PI0023057 (gene) Melon (PI 482460) v1

Overview


Name	PI0023057
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Ribulose bisphosphate carboxylase large chain
Location	chr11: 9443425 .. 9444097 (+)
RNA-Seq Expression	PI0023057
Synteny	PI0023057

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGTATTTGCCAGAGAAGACGGAGTTCCTATCCTAATGCATGACTACTTAAGAAGAGGGTTCACTGCAAATACTAGCTTGGCTCATTATTGCCGAGATAATGGTTTATTTCTTCACATTCACCGCGCAATGGATGCAGTTATTGATAGACAATCAGGGTATGCATTTTCGTGTACTAGCTAAGGGGCCTTACGTATGTCTGGTGGAGATCATATTCATTCACGCCGGTACCGCGTAGTAGGTAAACTTGAAGGGGAAAGAGAAAGAACTTTGGGCTTTGTTGATTTATTGCGTGATGATTTTCTTGAAAAAGACCGAAGCTGTGGCATTTATTTCACTTAAGATTGGGTCTCTCTACAGGTCTTCTGCCTCTAGCTTCACGGGGTATTCGCCTTTGGCATATGCCTGCTCTGACCGAGATCTTTGGAGAGGAGATGATTCCGTACTAGAATTCGGTAGAGGAACTTTAGGGCATCCTTTTTTTTTAAATGCACCCGGTGCCGTAGCTAATCGCGTAGCTCTAGAAGCATGTGTACAAGCTTGTATTGAGGGACGTGATCTGGGTAATGAAATTATCCGTGAAGCTAGTAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAGGTATGGAAGGAAATTCAATTTGAATTCGAAGCAATGGATACTTTGTAA

mRNA sequence

ATGGCTGTATTTGCCAGAGAAGACGGAGTTCCTATCCTAATGCATGACTACTTAAGAAGAGGGTTCACTGCAAATACTAGCTTGGCTCATTATTGCCGAGATAATGGTTTATTTCTTCACATTCACCGCGCAATGGATGCAGTTATTGATAGACAATCAGGGTCTTCTGCCTCTAGCTTCACGGGGTATTCGCCTTTGGCATATGCCTGCTCTGACCGAGATCTTTGGAGAGGAGATGATTCCGTACTAGAATTCGGTAGAGGAACTTTAGGGCATCCTTTTTTTTTAAATGCACCCGGTGCCGTAGCTAATCGCGTAGCTCTAGAAGCATGTGTACAAGCTTGTATTGAGGGACGTGATCTGGGTAATGAAATTATCCGTGAAGCTAGTAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAGGTATGGAAGGAAATTCAATTTGAATTCGAAGCAATGGATACTTTGTAA

Coding sequence (CDS)

ATGGCTGTATTTGCCAGAGAAGACGGAGTTCCTATCCTAATGCATGACTACTTAAGAAGAGGGTTCACTGCAAATACTAGCTTGGCTCATTATTGCCGAGATAATGGTTTATTTCTTCACATTCACCGCGCAATGGATGCAGTTATTGATAGACAATCAGGGTCTTCTGCCTCTAGCTTCACGGGGTATTCGCCTTTGGCATATGCCTGCTCTGACCGAGATCTTTGGAGAGGAGATGATTCCGTACTAGAATTCGGTAGAGGAACTTTAGGGCATCCTTTTTTTTTAAATGCACCCGGTGCCGTAGCTAATCGCGTAGCTCTAGAAGCATGTGTACAAGCTTGTATTGAGGGACGTGATCTGGGTAATGAAATTATCCGTGAAGCTAGTAAATGGAGTCCTGAACTAGCTGCTGCTTGTGAGGTATGGAAGGAAATTCAATTTGAATTCGAAGCAATGGATACTTTGTAA

Protein sequence

MAVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGSSASSFTGYSPLAYACSDRDLWRGDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACIEGRDLGNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL

Homology

[Close]

BLAST of PI0023057 vs. ExPASy Swiss-Prot
Match: A4GG89 (Ribulose bisphosphate carboxylase large chain OS=Phaseolus vulgaris OX=3885 GN=rbcL PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.5e-51
Identity = 123/223 (55.16%), Postives = 130/223 (58.30%), Query Frame = 0


