PI0023059 (gene) Melon (PI 482460) v1

Overview
NamePI0023059
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionPhosphoribosylaminoimidazole carboxylase atpase-subunit isoform 1
Locationchr05: 2120333 .. 2120659 (-)
RNA-Seq ExpressionPI0023059
SyntenyPI0023059
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTTCTCTCTTATGAAGACGCTTGCTTTTCTTTTCATTTTTCTTTCTATTTTCGACGTTTCGGCTGCCAGGGTCTTGAACGGAGAGCAGTGGCTTCCGGGGTCAAGGGTTTCCATCGCAGTGCTACGAGGTCCCGTGCCTAGTTCAAGTAGGAATCCGTGTTCCTTTATTCCTGGGTTTAGTCGGGGCCGGTGTACATTGAGCGAGGTGGAAGACGGTGCTGCCCATGTTCGTGGTGGCTCCTCCGCGTTCCCGGGCTTGAATGCTGATGGATTTGCAGCGGCTTCTATGGTTAATCAAACGCAGAAGCAAATTCTTCTATGA

mRNA sequence

ATGGCTTTCTCTCTTATGAAGACGCTTGCTTTTCTTTTCATTTTTCTTTCTATTTTCGACGTTTCGGCTGCCAGGGTCTTGAACGGAGAGCAGTGGCTTCCGGGGTCAAGGGTTTCCATCGCAGTGCTACGAGGTCCCGTGCCTAGTTCAAGTAGGAATCCGTGTTCCTTTATTCCTGGGTTTAGTCGGGGCCGGTGTACATTGAGCGAGGTGGAAGACGGTGCTGCCCATGTTCGTGGTGGCTCCTCCGCGTTCCCGGGCTTGAATGCTGATGGATTTGCAGCGGCTTCTATGGTTAATCAAACGCAGAAGCAAATTCTTCTATGA

Coding sequence (CDS)

ATGGCTTTCTCTCTTATGAAGACGCTTGCTTTTCTTTTCATTTTTCTTTCTATTTTCGACGTTTCGGCTGCCAGGGTCTTGAACGGAGAGCAGTGGCTTCCGGGGTCAAGGGTTTCCATCGCAGTGCTACGAGGTCCCGTGCCTAGTTCAAGTAGGAATCCGTGTTCCTTTATTCCTGGGTTTAGTCGGGGCCGGTGTACATTGAGCGAGGTGGAAGACGGTGCTGCCCATGTTCGTGGTGGCTCCTCCGCGTTCCCGGGCTTGAATGCTGATGGATTTGCAGCGGCTTCTATGGTTAATCAAACGCAGAAGCAAATTCTTCTATGA

Protein sequence

MAFSLMKTLAFLFIFLSIFDVSAARVLNGEQWLPGSRVSIAVLRGPVPSSSRNPCSFIPGFSRGRCTLSEVEDGAAHVRGGSSAFPGLNADGFAAASMVNQTQKQILL
Homology
BLAST of PI0023059 vs. ExPASy TrEMBL
Match: A0A0A0LJ84 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.2e-42
Identity = 92/105 (87.62%), Postives = 99/105 (94.29%), Query Frame = 0

Query: 1   MAFSLMKTLAFLFIFLSIFDVSAARVLNGEQWLPGSRVSIAVLRGPVPSSSRNPCSFIPG 60
           MAFSLMKT+AFLFIFLSI D+SAARVLNGE+WLPGS V  A+LRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVEDGAAHVRGGSSAFPGLNADGFAAASMVNQTQKQ 106
           FSRGRCTLSEV++G A VRGGSSAFPGLNADGFAAAS+VNQTQKQ
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQ 105

BLAST of PI0023059 vs. ExPASy TrEMBL
Match: A0A5A7VCY2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G001240 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 7.1e-40
Identity = 91/105 (86.67%), Postives = 94/105 (89.52%), Query Frame = 0

Query: 1   MAFSLMKTLAFLFIFLSIFDVSAARVLNGEQWLPGSRVSIAVLRGPVPSSSRNPCSFIPG 60
           MAFSL+KT+AFLFIFLSIFDVS  R      WLPGSRV IAVLRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLVKTVAFLFIFLSIFDVSVGR------WLPGSRVPIAVLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVEDGAAHVRGGSSAFPGLNADGFAAASMVNQTQKQ 106
           FSRGRCTLSEV+DGAA V GGSSAFPGLNADGFAAASMVNQTQKQ
Sbjct: 61  FSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQ 99

