PI0023049 (gene) Melon (PI 482460) v1

Overview


Name	PI0023049
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	methyl-CpG-binding domain-containing protein 5
Location	chr12: 23610241 .. 23613075 (+)
RNA-Seq Expression	PI0023049
Synteny	PI0023049

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGTGTTCTTAACGTTCCCTTTCCCGTTTCTTCTTCTTCTTCCCTCAAACCCCAAACCCACATGTCTGCTTCTGGAACTTCATTTCCGGACTCCGATTGGCCCCGTCCTCAAGATCCGACCCGACCCGACTTACCTTTCTCCCACCACCTCCCTCCTGATCCTCTCCTCTCCGCCGGCTCCTTCATCGACTCCTCCTCCTCCTCCGCCACCGCCACCTCCACCGTCCCTTCCCCAACCCTACCTTCCCGAGATCTTGACCGGACTCCTCGCAAAACCCCCCAAACTTCTTCCACTCGCCGATCTCCATTACGCCCCGACCCTCTCAACTCTTTCAATGGAGATTCTTCCCCTTCCAAAAAAGTCTCCGCTTCTAACTCTGCGTCTTCGAAATCTGCCTTGTCTGAACGGCCTAATTGGCTTCCCCCTGGCTGGGTTGTTGAAGATAGAGTTCGTTCCTCTGGTGCTACGGCTGGAACCGTCGATAAGGTGAATTGATTTCTTATCTCTTATCAGTTTTTAATTTTTTTAGTTGCTTCTTTGTAGTGGAGATTAATCTGTTTTGGTAATTAATTAGCCATGCAAAATAGAACAGGGGTTTAACGTCCTTTGAACTATTTTTCTTCTACTTATGAATAATTTTTTGTGATACCTATATTACGTTTGGAGCTTCGGATTAAAACATGAATTTGCCTTAAGTATTCATTAGCTCTTTGTTGTTAGCTCATCAATTTTGGGGGAAATGAGGTATATCAAGTAGTAAAGGGTTTAAGAACTACTATGGATTTGATCATCTGAAAAATGGATCATTAGCTGTATTCTGTGTTGAGTTGATGGGTGTTGCAGTTATTACGAAATCGTCAAACAAAGATTATAGCAAACGTAAAATAGAGTAGAATCGACTTACAAATTCATGTGGTTTACTAATAGTGTTTTAGCTATGCATCCACGGGACAAAAGAAGACTAATTTTATTAGAGAAAATGTTACAAAATACGAAATGAAAGACGTCTCTAGGATTAAAGAGTTTATATAGTGCCATGTACTTGGTCACTCGAAGGGCTGCATAATAGATCCAATGTACTCCAACAAGTTTTAGTTACCTGTTTGGGAATTAAGAAATGAAGGAATTCATTTCATATAAATTTTTTAAGGGAATTCTTTTGTCCTTTACTTGGTATGGTATTTAAGTATGTTCTGGTCCATGAATTATCCAAGCAATTCTGTCATGCAGTTAATGTAACAAGCTTTCTTGGTCCTTTCCTTTGGATGGTGAACAAGCCTTCACGAACTTCGATATAGATTTAGGTGCTTCATTGGATTTTGGTACGCTCTAGTTGGCTACTTACCATTCATATGAAATCAGTTAGGATAACAGAGTTTGGTTGATTAGGATGGAGATCATCATGGGAAAAAGAATAACAAAAATATGACGCTGGAGTTTAAGAGGGGAACGTGAATGTACCGAGACCACATCTAAATGAGAGAGATCCTGAGGATATGAATGTATGGTTAAGAAAAGCTTTAAAGAATTTAAAGTTGCTACCTATACCAACAATATTTGGATTCTTTTTTTAATTGTGCAGCTTATAGCCTTAATTGGGTATGTGACTACTACTGGGTGCTTGAATTGATATATGGTACTTCACTAGAAGTCATGTTTGAGATGGATTATACCTCAATTTCATATTTTTTTCAAGTTTAAAACAATGTTGGCATTGTCGATAGGCAAAACAACAAGCAATTTAAGTAAAGACACAAGTATCATATCGCAACTATTGAGTACTGAGTTTGAGTGTCGTATGGAAATTGCTTATGAATTGGTTGTTATTATTTTTTCTCATGCTGAATTAATTGGGAGCATGCTTGGGCCCATTTATTTCTTGAAGCTTCCTTTTCTTATTATCCTGTTTTAAATATTTATCAAACAAACAAACAGTAAAGAATGTCGAAAGAATCTAATCTAGCCCCATGTCCCTTGCAGTACTACTTTGACCCAGTCTCAAACCGTCGATTCCGGTCTAAGATCGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGGAAGAAATCATTAGATGGTAATCCGACGGTGAGTTGAAAGCTAACATTCCTTCTTTGGCACCCAATGAGGTATTCAGATCTCTCATCCATTTTTTTCGCTTTCCTGATTTGCAACTCTGCAGTCTACCGATGGCTCCGAAGAACCCAAGGGCAAGAAATCTTCCAGCAATGCTAAATCTGCTCCTTTAAACTTCGACTTCTCCAATGTACCCAAAAAGGTCGAATGGGTTCTCACTGACCCATCTCAGGATGCTTGGACACCCTTTATCGACAACGAGAAAGTACCTGAATCTACTAAACGCGAATGGGTAGGAGCTTTTCAACTCCTTGGCCGATCGAAAGTTTAAAGATAGAAGGCAACTCCATCCCATTTGGACATTTTTTGAGACAACCAACCCATTCAGGGAAGAACTATTCTCCCTCCCTCCCTCCCTCTCTCTAATGGCTTCCCATCTCCAAATTCTTTTGGTCTTTTTTTTCTTCTTTTTTTGGAAGGAGCAGGCGAGGTTGAGGGGGAAGTGTTGTGAAAAAGCAGATTTGGTTAGGAAAAATTACTGGAAAAAACATGACTTTATCTAACTGACTATGTCTTGGACTGTGGAAGAAGTGATCAAATTTGTGTAGATGAGGGCTGCTCTGTTCATTCTCAACAATCAAATGTATTTGAATGAGGGGCTACTTCATTTTTATTCTATGCTCTTGCTCTTCATTTTGATCTAGATTTGTATTCCTTTTATGATTCAAATTTGATATTTTTGTGGCAATAA