Query: 2   AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ--------- 61
           AVFARE GVPI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ         
Sbjct: 254 AVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRV 313

Query: 62  --------------SGSSASSFTGYSPLAYACSD--RD---------------------- 121
                         SG+      G   +     D  RD                      
Sbjct: 314 LAKALRLSGGDHVHSGTVVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPG 373

Query: 122 ----------LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACI 157
                     +W         GDDSVL+FG GTLGHP+  NAPGAVANRVALEACVQA  
Sbjct: 374 VLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWG-NAPGAVANRVALEACVQARN 433

[Close]

BLAST of PI0023057 vs. ExPASy Swiss-Prot
Match: P28442 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Platytheca verticillata OX=4273 GN=rbcL PE=3 SV=2)

HSP 1 Score: 201.1 bits (510), Expect = 9.5e-51
Identity = 123/223 (55.16%), Postives = 130/223 (58.30%), Query Frame = 0


Query: 2   AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ--------- 61
           AVFARE GVPI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ         
Sbjct: 244 AVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRV 303

Query: 62  --------------SGSSASSFTGYSPLAYACSD--RD---------------------- 121
                         SG+      G   +     D  RD                      
Sbjct: 304 LAKALRMSGGDHIHSGTVVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPG 363

Query: 122 ----------LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACI 157
                     +W         GDDSVL+FG GTLGHP+  NAPGAVANRVALEACVQA  
Sbjct: 364 VLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWG-NAPGAVANRVALEACVQARN 423

[Close]

BLAST of PI0023057 vs. ExPASy Swiss-Prot
Match: Q05992 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Polemonium reptans OX=13640 GN=rbcL PE=3 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 9.5e-51
Identity = 123/223 (55.16%), Postives = 130/223 (58.30%), Query Frame = 0


Query: 2   AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ--------- 61
           AVFARE GVPI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ         
Sbjct: 220 AVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRV 279

Query: 62  --------------SGSSASSFTGYSPLAYACSD--RD---------------------- 121
                         SG+      G   +     D  RD                      
Sbjct: 280 LAKALRMSGGDHIHSGTVVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPG 339

Query: 122 ----------LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACI 157
                     +W         GDDSVL+FG GTLGHP+  NAPGAVANRVALEACVQA  
Sbjct: 340 VLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWG-NAPGAVANRVALEACVQARN 399

[Close]

BLAST of PI0023057 vs. ExPASy Swiss-Prot
Match: Q31983 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cornus florida OX=4283 GN=rbcL PE=3 SV=2)

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-50
Identity = 122/223 (54.71%), Postives = 130/223 (58.30%), Query Frame = 0


Query: 2   AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ--------- 61
           A+FARE GVPI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ         
Sbjct: 244 AIFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRV 303

Query: 62  --------------SGSSASSFTGYSPLAYACSD--RD---------------------- 121
                         SG+      G   +     D  RD                      
Sbjct: 304 LAKALRMSGGDHIHSGTVVGKLEGEREITLGFVDLLRDDFVEKDRSRGIYFTQDWVSLPG 363

Query: 122 ----------LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACI 157
                     +W         GDDSVL+FG GTLGHP+  NAPGAVANRVALEACVQA  
Sbjct: 364 VLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWG-NAPGAVANRVALEACVQARN 423

[Close]

BLAST of PI0023057 vs. ExPASy Swiss-Prot
Match: Q32041 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cornus oblonga OX=16905 GN=rbcL PE=3 SV=2)

HSP 1 Score: 200.7 bits (509), Expect = 1.2e-50
Identity = 122/223 (54.71%), Postives = 130/223 (58.30%), Query Frame = 0


Query: 2   AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ--------- 61
           AVFARE GVPI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ         
Sbjct: 244 AVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRV 303

Query: 62  --------------SGSSASSFTGYSPLAYACSD--RD---------------------- 121
                         SG+      G   +     D  RD                      
Sbjct: 304 LAKALRMSGGDHIHSGTVVGKLEGEREITLGFVDLLRDDFIEKDRSRGLFFTQDWVSLPG 363

Query: 122 ----------LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACI 157
                     +W         GDDSVL+FG GTLGHP+  NAPGAVANRVALEACVQA  
Sbjct: 364 VLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWG-NAPGAVANRVALEACVQARN 423

[Close]