BLAST of PI0023059 vs. ExPASy TrEMBL
Match: A0A2N9F903 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11524 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 4.2e-08
Identity = 43/93 (46.24%), Postives = 54/93 (58.06%), Query Frame = 0

Query: 9   LAFLFIF-LSIFDVSAARVLNGEQWLPGSRVSIAVLRGPVPSSSRNPCSFIPGFSRGRCT 68
           L F+ +F L   +  A R L+GE WL  +     + RGPV  S  NPC++IPG S GRCT
Sbjct: 2   LIFIMLFVLGFHEALAMRPLDGEPWLNKNLAMQTLQRGPVTPSGPNPCTYIPGRSHGRCT 61

Query: 69  LSEVEDGAAHVRGGSSAFPGLNADGFAAASMVN 101
           LSE+ D A HV     AFP  +   FAAAS+ N
Sbjct: 62  LSEM-DVADHVAHAPPAFPD-HVVSFAAASIAN 92

BLAST of PI0023059 vs. ExPASy TrEMBL
Match: A0A0B2RDN7 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_008165 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.1e-08
Identity = 33/69 (47.83%), Postives = 41/69 (59.42%), Query Frame = 0

Query: 9  LAFLFIFLSIFDVSAARVLNGEQWLPGSRVSIAVLRGPVPSSSRNPCSFIPGFSRGRCTL 68
          L  + + LS+      R L GEQWL  + V  ++ RGPV SS RNPCS +PG SRGRCTL
Sbjct: 11 LTTMILVLSLEKTRGTRTLEGEQWLHNNLVLHSLQRGPVRSSQRNPCSTVPGRSRGRCTL 70

Query: 69 SEVEDGAAH 78
           E+     H
Sbjct: 71 GEINVAGHH 79

BLAST of PI0023059 vs. ExPASy TrEMBL
Match: I1JRQ4 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G248900 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.1e-08
Identity = 33/69 (47.83%), Postives = 41/69 (59.42%), Query Frame = 0

Query: 9  LAFLFIFLSIFDVSAARVLNGEQWLPGSRVSIAVLRGPVPSSSRNPCSFIPGFSRGRCTL 68
          L  + + LS+      R L GEQWL  + V  ++ RGPV SS RNPCS +PG SRGRCTL
Sbjct: 11 LTTMILVLSLEKTRGTRTLEGEQWLHNNLVLHSLQRGPVRSSQRNPCSTVPGRSRGRCTL 70

Query: 69 SEVEDGAAH 78
           E+     H
Sbjct: 71 GEINVAGHH 79

BLAST of PI0023059 vs. NCBI nr
Match: KGN60782.1 (hypothetical protein Csa_019261 [Cucumis sativus])

HSP 1 Score: 182.2 bits (461), Expect = 2.4e-42
Identity = 92/105 (87.62%), Postives = 99/105 (94.29%), Query Frame = 0

Query: 1   MAFSLMKTLAFLFIFLSIFDVSAARVLNGEQWLPGSRVSIAVLRGPVPSSSRNPCSFIPG 60
           MAFSLMKT+AFLFIFLSI D+SAARVLNGE+WLPGS V  A+LRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLMKTVAFLFIFLSIVDMSAARVLNGERWLPGSMVPFAMLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVEDGAAHVRGGSSAFPGLNADGFAAASMVNQTQKQ 106
           FSRGRCTLSEV++G A VRGGSSAFPGLNADGFAAAS+VNQTQKQ
Sbjct: 61  FSRGRCTLSEVDEGDASVRGGSSAFPGLNADGFAAASVVNQTQKQ 105

BLAST of PI0023059 vs. NCBI nr
Match: KAA0063581.1 (hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ97908.1 hypothetical protein E5676_scaffold285G001240 [Cucumis melo var. makuwa])

HSP 1 Score: 172.9 bits (437), Expect = 1.5e-39
Identity = 91/105 (86.67%), Postives = 94/105 (89.52%), Query Frame = 0

Query: 1   MAFSLMKTLAFLFIFLSIFDVSAARVLNGEQWLPGSRVSIAVLRGPVPSSSRNPCSFIPG 60
           MAFSL+KT+AFLFIFLSIFDVS  R      WLPGSRV IAVLRGPVPSSSRNPCSFIPG
Sbjct: 1   MAFSLVKTVAFLFIFLSIFDVSVGR------WLPGSRVPIAVLRGPVPSSSRNPCSFIPG 60

