PI0023081 (gene) Melon (PI 482460) v1

Overview


Name	PI0023081
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr03: 20996802 .. 20997622 (-)
RNA-Seq Expression	PI0023081
Synteny	PI0023081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTGGTGGAGAAATTTTACGCCGCTAAACTCAATGCTGAGGAGTTTAGCGTTGAAATTAGTGGGAAAACGGTGAGCTTCGACGCGGAGGCCATCAATAATCTATACGAGTTACCCAATGATGTTGAAACACCTGGGCAAGAATATGTGGTCAGTCTCACGAAGAAAATGGCCGTGAAACGTTGGAAGACATCTCCTTGCCTAGGGCCGTATGGGAAATCACGCCGACAGGGAAGTATCAACTTTATCCACACCAGCTAACCACAGAAGCAAGTGTGTGGCTCTTCTTCATCAAAAAGAAGATATTCCCTACGTGCCATGACAACACCATTAACTTAGAGTCAGCGATGCTTCTCTATTGCATACTGACAAAGAAGCGCGTTAATCTCGACGATCTGATAGCTACATCCATTCTGTCTTGGATGCGAGCTCCCAAGGGCGCCATGCCCTTCCTATCTACAGTCGAAGCCCTCTGTGTGAAGGTCATGTCGTTTCTATGCGCCATGAACACAGTCCCAATTCCAGGCAGCCTGTGTAATCAAATGTGTTTGAATCGCATGATCACCTTCCATGCCCACAAGGAAATGGAAAGGCGGTCAAAGACATTGGGTGACACAGCAACTGAAGGCGTGGCCCAGGCAGATCACAAGCGAAAAGCCCCAGCCACCATATCAACCTCTCAACCAAAAGTCAAAAAACTAAAGATTGATGCGACGAGACAACCCCAGCCACTCAAAATCATCCACCCCTCTTCCCAGCTAACCAAAAGAACTCCCTCCAAAATTCCAAAAAGATTCCAGCCTCTCTCAACCACCTAG

mRNA sequence

ATGGGAGTGGTGGAGAAATTTTACGCCGCTAAACTCAATGCTGAGGAGTTTAGCGTTGAAATTAGTGGGAAAACGGTGAGCTTCGACGCGGAGGCCATCAATAATCTATACGAGTTACCCAATGATGTTGAAACACCTGGGCAAGAATATGTGTCTCACGAAGAAAATGGCCGTGAAACGTTGGAAGACATCTCCTTGCCTAGGGCCGTATGGGAAATCACGCCGACAGGGAAGTATCAACTTTATCCACACCAGCTAACCACAGAAGCAAGTGTGTGGCTCTTCTTCATCAAAAAGAAGATATTCCCTACGTGCCATGACAACACCATTAACTTAGAGTCAGCGATGCTTCTCTATTGCATACTGACAAAGAAGCGCGTTAATCTCGACGATCTGATAGCTACATCCATTCTGTCTTGGATGCGAGCTCCCAAGGGCGCCATGCCCTTCCTATCTACAGTCGAAGCCCTCTGTGTGAAGGTCATGTCGTTTCTATGCGCCATGAACACAGTCCCAATTCCAGGCAGCCTGTGTAATCAAATGTGTTTGAATCGCATGATCACCTTCCATGCCCACAAGGAAATGGAAAGGCGGTCAAAGACATTGGGTGACACAGCAACTGAAGGCGTGGCCCAGGCAGATCACAAGCGAAAAGCCCCAGCCACCATATCAACCTCTCAACCAAAAGTCAAAAAACTAAAGATTGATGCGACGAGACAACCCCAGCCACTCAAAATCATCCACCCCTCTTCCCAGCTAACCAAAAGAACTCCCTCCAAAATTCCAAAAAGATTCCAGCCTCTCTCAACCACCTAG

Coding sequence (CDS)