BLAST of PI0023057 vs. ExPASy TrEMBL
Match: A0A1R3KTQ0 (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_00945 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 5.2e-52
Identity = 118/179 (65.92%), Postives = 125/179 (69.83%), Query Frame = 0


Query: 2   AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGS------ 61
           AVFARE GVPI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ         
Sbjct: 5   AVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRV 64

Query: 62  -------SASSFTGYSPLAYACSDRDLWR--------GDDSVLEFGRGTLGHPFFLNAPG 121
                  S         L  A     +W         GDDSVL+FG GTLGHP+  NAPG
Sbjct: 65  LAKALRLSGGDHIHAGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWG-NAPG 124

Query: 122 AVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL 157
           AVANRVALEACVQA  EGRDL   GNE+IREASKWSPELAAACEVWKEI+FEF+AMDTL
Sbjct: 125 AVANRVALEACVQARNEGRDLAREGNEVIREASKWSPELAAACEVWKEIKFEFQAMDTL 182

[Close]

BLAST of PI0023057 vs. ExPASy TrEMBL
Match: A0A4U5MY68 (Ribulose bisphosphate carboxylase large chain OS=Populus alba OX=43335 GN=D5086_0000290450 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 4.4e-51
Identity = 120/191 (62.83%), Postives = 127/191 (66.49%), Query Frame = 0


Query: 2   AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGSSAS--- 61
           A+FARE GVPI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ         
Sbjct: 254 AIFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRV 313

Query: 62  ----------------------SFTGYSPLAYACSDRDLWR--------GDDSVLEFGRG 121
                                 S  G  P+  A     +W         GDDSVL+FG G
Sbjct: 314 LAKALRMSGGDHIHPGTVVDWVSLPGVLPV--ASGGIHVWHMPALTEIFGDDSVLQFGGG 373

Query: 122 TLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKE 157
           TLGHP+  NAPGAVANRVALEACVQA  EGRDL   GNEIIREASKWSPELAAACEVWKE
Sbjct: 374 TLGHPWG-NAPGAVANRVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEVWKE 433

[Close]

BLAST of PI0023057 vs. ExPASy TrEMBL
Match: A0A3S3PU74 (Ribulose bisphosphate carboxylase large chain OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02722300 PE=3 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 4.4e-51
Identity = 118/182 (64.84%), Postives = 124/182 (68.13%), Query Frame = 0


Query: 2   AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ--------- 61
           AVFARE G PI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ         
Sbjct: 279 AVFARELGAPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRV 338

Query: 62  --------SGSSASSFTGYSPLAYACSDRDLWR--------GDDSVLEFGRGTLGHPFFL 121
                    G    + T    L  A     +W         GDDSVL+FG GTLGHP+  
Sbjct: 339 LAKALRMSGGDHIHAGTVVGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWG- 398

Query: 122 NAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAM 156
           NAPGAVANRVALEACVQA  EGRDL   GNEIIREASKWSPELAAACEVWKEI+FEF AM
Sbjct: 399 NAPGAVANRVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFAAM 458

[Close]

BLAST of PI0023057 vs. ExPASy TrEMBL
Match: A0A7J7L730 (Ribulose bisphosphate carboxylase large chain OS=Kingdonia uniflora OX=39325 GN=GIB67_037670 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.9e-50
Identity = 120/193 (62.18%), Postives = 127/193 (65.80%), Query Frame = 0


Query: 2   AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ--------- 61
           AVFARE GVPI+MHDYL  GFTANTSL+HYCRDNGL LHIHRAM AVIDRQ         
Sbjct: 254 AVFARELGVPIVMHDYLTGGFTANTSLSHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRV 313

Query: 62  --------------SGSSASSFTGYSP----LAYACSDRDLWR--------GDDSVLEFG 121
                         SG+      G       L  A     +W         GDDSVL+FG
Sbjct: 314 LAKALRMSGGDHIHSGTVVGKLEGERNHLRFLPVASGGIHVWHMPALTEIFGDDSVLQFG 373

Query: 122 RGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVW 157
            GTLGHP+  NAPGAVANRVALEACVQA  EGRDL   GNEIIREA KWSPELAAACEVW
Sbjct: 374 GGTLGHPWG-NAPGAVANRVALEACVQARNEGRDLAREGNEIIREACKWSPELAAACEVW 433