mRNA sequence

GTTGTGTTCTTAACGTTCCCTTTCCCGTTTCTTCTTCTTCTTCCCTCAAACCCCAAACCCACATGTCTGCTTCTGGAACTTCATTTCCGGACTCCGATTGGCCCCGTCCTCAAGATCCGACCCGACCCGACTTACCTTTCTCCCACCACCTCCCTCCTGATCCTCTCCTCTCCGCCGGCTCCTTCATCGACTCCTCCTCCTCCTCCGCCACCGCCACCTCCACCGTCCCTTCCCCAACCCTACCTTCCCGAGATCTTGACCGGACTCCTCGCAAAACCCCCCAAACTTCTTCCACTCGCCGATCTCCATTACGCCCCGACCCTCTCAACTCTTTCAATGGAGATTCTTCCCCTTCCAAAAAAGTCTCCGCTTCTAACTCTGCGTCTTCGAAATCTGCCTTGTCTGAACGGCCTAATTGGCTTCCCCCTGGCTGGGTTGTTGAAGATAGAGTTCGTTCCTCTGGTGCTACGGCTGGAACCGTCGATAAGTACTACTTTGACCCAGTCTCAAACCGTCGATTCCGGTCTAAGATCGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGGAAGAAATCATTAGATGGTAATCCGACGTCTACCGATGGCTCCGAAGAACCCAAGGGCAAGAAATCTTCCAGCAATGCTAAATCTGCTCCTTTAAACTTCGACTTCTCCAATGTACCCAAAAAGGTCGAATGGGTTCTCACTGACCCATCTCAGGATGCTTGGACACCCTTTATCGACAACGAGAAAGTACCTGAATCTACTAAACGCGAATGGGTAGGAGCTTTTCAACTCCTTGGCCGATCGAAAGTTTAAAGATAGAAGGCAACTCCATCCCATTTGGACATTTTTTGAGACAACCAACCCATTCAGGGAAGAACTATTCTCCCTCCCTCCCTCCCTCTCTCTAATGGCTTCCCATCTCCAAATTCTTTTGGTCTTTTTTTTCTTCTTTTTTTGGAAGGAGCAGGCGAGGTTGAGGGGGAAGTGTTGTGAAAAAGCAGATTTGGTTAGGAAAAATTACTGGAAAAAACATGACTTTATCTAACTGACTATGTCTTGGACTGTGGAAGAAGTGATCAAATTTGTGTAGATGAGGGCTGCTCTGTTCATTCTCAACAATCAAATGTATTTGAATGAGGGGCTACTTCATTTTTATTCTATGCTCTTGCTCTTCATTTTGATCTAGATTTGTATTCCTTTTATGATTCAAATTTGATATTTTTGTGGCAATAA