ATGGGAGTGGTGGAGAAATTTTACGCCGCTAAACTCAATGCTGAGGAGTTTAGCGTTGAAATTAGTGGGAAAACGGTGAGCTTCGACGCGGAGGCCATCAATAATCTATACGAGTTACCCAATGATGTTGAAACACCTGGGCAAGAATATGTGTCTCACGAAGAAAATGGCCGTGAAACGTTGGAAGACATCTCCTTGCCTAGGGCCGTATGGGAAATCACGCCGACAGGGAAGTATCAACTTTATCCACACCAGCTAACCACAGAAGCAAGTGTGTGGCTCTTCTTCATCAAAAAGAAGATATTCCCTACGTGCCATGACAACACCATTAACTTAGAGTCAGCGATGCTTCTCTATTGCATACTGACAAAGAAGCGCGTTAATCTCGACGATCTGATAGCTACATCCATTCTGTCTTGGATGCGAGCTCCCAAGGGCGCCATGCCCTTCCTATCTACAGTCGAAGCCCTCTGTGTGAAGGTCATGTCGTTTCTATGCGCCATGAACACAGTCCCAATTCCAGGCAGCCTGTGTAATCAAATGTGTTTGAATCGCATGATCACCTTCCATGCCCACAAGGAAATGGAAAGGCGGTCAAAGACATTGGGTGACACAGCAACTGAAGGCGTGGCCCAGGCAGATCACAAGCGAAAAGCCCCAGCCACCATATCAACCTCTCAACCAAAAGTCAAAAAACTAAAGATTGATGCGACGAGACAACCCCAGCCACTCAAAATCATCCACCCCTCTTCCCAGCTAACCAAAAGAACTCCCTCCAAAATTCCAAAAAGATTCCAGCCTCTCTCAACCACCTAG

Protein sequence

MGVVEKFYAAKLNAEEFSVEISGKTVSFDAEAINNLYELPNDVETPGQEYVSHEENGRETLEDISLPRAVWEITPTGKYQLYPHQLTTEASVWLFFIKKKIFPTCHDNTINLESAMLLYCILTKKRVNLDDLIATSILSWMRAPKGAMPFLSTVEALCVKVMSFLCAMNTVPIPGSLCNQMCLNRMITFHAHKEMERRSKTLGDTATEGVAQADHKRKAPATISTSQPKVKKLKIDATRQPQPLKIIHPSSQLTKRTPSKIPKRFQPLSTT

Homology

[Close]

BLAST of PI0023081 vs. ExPASy TrEMBL
Match: A0A5A7V6M5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G00020 PE=4 SV=1)

HSP 1 Score: 156.4 bits (394), Expect = 1.7e-34
Identity = 81/177 (45.76%), Postives = 112/177 (63.28%), Query Frame = 0


Query: 1   MGVVEKFYAAKLNAEEFSVEISGKTVSFDAEAINNLYELPNDVETPGQEYVSHEENG--R 60
           M VV KFY  K N  +  + I  +   F+ E IN LY  PND E  GQE V+    G  +
Sbjct: 5   MDVVHKFYDVKFNPSDLFITIEDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKGLAK 64

Query: 61  ETLEDISLPRAVWEITPTG-KYQLYPHQLTTEASVWLFFIKKKIFPTCHDNTINLESAML 120
           E L+ ++ P  + E+ P   +YQLYPH LTT+A+VW+FF K KIFPTC+D+TI+++  ++
Sbjct: 65  EALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDYTVI 124

Query: 121 LYCILTKKRVNLDDLIATSILSWMRAPKGAMPFLSTVEALCVKVMSFLCAMNTVPIP 175
           LYCI+ KK +NLD++I  +IL+WM  PK AMPF S +E LC+K +  L       IP
Sbjct: 125 LYCIMIKKAINLDEIIKAAILTWMEIPKEAMPFPSLMEKLCLKFLPSLVRYPEKNIP 180

[Close]

BLAST of PI0023081 vs. ExPASy TrEMBL
Match: A0A5A7U806 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.4e-28
Identity = 72/145 (49.66%), Postives = 95/145 (65.52%), Query Frame = 0


Query: 21   ISGKTVSFDAEAINNLYELPNDVET-PGQEYV--SHEENGRETLEDISLPRAVWEITPTG 80
            +  + V F  E IN LY+LPND+   PGQ  +    E + ++ ++ I  P A    TPT 
Sbjct: 1227 VEDEKVPFTTEEINELYDLPNDLGAYPGQRLIVDCREGDAKKIIKLIVWPEADCTSTPTR 1286

Query: 81   KYQLYPHQLTTEASVWLFFIKKKIFPTCHDNTINLESAMLLYCILTKKRVNLDDLIATSI 140
            + QL+PHQLT EA+VWLFFIKKKIFPT HD+TI  E A++LYCI  KK  NL  ++  + 
Sbjct: 1287 RLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYVMNEAF 1346