[Close]

BLAST of PI0023057 vs. ExPASy TrEMBL
Match: A0A446PLI2 (Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_3Bv1G076260 PE=4 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 5.4e-49
Identity = 111/166 (66.87%), Postives = 120/166 (72.29%), Query Frame = 0


Query: 2   AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGSSASSFT 61
           AVFARE GVPI+MHDYL  GFTANT+LAHYCRDNGL LHIHRAM AVIDRQ         
Sbjct: 43  AVFARELGVPIVMHDYLTGGFTANTTLAHYCRDNGLLLHIHRAMHAVIDRQKN---HGMP 102

Query: 62  GYSPLAYACSDRDLWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQ 121
           G  P+  A     +W         GDDSVL+FG GTLGHP+  NAPGA ANRVALEACVQ
Sbjct: 103 GVIPV--ALGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWG-NAPGATANRVALEACVQ 162

Query: 122 ACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL 157
           A  EG DL   GNEIIR A KWSPELAAACEVWK I+FEFE +DT+
Sbjct: 163 ARNEGHDLAREGNEIIRAACKWSPELAAACEVWKAIKFEFEPVDTI 202

[Close]

BLAST of PI0023057 vs. NCBI nr
Match: OMP10484.1 (hypothetical protein CCACVL1_00945 [Corchorus capsularis])

HSP 1 Score: 213.8 bits (543), Expect = 1.1e-51
Identity = 118/179 (65.92%), Postives = 125/179 (69.83%), Query Frame = 0


Query: 2   AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGS------ 61
           AVFARE GVPI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ         
Sbjct: 5   AVFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRV 64

Query: 62  -------SASSFTGYSPLAYACSDRDLWR--------GDDSVLEFGRGTLGHPFFLNAPG 121
                  S         L  A     +W         GDDSVL+FG GTLGHP+  NAPG
Sbjct: 65  LAKALRLSGGDHIHAGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWG-NAPG 124

Query: 122 AVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL 157
           AVANRVALEACVQA  EGRDL   GNE+IREASKWSPELAAACEVWKEI+FEF+AMDTL
Sbjct: 125 AVANRVALEACVQARNEGRDLAREGNEVIREASKWSPELAAACEVWKEIKFEFQAMDTL 182

[Close]

BLAST of PI0023057 vs. NCBI nr
Match: RWR97768.1 (ribulose-15-bisphosphate carboxylase/oxygenase large subunit chloroplast [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 210.7 bits (535), Expect = 9.1e-51
Identity = 118/182 (64.84%), Postives = 124/182 (68.13%), Query Frame = 0


Query: 2   AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ--------- 61
           AVFARE G PI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ         
Sbjct: 279 AVFARELGAPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRV 338

Query: 62  --------SGSSASSFTGYSPLAYACSDRDLWR--------GDDSVLEFGRGTLGHPFFL 121
                    G    + T    L  A     +W         GDDSVL+FG GTLGHP+  
Sbjct: 339 LAKALRMSGGDHIHAGTVVGVLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWG- 398

Query: 122 NAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAM 156
           NAPGAVANRVALEACVQA  EGRDL   GNEIIREASKWSPELAAACEVWKEI+FEF AM
Sbjct: 399 NAPGAVANRVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEVWKEIKFEFAAM 458

[Close]

BLAST of PI0023057 vs. NCBI nr
Match: TKR74941.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Populus alba])

HSP 1 Score: 210.7 bits (535), Expect = 9.1e-51
Identity = 120/191 (62.83%), Postives = 127/191 (66.49%), Query Frame = 0


Query: 2   AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGSSAS--- 61
           A+FARE GVPI+MHDYL  GFTANTSLAHYCRDNGL LHIHRAM AVIDRQ         
Sbjct: 254 AIFARELGVPIVMHDYLTGGFTANTSLAHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRV 313

Query: 62  ----------------------SFTGYSPLAYACSDRDLWR--------GDDSVLEFGRG 121
                                 S  G  P+  A     +W         GDDSVL+FG G
Sbjct: 314 LAKALRMSGGDHIHPGTVVDWVSLPGVLPV--ASGGIHVWHMPALTEIFGDDSVLQFGGG 373