Coding sequence (CDS)

ATGTCTGCTTCTGGAACTTCATTTCCGGACTCCGATTGGCCCCGTCCTCAAGATCCGACCCGACCCGACTTACCTTTCTCCCACCACCTCCCTCCTGATCCTCTCCTCTCCGCCGGCTCCTTCATCGACTCCTCCTCCTCCTCCGCCACCGCCACCTCCACCGTCCCTTCCCCAACCCTACCTTCCCGAGATCTTGACCGGACTCCTCGCAAAACCCCCCAAACTTCTTCCACTCGCCGATCTCCATTACGCCCCGACCCTCTCAACTCTTTCAATGGAGATTCTTCCCCTTCCAAAAAAGTCTCCGCTTCTAACTCTGCGTCTTCGAAATCTGCCTTGTCTGAACGGCCTAATTGGCTTCCCCCTGGCTGGGTTGTTGAAGATAGAGTTCGTTCCTCTGGTGCTACGGCTGGAACCGTCGATAAGTACTACTTTGACCCAGTCTCAAACCGTCGATTCCGGTCTAAGATCGAGGTTCTTTACTTTCTGGAAACAGGAACATTAAGGAAACGGAAGAAATCATTAGATGGTAATCCGACGTCTACCGATGGCTCCGAAGAACCCAAGGGCAAGAAATCTTCCAGCAATGCTAAATCTGCTCCTTTAAACTTCGACTTCTCCAATGTACCCAAAAAGGTCGAATGGGTTCTCACTGACCCATCTCAGGATGCTTGGACACCCTTTATCGACAACGAGAAAGTACCTGAATCTACTAAACGCGAATGGGTAGGAGCTTTTCAACTCCTTGGCCGATCGAAAGTTTAA

Protein sequence

MSASGTSFPDSDWPRPQDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATSTVPSPTLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNPTSTDGSEEPKGKKSSSNAKSAPLNFDFSNVPKKVEWVLTDPSQDAWTPFIDNEKVPESTKREWVGAFQLLGRSKV

Homology

[Close]

BLAST of PI0023049 vs. ExPASy Swiss-Prot
Match: Q9SNC0 (Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=MBD5 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-28
Identity = 68/161 (42.24%), Postives = 96/161 (59.63%), Query Frame = 0


Query: 97  PSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSK 156
           P    +  +S S K A     NWLPP W  E RVR+SG  AGTVDK+Y++P++ R+FRSK
Sbjct: 12  PENPATPVDSKSRKRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSK 71

Query: 157 IEVLYFLETGTLRKRK-KSLDGNPTSTDGSE-------EPKGKKSSSNAKSAPLNFDFSN 216
            EVLY+LE GT +K+  K+ +   + ++ SE       + K  K  +     PLNFDF N
Sbjct: 72  NEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPPPKPLNFDFLN 131

Query: 217 VPKKVEWVLTDPSQDAWTPFIDNEKVPESTKREWVGAFQLL 250
           VP+KV W   + S++AW PFI + K+ ES  ++W   F L+
Sbjct: 132 VPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLV 172

[Close]

BLAST of PI0023049 vs. ExPASy Swiss-Prot
Match: Q9LTJ1 (Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 GN=MBD6 PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-28
Identity = 80/230 (34.78%), Postives = 125/230 (54.35%), Query Frame = 0


Query: 31  PPDPLLSAGSFIDSSSSSATATSTVPSPTLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNS 90
           PPDPLL++G+FI S+                   LD         SS +R P++     S
Sbjct: 10  PPDPLLASGAFISSAGDGT---------------LD---------SSAKRRPIQGGIGIS 69

Query: 91  FNGDS------SPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYY 150
            +G+S      + + +V+    + S+   +   NWLPPGW VED++R+SGATAG+VDKYY
Sbjct: 70  GSGESVRIGMANGTDQVNHQTESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSVDKYY 129