Query: 141  LSWMRAPKGAMPFLSTVEALCVKVM 163
            LSWMR PK A PF +TV+ LC+K +
Sbjct: 1347 LSWMRNPKNAKPFPTTVKKLCLKYL 1371

[Close]

BLAST of PI0023081 vs. ExPASy TrEMBL
Match: A0A5D3CVL7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00870 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 2.4e-28
Identity = 72/145 (49.66%), Postives = 95/145 (65.52%), Query Frame = 0


Query: 21  ISGKTVSFDAEAINNLYELPNDVET-PGQEYV--SHEENGRETLEDISLPRAVWEITPTG 80
           +  + V F  E IN LY+LPND+   PGQ  +    E + ++ ++ I  P A    TPT 
Sbjct: 66  VEDEKVPFTTEEINELYDLPNDLGAYPGQRLIVDCREGDAKKIIKLIVWPEADCTSTPTR 125

Query: 81  KYQLYPHQLTTEASVWLFFIKKKIFPTCHDNTINLESAMLLYCILTKKRVNLDDLIATSI 140
           + QL+PHQLT EA+VWLFFIKKKIFPT HD+TI  E A++LYCI  KK  NL  ++  + 
Sbjct: 126 RLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYVMNEAF 185

Query: 141 LSWMRAPKGAMPFLSTVEALCVKVM 163
           LSWMR PK A PF +TV+ LC+K +
Sbjct: 186 LSWMRNPKNAKPFPTTVKKLCLKYL 210

[Close]

BLAST of PI0023081 vs. ExPASy TrEMBL
Match: A0A5D3CW17 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00800 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.7e-24
Identity = 75/197 (38.07%), Postives = 103/197 (52.28%), Query Frame = 0


Query: 3   VVEKFYAAKLNAEEFSVEISGKTVSFDAEAINNLYELPND------VETPGQEYVSHEEN 62
           VV  FY A +N EE   E+  K V F  +AIN LY L N+       E P         +
Sbjct: 62  VVYLFYRAYINIEELYAEVKEKRVDFGPKAINALYGLKNNEIGHLIFENP------KARD 121

Query: 63  GRETLEDISLPRAVWEITPTGKYQLYPHQLTTEASVWLFFIKKKIFPTCHDNTINLESAM 122
            ++ LE+I  P   W+  PT KYQL+P+ L TE SVWL FIKK I PT HD+TI++E  M
Sbjct: 122 LQDALENIIWPGTKWDRMPTEKYQLFPNDLNTEVSVWLVFIKKNIMPTRHDSTISMEIIM 181

Query: 123 LLYCILTKKRVNLDDLIATSILSWMRAPKGAMPFLSTVEALCVKVMSFLCAMNTVPIPGS 182
           LLY      + N  ++    +++W++ P GA PFL   + L +K    L     V +   
Sbjct: 182 LLYYNGDSNQFN--EISCEHLIAWVKHPCGAKPFLCLTKQLYIKAYPELEKSQQVQVSNG 241

Query: 183 LCNQMCLNRMITFHAHK 194
           +C    L+R IT H +K
Sbjct: 242 VCIGPTLHRFITIHKNK 250

[Close]

BLAST of PI0023081 vs. ExPASy TrEMBL
Match: A0A5D3DES7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00570 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.0e-23
Identity = 67/146 (45.89%), Postives = 89/146 (60.96%), Query Frame = 0


Query: 7   FYAAKLNAEEFSVEISGKTVSFDAEAINNLYELPNDVET-PGQEYVSHEENG--RETLED 66
           FYAAK ++ E  V +  K VSF  E IN LY L ND+++ P Q  ++    G  R  ++ 
Sbjct: 6   FYAAKYHSNESYVIVERKKVSFTMEEINELYGLLNDLDSYPSQSLIAEPTKGDSRMIIQL 65

Query: 67  ISLPRAVWEITPTGKYQLYPHQLTTEASVWLFFIKKKIFPTCHDNTINLESAMLLYCILT 126
           I+   A W  T T   QLYPHQLTTEA+VWL FIKKKI P C+D+T+ +E  +LLYC + 
Sbjct: 66  IAWLGAGWTRTTTRSLQLYPHQLTTEANVWLLFIKKKIIPMCYDSTVPIEYMLLLYCKMA 125