Query: 122 TLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVWKE 157
           TLGHP+  NAPGAVANRVALEACVQA  EGRDL   GNEIIREASKWSPELAAACEVWKE
Sbjct: 374 TLGHPWG-NAPGAVANRVALEACVQARNEGRDLAREGNEIIREASKWSPELAAACEVWKE 433

[Close]

BLAST of PI0023057 vs. NCBI nr
Match: KAF6138380.1 (hypothetical protein GIB67_037670 [Kingdonia uniflora])

HSP 1 Score: 208.0 bits (528), Expect = 5.9e-50
Identity = 120/193 (62.18%), Postives = 127/193 (65.80%), Query Frame = 0


Query: 2   AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQ--------- 61
           AVFARE GVPI+MHDYL  GFTANTSL+HYCRDNGL LHIHRAM AVIDRQ         
Sbjct: 254 AVFARELGVPIVMHDYLTGGFTANTSLSHYCRDNGLLLHIHRAMHAVIDRQKNHGIHFRV 313

Query: 62  --------------SGSSASSFTGYSP----LAYACSDRDLWR--------GDDSVLEFG 121
                         SG+      G       L  A     +W         GDDSVL+FG
Sbjct: 314 LAKALRMSGGDHIHSGTVVGKLEGERNHLRFLPVASGGIHVWHMPALTEIFGDDSVLQFG 373

Query: 122 RGTLGHPFFLNAPGAVANRVALEACVQACIEGRDL---GNEIIREASKWSPELAAACEVW 157
            GTLGHP+  NAPGAVANRVALEACVQA  EGRDL   GNEIIREA KWSPELAAACEVW
Sbjct: 374 GGTLGHPWG-NAPGAVANRVALEACVQARNEGRDLAREGNEIIREACKWSPELAAACEVW 433

[Close]

BLAST of PI0023057 vs. NCBI nr
Match: VAH75199.1 (unnamed protein product [Triticum turgidum subsp. durum])

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-48
Identity = 111/166 (66.87%), Postives = 120/166 (72.29%), Query Frame = 0


Query: 2   AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSGSSASSFT 61
           AVFARE GVPI+MHDYL  GFTANT+LAHYCRDNGL LHIHRAM AVIDRQ         
Sbjct: 43  AVFARELGVPIVMHDYLTGGFTANTTLAHYCRDNGLLLHIHRAMHAVIDRQKN---HGMP 102

Query: 62  GYSPLAYACSDRDLWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQ 121
           G  P+  A     +W         GDDSVL+FG GTLGHP+  NAPGA ANRVALEACVQ
Sbjct: 103 GVIPV--ALGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWG-NAPGATANRVALEACVQ 162

Query: 122 ACIEGRDL---GNEIIREASKWSPELAAACEVWKEIQFEFEAMDTL 157
           A  EG DL   GNEIIR A KWSPELAAACEVWK I+FEFE +DT+
Sbjct: 163 ARNEGHDLAREGNEIIRAACKWSPELAAACEVWKAIKFEFEPVDTI 202

[Close]

BLAST of PI0023057 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 187.2 bits (474), Expect = 1.0e-47
Identity = 116/223 (52.02%), Postives = 123/223 (55.16%), Query Frame = 0


Query: 2   AVFAREDGVPILMHDYLRRGFTANTSLAHYCRDNGLFLHIHRAMDAVIDRQSG------- 61
           AVFARE GVPI+MHDYL  GFTANTSL+HYCRDNGL LHIHRAM AVIDRQ         
Sbjct: 254 AVFARELGVPIVMHDYLTGGFTANTSLSHYCRDNGLLLHIHRAMHAVIDRQKNHGMHFRV 313

Query: 62  -----------------------SSASSFTGYSPLA---YACSDRD-------------- 121
                                      S  G+  L    Y   DR               
Sbjct: 314 LAKALRLSGGDHIHAGTVVGKLEGDRESTLGFVDLLRDDYVEKDRSRGIFFTQDWVSLPG 373

Query: 122 ----------LWR--------GDDSVLEFGRGTLGHPFFLNAPGAVANRVALEACVQACI 157
                     +W         GDDSVL+FG GTLGHP+  NAPGAVANRVALEACVQA  
Sbjct: 374 VLPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWG-NAPGAVANRVALEACVQARN 433

[Close]

