKLLID 181

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVADVSTWQSPCSV
Sbjct: 182 QLRDLVADVSTWQSPCSV 197

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BLAST of PI0023160 vs. NCBI nr
Match: XP_022134927.1 (mediator of RNA polymerase II transcription subunit 30 [Momordica charantia])

HSP 1 Score: 323.9 bits (829), Expect = 9.4e-85
Identity = 174/198 (87.88%), Postives = 185/198 (93.43%), Query Frame = 0


Query: 1   MEEKSTNVLALPQTTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMA 60
           ME+K T++LALPQTTQELA+EGIKHLEETIESAFQILYSMNDELCNPTLWSTTSST   A
Sbjct: 1   MEDKPTSILALPQTTQELAIEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSST---A 60

Query: 61  TSGLTIASPNGPSSHSANGVVNGDASSESTSHHTDSSGGGGSGSGGALEEARVRYKNSVL 120
           TS L+IASPNGPS HS NGVVNGDASSEST+HH D+S GGG+GSGGALEEARVRY NSVL
Sbjct: 61  TSALSIASPNGPSPHSTNGVVNGDASSESTNHHADTSSGGGTGSGGALEEARVRYNNSVL 120

Query: 121 ALRAILAAIPNSQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLID 180
           ALRAILAAIP+SQ AKAYESGTSGHASPADQSEIDKLEQHL NLRKELV KNLH+KLLID
Sbjct: 121 ALRAILAAIPSSQNAKAYESGTSGHASPADQSEIDKLEQHLCNLRKELVNKNLHLKLLID 180

Query: 181 QLRDLVADVSTWQSPCSV 199
           QLRDLVAD+STWQSPCSV
Sbjct: 181 QLRDLVADISTWQSPCSV 195

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BLAST of PI0023160 vs. TAIR 10
Match: AT5G63480.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 182.6 bits (462), Expect = 3.2e-46
Identity = 107/187 (57.22%), Postives = 140/187 (74.87%), Query Frame = 0


Query: 14  TTQELAMEGIKHLEETIESAFQILYSMNDELCNPTLWSTTSSTATMATSGLTIASPNGPS 73
           TTQELAMEG K LEETIE+AFQI+ +MNDELCNP+LWST+++ ++ AT+       NG +
Sbjct: 13  TTQELAMEGEKQLEETIEAAFQIISAMNDELCNPSLWSTSATPSSAATT----TGSNGSA 72

Query: 74  SHSANGVVNGDASSESTSHHTDSSGGGGSGSGG--ALEEARVRYKNSVLALRAILAAIPN 133
             SA+      A+ + TSHH++S+GGGG G  G   L+EA +RYKNSV +LRA+LAAIPN
Sbjct: 73  LVSADA-----AAIDGTSHHSESAGGGGGGGSGNSVLDEASLRYKNSVTSLRAVLAAIPN 132

Query: 134 SQKAKAYESGTSGHASPADQSEIDKLEQHLSNLRKELVVKNLHIKLLIDQLRDLVADVST 193
           SQKAKA E   +G  SP  + EI+KLE+   +LR E+  KN+H+K LID+LR+L+AD+ST
Sbjct: 133 SQKAKASEM-QNGLGSPESEDEIEKLEEQALSLRMEIAKKNVHVKELIDKLRELIADIST 189

Query: 194 WQSPCSV 199
           WQSPCSV
Sbjct: 193 WQSPCSV 189

The following BLAST results are available for this feature:

BLAST of PI0023160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FMV4	4.4e-45	57.22	Mediator of RNA polymerase II transcription subunit 30 OS=Arabidopsis thaliana O...	[more]

BLAST of PI0023160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNW4	5.2e-97	98.99	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001500 PE=4 SV=1	[more]
A0A5A7USU3	1.7e-95	97.98	Mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo var. maku...	[more]
A0A1S3CMZ7	1.7e-95	97.98	mediator of RNA polymerase II transcription subunit 30 OS=Cucumis melo OX=3656 G...	[more]
A0A6J1JFZ2	2.9e-92	93.94	mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita maxima OX=36...	[more]
A0A6J1E0F5	2.9e-92	93.94	mediator of RNA polymerase II transcription subunit 30 OS=Cucurbita moschata OX=...	[more]

BLAST of PI0023160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004138044.1	1.1e-96	98.99	mediator of RNA polymerase II transcription subunit 30 [Cucumis sativus] >KGN634...	[more]
XP_008464424.1	3.4e-95	97.98	PREDICTED: mediator of RNA polymerase II transcription subunit 30 [Cucumis melo]...	[more]
XP_022921424.1	6.1e-92	93.94	mediator of RNA polymerase II transcription subunit 30 [Cucurbita moschata] >XP_...	[more]
XP_038879540.1	2.6e-90	94.95	mediator of RNA polymerase II transcription subunit 30 [Benincasa hispida]	[more]
XP_022134927.1	9.4e-85	87.88	mediator of RNA polymerase II transcription subunit 30 [Momordica charantia]	[more]

BLAST of PI0023160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63480.1	3.2e-46	57.22	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 154..174
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..101
None	No IPR available	PANTHER	PTHR36406:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30	coord: 7..198
IPR034568	Mediator of RNA polymerase II transcription subunit 30	PANTHER	PTHR36406	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 30	coord: 7..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023160.1	PI0023160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016592	mediator complex