Query: 127 KKRVNLDDLIATSILSWMRAPKGAMP 150
           K+  NL  ++  + L  MR  KGA P
Sbjct: 126 KQPFNLGYMMNEAFLGLMRNSKGAKP 151

[Close]

BLAST of PI0023081 vs. NCBI nr
Match: KAA0062900.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 156.4 bits (394), Expect = 3.6e-34
Identity = 81/177 (45.76%), Postives = 112/177 (63.28%), Query Frame = 0


Query: 1   MGVVEKFYAAKLNAEEFSVEISGKTVSFDAEAINNLYELPNDVETPGQEYVSHEENG--R 60
           M VV KFY  K N  +  + I  +   F+ E IN LY  PND E  GQE V+    G  +
Sbjct: 5   MDVVHKFYDVKFNPSDLFITIEDEKFYFNVEVINELYNSPNDAEYLGQEIVTKSTKGLAK 64

Query: 61  ETLEDISLPRAVWEITPTG-KYQLYPHQLTTEASVWLFFIKKKIFPTCHDNTINLESAML 120
           E L+ ++ P  + E+ P   +YQLYPH LTT+A+VW+FF K KIFPTC+D+TI+++  ++
Sbjct: 65  EALKVVAWPGIMSEVKPMKLRYQLYPH-LTTKANVWMFFTKNKIFPTCYDSTISMDYTVI 124

Query: 121 LYCILTKKRVNLDDLIATSILSWMRAPKGAMPFLSTVEALCVKVMSFLCAMNTVPIP 175
           LYCI+ KK +NLD++I  +IL+WM  PK AMPF S +E LC+K +  L       IP
Sbjct: 125 LYCIMIKKAINLDEIIKAAILTWMEIPKEAMPFPSLMEKLCLKFLPSLVRYPEKNIP 180

[Close]

BLAST of PI0023081 vs. NCBI nr
Match: KAA0049609.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 5.0e-28
Identity = 72/145 (49.66%), Postives = 95/145 (65.52%), Query Frame = 0


Query: 21   ISGKTVSFDAEAINNLYELPNDVET-PGQEYV--SHEENGRETLEDISLPRAVWEITPTG 80
            +  + V F  E IN LY+LPND+   PGQ  +    E + ++ ++ I  P A    TPT 
Sbjct: 1227 VEDEKVPFTTEEINELYDLPNDLGAYPGQRLIVDCREGDAKKIIKLIVWPEADCTSTPTR 1286

Query: 81   KYQLYPHQLTTEASVWLFFIKKKIFPTCHDNTINLESAMLLYCILTKKRVNLDDLIATSI 140
            + QL+PHQLT EA+VWLFFIKKKIFPT HD+TI  E A++LYCI  KK  NL  ++  + 
Sbjct: 1287 RLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYVMNEAF 1346

Query: 141  LSWMRAPKGAMPFLSTVEALCVKVM 163
            LSWMR PK A PF +TV+ LC+K +
Sbjct: 1347 LSWMRNPKNAKPFPTTVKKLCLKYL 1371

[Close]

BLAST of PI0023081 vs. NCBI nr
Match: TYK15967.1 (hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 5.0e-28
Identity = 72/145 (49.66%), Postives = 95/145 (65.52%), Query Frame = 0


Query: 21  ISGKTVSFDAEAINNLYELPNDVET-PGQEYV--SHEENGRETLEDISLPRAVWEITPTG 80
           +  + V F  E IN LY+LPND+   PGQ  +    E + ++ ++ I  P A    TPT 
Sbjct: 66  VEDEKVPFTTEEINELYDLPNDLGAYPGQRLIVDCREGDAKKIIKLIVWPEADCTSTPTR 125

Query: 81  KYQLYPHQLTTEASVWLFFIKKKIFPTCHDNTINLESAMLLYCILTKKRVNLDDLIATSI 140
           + QL+PHQLT EA+VWLFFIKKKIFPT HD+TI  E A++LYCI  KK  NL  ++  + 
Sbjct: 126 RLQLFPHQLTIEANVWLFFIKKKIFPTHHDSTILTEYALVLYCINAKKPFNLGYVMNEAF 185

Query: 141 LSWMRAPKGAMPFLSTVEALCVKVM 163
           LSWMR PK A PF +TV+ LC+K +
Sbjct: 186 LSWMRNPKNAKPFPTTVKKLCLKYL 210

[Close]