Query: 151 FDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDG---NPTSTDGSEEPKGKKSSS--NAKS 210
           ++P + R+FRS+ EVLY+LE GT ++  K  +    NP   +G    +  ++++      
Sbjct: 130 YEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTATVPPPPP 189

Query: 211 APLNFDFSNVPKKVEWVLTDPSQDAWTPFIDNEKVPESTKREWVGAFQLL 250
            PL+FDF N P KV W + +  ++ W P I + KV +S +R+W  AF  +
Sbjct: 190 PPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFI 215

[Close]

BLAST of PI0023049 vs. ExPASy TrEMBL
Match: A0A5D3BC42 (Methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold194G002210 PE=4 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.1e-131
Identity = 247/256 (96.48%), Postives = 250/256 (97.66%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPQDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATAT--STVPSP 60
           MSASGTS PDSDWPRP DPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATAT  STVPSP
Sbjct: 1   MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 60

Query: 61  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 120
           TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN
Sbjct: 61  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 120

Query: 121 WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN 180
           WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN
Sbjct: 121 WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN 180

Query: 181 PTSTDGSEEPKGKKSSSNAKSAPLNFDFSNVPKKVEWVLTDPSQDAWTPFIDNEKVPEST 240
           P+STDGS+EPKGKKSSSNAKSAPLNFDF NVP+KVEWVLTDPSQDAWTPFIDNEKVPEST
Sbjct: 181 PSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST 240

Query: 241 KREWVGAFQLLGRSKV 255
           K EWVGAFQLLGRSKV
Sbjct: 241 KCEWVGAFQLLGRSKV 256

[Close]

BLAST of PI0023049 vs. ExPASy TrEMBL
Match: A0A1S3C6A2 (methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo OX=3656 GN=LOC103497158 PE=4 SV=1)

HSP 1 Score: 479.2 bits (1232), Expect = 1.1e-131
Identity = 247/256 (96.48%), Postives = 250/256 (97.66%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPQDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATAT--STVPSP 60
           MSASGTS PDSDWPRP DPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATAT  STVPSP
Sbjct: 24  MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 83

Query: 61  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 120
           TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN
Sbjct: 84  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 143

Query: 121 WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN 180
           WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN
Sbjct: 144 WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN 203

Query: 181 PTSTDGSEEPKGKKSSSNAKSAPLNFDFSNVPKKVEWVLTDPSQDAWTPFIDNEKVPEST 240
           P+STDGS+EPKGKKSSSNAKSAPLNFDF NVP+KVEWVLTDPSQDAWTPFIDNEKVPEST
Sbjct: 204 PSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST 263

Query: 241 KREWVGAFQLLGRSKV 255
           K EWVGAFQLLGRSKV
Sbjct: 264 KCEWVGAFQLLGRSKV 279

[Close]

BLAST of PI0023049 vs. ExPASy TrEMBL
Match: A0A0A0LXE4 (MBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G522010 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 1.0e-129
Identity = 244/255 (95.69%), Postives = 248/255 (97.25%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPQDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSAT-ATSTVPSPT 60
           MSASGTSFPDSDWPRP DPTRPDLPFSHHLPPDPLLSAGSFIDSS+SS T ATSTVPSPT
Sbjct: 24  MSASGTSFPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 83

Query: 61  LPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPNW 120
           LPSRDLDRTPRKTP TSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPNW
Sbjct: 84  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPNW 143

Query: 121 LPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNP 180
           LPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNP
Sbjct: 144 LPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNP 203

Query: 181 TSTDGSEEPKGKKSSSNAKSAPLNFDFSNVPKKVEWVLTDPSQDAWTPFIDNEKVPESTK 240
           +STD SEEPKGKKSSSNAK+APLNFDF NVP+KVEWVLTDPSQDAWTPFIDNEKVPESTK
Sbjct: 204 SSTDVSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPESTK 263

Query: 241 REWVGAFQLLGRSKV 255
            EWVGAFQLLGRSKV
Sbjct: 264 CEWVGAFQLLGRSKV 278

[Close]