BLAST of PI0023057 vs. TAIR 10
Match: AT2G07732.1 (Ribulose bisphosphate carboxylase large chain, catalytic domain )

HSP 1 Score: 54.3 bits (129), Expect = 1.0e-07
Identity = 25/29 (86.21%), Postives = 26/29 (89.66%), Query Frame = 0


Query: 2   AVFAREDGVPILMHDYLRRGFTANTSLAH 31
           AVFARE GVPI+MHDYL  GFTANTSLAH
Sbjct: 86  AVFARELGVPIVMHDYLTGGFTANTSLAH 114

The following BLAST results are available for this feature:

BLAST of PI0023057 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4GG89	9.5e-51	55.16	Ribulose bisphosphate carboxylase large chain OS=Phaseolus vulgaris OX=3885 GN=r...	[more]
P28442	9.5e-51	55.16	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Platytheca verticill...	[more]
Q05992	9.5e-51	55.16	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Polemonium reptans O...	[more]
Q31983	1.2e-50	54.71	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cornus florida OX=42...	[more]
Q32041	1.2e-50	54.71	Ribulose bisphosphate carboxylase large chain (Fragment) OS=Cornus oblonga OX=16...	[more]

BLAST of PI0023057 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1R3KTQ0	5.2e-52	65.92	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_00945 PE=4 ...	[more]
A0A4U5MY68	4.4e-51	62.83	Ribulose bisphosphate carboxylase large chain OS=Populus alba OX=43335 GN=D5086_...	[more]
A0A3S3PU74	4.4e-51	64.84	Ribulose bisphosphate carboxylase large chain OS=Cinnamomum micranthum f. kanehi...	[more]
A0A7J7L730	2.9e-50	62.18	Ribulose bisphosphate carboxylase large chain OS=Kingdonia uniflora OX=39325 GN=...	[more]
A0A446PLI2	5.4e-49	66.87	Uncharacterized protein OS=Triticum turgidum subsp. durum OX=4567 GN=TRITD_3Bv1G...	[more]

BLAST of PI0023057 vs. NCBI nr


Match Name	E-value	Identity	Description
OMP10484.1	1.1e-51	65.92	hypothetical protein CCACVL1_00945 [Corchorus capsularis]	[more]
RWR97768.1	9.1e-51	64.84	ribulose-15-bisphosphate carboxylase/oxygenase large subunit chloroplast [Cinnam...	[more]
TKR74941.1	9.1e-51	62.83	ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit [Populus alba]	[more]
KAF6138380.1	5.9e-50	62.18	hypothetical protein GIB67_037670 [Kingdonia uniflora]	[more]
VAH75199.1	1.1e-48	66.87	unnamed protein product [Triticum turgidum subsp. durum]	[more]

BLAST of PI0023057 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00490.1	1.0e-47	52.02	ribulose-bisphosphate carboxylases	[more]
AT2G07732.1	1.0e-07	86.21	Ribulose bisphosphate carboxylase large chain, catalytic domain	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	PFAM	PF00016	RuBisCO_large	coord: 78..143 e-value: 1.9E-9 score: 37.2 coord: 4..55 e-value: 1.7E-11 score: 43.9
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	GENE3D	3.20.20.110		coord: 1..70 e-value: 1.6E-13 score: 52.2 coord: 75..156 e-value: 5.3E-21 score: 76.8
IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	SUPERFAMILY	51649	RuBisCo, C-terminal domain	coord: 2..155
IPR033966	RuBisCO	PANTHER	PTHR42704	RIBULOSE BISPHOSPHATE CARBOXYLASE	coord: 78..155 coord: 2..53
None	No IPR available	PANTHER	PTHR42704:SF8	RIBULOSE BISPHOSPHATE CARBOXYLASE, LARGE SUBUNIT-RELATED	coord: 78..155
None	No IPR available	PANTHER	PTHR42704:SF8	RIBULOSE BISPHOSPHATE CARBOXYLASE, LARGE SUBUNIT-RELATED	coord: 2..53

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023057.1	PI0023057.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015977	carbon fixation
biological_process	GO:1901576	organic substance biosynthetic process
biological_process	GO:0015979	photosynthesis
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0009536	plastid
molecular_function	GO:0016829	lyase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0016491	oxidoreductase activity