Query: 61  FSRGRCTLSEVEDGAAHVRGGSSAFPGLNADGFAAASMVNQTQKQ 106
           FSRGRCTLSEV+DGAA V GGSSAFPGLNADGFAAASMVNQTQKQ
Sbjct: 61  FSRGRCTLSEVDDGAASVHGGSSAFPGLNADGFAAASMVNQTQKQ 99

BLAST of PI0023059 vs. NCBI nr
Match: KAG6599331.1 (hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.7 bits (343), Expect = 1.2e-28
Identity = 66/85 (77.65%), Postives = 74/85 (87.06%), Query Frame = 0

Query: 21  VSAARVLNGEQWLPGSRVSIAVLRGPVPSSSRNPCSFIPGFSRGRCTLSEVEDGAAHVRG 80
           +SAARV+ GE+WLP  RV +A+LRG VPSSSRNPCSFIPGFSRGRCTLSE +DGAA V G
Sbjct: 1   MSAARVMTGERWLPAPRVPMAMLRGAVPSSSRNPCSFIPGFSRGRCTLSEADDGAAAVHG 60

Query: 81  GSSAFPGLNADGFAAASMVNQTQKQ 106
           GSSA  GLNADGFAAASM N+TQK+
Sbjct: 61  GSSALSGLNADGFAAASMANKTQKK 85

BLAST of PI0023059 vs. NCBI nr
Match: KAG6586324.1 (hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 127.9 bits (320), Expect = 5.4e-26
Identity = 74/109 (67.89%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MAFSLMKT--LAFLFIFLSIFDVSAARVLNGEQWLPGSRVSIAVLRGPVPSSSRNPCSFI 60
           M FS+MKT   AF+FI L IF VSAARVL GE+W P   VS  +LRG VP S RNPCSFI
Sbjct: 1   MPFSVMKTPAAAFVFILLCIFHVSAARVLTGERWRP---VSDRMLRGLVPPSGRNPCSFI 60

Query: 61  PGFSRGRCTLSEVED--GAAHVRGGSSAFPGLNADGFAAASMVNQTQKQ 106
           PG  RGRCTLSEVED  G     GGSSAFPG+N DGF+AA+MVN TQKQ
Sbjct: 61  PGLGRGRCTLSEVEDEAGGGGGGGGSSAFPGMNFDGFSAAAMVNGTQKQ 106

BLAST of PI0023059 vs. NCBI nr
Match: XP_021888699.1 (uncharacterized protein LOC110807772 [Carica papaya])

HSP 1 Score: 74.7 bits (182), Expect = 5.4e-10
Identity = 45/110 (40.91%), Postives = 64/110 (58.18%), Query Frame = 0

Query: 2   AFSLMKTLAFLFIFLSIF---DVSAARVLNGEQWLPGSRVSIAVLRGPVPSSSRNPCSFI 61
           +F+ M   A   + +S F     +A R+L+ EQWL  + +  ++ RGPVP S  NPC+FI
Sbjct: 9   SFTTMAKWAIAVLLVSCFLEQKTAAVRLLDEEQWLAKNLIVQSLQRGPVPPSGGNPCTFI 68

Query: 62  PGFSRGRCTLSEVEDGAAHVRGGSSAFPGLNADGFAAA---SMVNQTQKQ 106
           PG +RGRCTLSE++      R  ++AFP +  D  A     S  N+TQKQ
Sbjct: 69  PGRNRGRCTLSEMDVAGQFPRAPAAAFPDIVVDFGAVTAGNSGANETQKQ 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LJ841.2e-4287.62Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G010180 PE=4 SV=1[more]
A0A5A7VCY27.1e-4086.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A2N9F9034.2e-0846.24Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS11524 PE=4 SV=1[more]
A0A0B2RDN77.1e-0847.83Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_008165 PE=4 SV=1[more]
I1JRQ47.1e-0847.83Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_03G248900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN60782.12.4e-4287.62hypothetical protein Csa_019261 [Cucumis sativus][more]
KAA0063581.11.5e-3986.67hypothetical protein E6C27_scaffold329G00910 [Cucumis melo var. makuwa] >TYJ9790... [more]
KAG6599331.11.2e-2877.65hypothetical protein SDJN03_09109, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6586324.15.4e-2667.89hypothetical protein SDJN03_19057, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_021888699.15.4e-1040.91uncharacterized protein LOC110807772 [Carica papaya][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33592:SF6SUBFAMILY NOT NAMEDcoord: 5..105
NoneNo IPR availablePANTHERPTHR33592FAMILY NOT NAMEDcoord: 5..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0023059.1PI0023059.1mRNA