BLAST of PI0023081 vs. NCBI nr
Match: KAA0041264.1 (hypothetical protein E6C27_scaffold128G002490 [Cucumis melo var. makuwa] >TYK16063.1 hypothetical protein E5676_scaffold32G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 121.7 bits (304), Expect = 9.7e-24
Identity = 75/197 (38.07%), Postives = 103/197 (52.28%), Query Frame = 0


Query: 3   VVEKFYAAKLNAEEFSVEISGKTVSFDAEAINNLYELPND------VETPGQEYVSHEEN 62
           VV  FY A +N EE   E+  K V F  +AIN LY L N+       E P         +
Sbjct: 62  VVYLFYRAYINIEELYAEVKEKRVDFGPKAINALYGLKNNEIGHLIFENP------KARD 121

Query: 63  GRETLEDISLPRAVWEITPTGKYQLYPHQLTTEASVWLFFIKKKIFPTCHDNTINLESAM 122
            ++ LE+I  P   W+  PT KYQL+P+ L TE SVWL FIKK I PT HD+TI++E  M
Sbjct: 122 LQDALENIIWPGTKWDRMPTEKYQLFPNDLNTEVSVWLVFIKKNIMPTRHDSTISMEIIM 181

Query: 123 LLYCILTKKRVNLDDLIATSILSWMRAPKGAMPFLSTVEALCVKVMSFLCAMNTVPIPGS 182
           LLY      + N  ++    +++W++ P GA PFL   + L +K    L     V +   
Sbjct: 182 LLYYNGDSNQFN--EISCEHLIAWVKHPCGAKPFLCLTKQLYIKAYPELEKSQQVQVSNG 241

Query: 183 LCNQMCLNRMITFHAHK 194
           +C    L+R IT H +K
Sbjct: 242 VCIGPTLHRFITIHKNK 250

[Close]

BLAST of PI0023081 vs. NCBI nr
Match: TYK22187.1 (hypothetical protein E5676_scaffold333G00570 [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 2.2e-23
Identity = 67/146 (45.89%), Postives = 89/146 (60.96%), Query Frame = 0


Query: 7   FYAAKLNAEEFSVEISGKTVSFDAEAINNLYELPNDVET-PGQEYVSHEENG--RETLED 66
           FYAAK ++ E  V +  K VSF  E IN LY L ND+++ P Q  ++    G  R  ++ 
Sbjct: 6   FYAAKYHSNESYVIVERKKVSFTMEEINELYGLLNDLDSYPSQSLIAEPTKGDSRMIIQL 65

Query: 67  ISLPRAVWEITPTGKYQLYPHQLTTEASVWLFFIKKKIFPTCHDNTINLESAMLLYCILT 126
           I+   A W  T T   QLYPHQLTTEA+VWL FIKKKI P C+D+T+ +E  +LLYC + 
Sbjct: 66  IAWLGAGWTRTTTRSLQLYPHQLTTEANVWLLFIKKKIIPMCYDSTVPIEYMLLLYCKMA 125

Query: 127 KKRVNLDDLIATSILSWMRAPKGAMP 150
           K+  NL  ++  + L  MR  KGA P
Sbjct: 126 KQPFNLGYMMNEAFLGLMRNSKGAKP 151

The following BLAST results are available for this feature:

BLAST of PI0023081 vs.


Match Name	E-value	Identity	Description

BLAST of PI0023081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6M5	1.7e-34	45.76	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold683G0002...	[more]
A0A5A7U806	2.4e-28	49.66	Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold163G00620 PE...	[more]
A0A5D3CVL7	2.4e-28	49.66	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3CW17	4.7e-24	38.07	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DES7	1.0e-23	45.89	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0023081 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062900.1	3.6e-34	45.76	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0049609.1	5.0e-28	49.66	transposase [Cucumis melo var. makuwa]	[more]
TYK15967.1	5.0e-28	49.66	hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa]	[more]
KAA0041264.1	9.7e-24	38.07	hypothetical protein E6C27_scaffold128G002490 [Cucumis melo var. makuwa] >TYK160...	[more]
TYK22187.1	2.2e-23	45.89	hypothetical protein E5676_scaffold333G00570 [Cucumis melo var. makuwa]	[more]

BLAST of PI0023081 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..271
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 244..271

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023081.1	PI0023081.1	mRNA