BLAST of PI0023049 vs. ExPASy TrEMBL
Match: A0A6J1KC76 (methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111493004 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.3e-97
Identity = 203/266 (76.32%), Postives = 214/266 (80.45%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPQDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATSTVPSPTL 60
           MSASGTSFPD DWPR Q  TRPDLP  HH PPDPLLS+GSFIDSS++      T+PS   
Sbjct: 1   MSASGTSFPDPDWPR-QGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARC---GTLPSSPD 60

Query: 61  PSRDLDRTPRKTPQTSSTRRSPLRPDPLN----------SFNGDSSPSKKVSAS--NSAS 120
            +RDLD   RK P TS+T RSPL  DPLN            NGDSS  KKVSAS    AS
Sbjct: 61  YARDLDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSASRGTDAS 120

Query: 121 SKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTL 180
            KSALS+RPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGTL
Sbjct: 121 PKSALSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTL 180

Query: 181 RKRKKSLDGNPTSTDGSEEPKGKKSSSNAKSAPLNFDFSNVPKKVEWVLTDPSQDAWTPF 240
           RKRKKSLDGN  S DGSEEPK KKSSSNAKSAPLNFDF NVP+KVEWVLTDPSQ+AWTPF
Sbjct: 181 RKRKKSLDGNAMSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPF 240

Query: 241 IDNEKVPESTKREWVGAFQLLGRSKV 255
           I+NEKVPESTKREWV AFQLLGRSKV
Sbjct: 241 INNEKVPESTKREWVAAFQLLGRSKV 262

[Close]

BLAST of PI0023049 vs. ExPASy TrEMBL
Match: A0A6J1GAC7 (methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111452236 PE=4 SV=1)

HSP 1 Score: 364.8 bits (935), Expect = 3.0e-97
Identity = 202/266 (75.94%), Postives = 213/266 (80.08%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPQDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATSTVPSPTL 60
           MSASGTSFPD DWPR Q  TRPDLP  HH PPDPLLS+GSFIDSS++      T+PS   
Sbjct: 1   MSASGTSFPDPDWPR-QGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARC---GTLPSSPD 60

Query: 61  PSRDLDRTPRKTPQTSSTRRSPLRPDPLN----------SFNGDSSPSKKVSAS--NSAS 120
            +RDLD   R  P TS+T RSPL  DPLN            NGDSS  KKVSAS    AS
Sbjct: 61  YARDLDGNHRNKPDTSATLRSPLPADPLNPKKLPPDSPTPGNGDSSAPKKVSASRGTDAS 120

Query: 121 SKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTL 180
            KSALSERPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGTL
Sbjct: 121 PKSALSERPNWLPPGWVVEDRVRASGATAGTVDKYYFDPKSGRRFRSKIEVLYFLETGTL 180

Query: 181 RKRKKSLDGNPTSTDGSEEPKGKKSSSNAKSAPLNFDFSNVPKKVEWVLTDPSQDAWTPF 240
           RKRKKSLDGN  S DGSEEPK KKSSSNAKSAPLNFDF NVP+KVEWVLTDPSQ+AWTPF
Sbjct: 181 RKRKKSLDGNVKSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPF 240

Query: 241 IDNEKVPESTKREWVGAFQLLGRSKV 255
           I+NEKVPESTKREWV AFQLLGRSK+
Sbjct: 241 INNEKVPESTKREWVAAFQLLGRSKI 262

[Close]

BLAST of PI0023049 vs. NCBI nr
Match: KAA0067742.1 (methyl-CpG-binding domain-containing protein 5 [Cucumis melo var. makuwa] >TYJ97402.1 methyl-CpG-binding domain-containing protein 5 [Cucumis melo var. makuwa])

HSP 1 Score: 479.2 bits (1232), Expect = 2.2e-131
Identity = 247/256 (96.48%), Postives = 250/256 (97.66%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPQDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATAT--STVPSP 60
           MSASGTS PDSDWPRP DPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATAT  STVPSP
Sbjct: 1   MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 60

Query: 61  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 120
           TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN
Sbjct: 61  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 120

Query: 121 WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN 180
           WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN
Sbjct: 121 WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN 180

Query: 181 PTSTDGSEEPKGKKSSSNAKSAPLNFDFSNVPKKVEWVLTDPSQDAWTPFIDNEKVPEST 240
           P+STDGS+EPKGKKSSSNAKSAPLNFDF NVP+KVEWVLTDPSQDAWTPFIDNEKVPEST
Sbjct: 181 PSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST 240

Query: 241 KREWVGAFQLLGRSKV 255
           K EWVGAFQLLGRSKV
Sbjct: 241 KCEWVGAFQLLGRSKV 256

[Close]

BLAST of PI0023049 vs. NCBI nr
Match: XP_008457481.2 (PREDICTED: methyl-CpG-binding domain-containing protein 5 [Cucumis melo])

HSP 1 Score: 479.2 bits (1232), Expect = 2.2e-131
Identity = 247/256 (96.48%), Postives = 250/256 (97.66%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPQDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATAT--STVPSP 60
           MSASGTS PDSDWPRP DPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATAT  STVPSP
Sbjct: 24  MSASGTSLPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATPISTVPSP 83

Query: 61  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 120
           TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN
Sbjct: 84  TLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPN 143

Query: 121 WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN 180
           WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN
Sbjct: 144 WLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGN 203

Query: 181 PTSTDGSEEPKGKKSSSNAKSAPLNFDFSNVPKKVEWVLTDPSQDAWTPFIDNEKVPEST 240
           P+STDGS+EPKGKKSSSNAKSAPLNFDF NVP+KVEWVLTDPSQDAWTPFIDNEKVPEST
Sbjct: 204 PSSTDGSDEPKGKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPEST 263

Query: 241 KREWVGAFQLLGRSKV 255
           K EWVGAFQLLGRSKV
Sbjct: 264 KCEWVGAFQLLGRSKV 279

[Close]

BLAST of PI0023049 vs. NCBI nr
Match: XP_011658162.2 (methyl-CpG-binding domain-containing protein 5 [Cucumis sativus] >KGN66151.2 hypothetical protein Csa_019834 [Cucumis sativus])

HSP 1 Score: 475.7 bits (1223), Expect = 2.5e-130
Identity = 245/255 (96.08%), Postives = 249/255 (97.65%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPQDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSAT-ATSTVPSPT 60
           MSASGTSFPDSDWPRP DPTRPDLPFSHHLPPDPLLSAGSFIDSS+SS T ATSTVPSPT
Sbjct: 24  MSASGTSFPDSDWPRPHDPTRPDLPFSHHLPPDPLLSAGSFIDSSTSSPTPATSTVPSPT 83

Query: 61  LPSRDLDRTPRKTPQTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPNW 120
           LPSRDLDRTPRKTP TSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPNW
Sbjct: 84  LPSRDLDRTPRKTPLTSSTRRSPLRPDPLNSFNGDSSPSKKVSASNSASSKSALSERPNW 143

Query: 121 LPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNP 180
           LPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNP
Sbjct: 144 LPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDGNP 203

Query: 181 TSTDGSEEPKGKKSSSNAKSAPLNFDFSNVPKKVEWVLTDPSQDAWTPFIDNEKVPESTK 240
           +STD SEEPKGKKSSSNAK+APLNFDF NVP+KVEWVLTDPSQDAWTPFIDNEKVPESTK
Sbjct: 204 SSTDVSEEPKGKKSSSNAKTAPLNFDFFNVPEKVEWVLTDPSQDAWTPFIDNEKVPESTK 263

Query: 241 REWVGAFQLLGRSKV 255
           REWVGAFQLLGRSKV
Sbjct: 264 REWVGAFQLLGRSKV 278

[Close]

BLAST of PI0023049 vs. NCBI nr
Match: XP_038893740.1 (LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 6 [Benincasa hispida])

HSP 1 Score: 403.7 bits (1036), Expect = 1.2e-108
Identity = 218/271 (80.44%), Postives = 230/271 (84.87%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPQDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATSTVPSPTL 60
           MSASGTSFPD DWPR QDPTRPDLPFSHHLPPDPLL AGSF+DSSSS+      +P+PTL
Sbjct: 26  MSASGTSFPDPDWPR-QDPTRPDLPFSHHLPPDPLLDAGSFVDSSSSA------LPAPTL 85

Query: 61  PSRDLDRTPRKTPQTSSTRRSPLRPDPLNSF----------NGDSSPSKKVSASNS---- 120
           PSRDLDRTPRK  ++SST RSPLR  PLNSF          NGDS  +KKVS S S    
Sbjct: 86  PSRDLDRTPRKKAESSSTPRSPLRAGPLNSFNLPPDSSAPRNGDSPATKKVSLSASSSRG 145

Query: 121 ---ASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFL 180
              AS KSALSERPNWLPPGWVV+DRVRSSGATAGTVDKYYFDP+SNRRFRSKIEVLYFL
Sbjct: 146 TTDASLKSALSERPNWLPPGWVVQDRVRSSGATAGTVDKYYFDPISNRRFRSKIEVLYFL 205

Query: 181 ETGTLRKRKKSLDGNPTSTDGSEEPKGKKSSSNAKSAPLNFDFSNVPKKVEWVLTDPSQD 240
           ETGTLRKRKKSLDGNPTSTDGSEEPK KKSSSNAKSAPLNFDF NVP+KVEWVLTDPS+D
Sbjct: 206 ETGTLRKRKKSLDGNPTSTDGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSKD 265

Query: 241 AWTPFIDNEKVPESTKREWVGAFQLLGRSKV 255
           AWTPFI +EKV ESTKR WVGAFQLLGRSKV
Sbjct: 266 AWTPFIGSEKVRESTKRAWVGAFQLLGRSKV 289

[Close]

BLAST of PI0023049 vs. NCBI nr
Match: XP_022998335.1 (methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 365.9 bits (938), Expect = 2.8e-97
Identity = 203/266 (76.32%), Postives = 214/266 (80.45%), Query Frame = 0


Query: 1   MSASGTSFPDSDWPRPQDPTRPDLPFSHHLPPDPLLSAGSFIDSSSSSATATSTVPSPTL 60
           MSASGTSFPD DWPR Q  TRPDLP  HH PPDPLLS+GSFIDSS++      T+PS   
Sbjct: 1   MSASGTSFPDPDWPR-QGSTRPDLPSPHHFPPDPLLSSGSFIDSSTARC---GTLPSSPD 60

Query: 61  PSRDLDRTPRKTPQTSSTRRSPLRPDPLN----------SFNGDSSPSKKVSAS--NSAS 120
            +RDLD   RK P TS+T RSPL  DPLN            NGDSS  KKVSAS    AS
Sbjct: 61  YARDLDGNHRKKPDTSATLRSPLPADPLNPKKLAPDSPTPGNGDSSAPKKVSASRGTDAS 120

Query: 121 SKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEVLYFLETGTL 180
            KSALS+RPNWLPPGWVVEDRVR+SGATAGTVDKYYFDP S RRFRSKIEVLYFLETGTL
Sbjct: 121 PKSALSDRPNWLPPGWVVEDRVRASGATAGTVDKYYFDPNSGRRFRSKIEVLYFLETGTL 180

Query: 181 RKRKKSLDGNPTSTDGSEEPKGKKSSSNAKSAPLNFDFSNVPKKVEWVLTDPSQDAWTPF 240
           RKRKKSLDGN  S DGSEEPK KKSSSNAKSAPLNFDF NVP+KVEWVLTDPSQ+AWTPF
Sbjct: 181 RKRKKSLDGNAMSADGSEEPKSKKSSSNAKSAPLNFDFFNVPEKVEWVLTDPSQEAWTPF 240

Query: 241 IDNEKVPESTKREWVGAFQLLGRSKV 255
           I+NEKVPESTKREWV AFQLLGRSKV
Sbjct: 241 INNEKVPESTKREWVAAFQLLGRSKV 262

[Close]

BLAST of PI0023049 vs. TAIR 10
Match: AT3G46580.1 (methyl-CPG-binding domain protein 5 )

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-29
Identity = 68/161 (42.24%), Postives = 96/161 (59.63%), Query Frame = 0


Query: 97  PSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSK 156
           P    +  +S S K A     NWLPP W  E RVR+SG  AGTVDK+Y++P++ R+FRSK
Sbjct: 12  PENPATPVDSKSRKRATPGDDNWLPPDWRTEIRVRTSGTKAGTVDKFYYEPITGRKFRSK 71

Query: 157 IEVLYFLETGTLRKRK-KSLDGNPTSTDGSE-------EPKGKKSSSNAKSAPLNFDFSN 216
            EVLY+LE GT +K+  K+ +   + ++ SE       + K  K  +     PLNFDF N
Sbjct: 72  NEVLYYLEHGTPKKKSVKTAENGDSHSEHSEGRGSARRQTKSNKKVTEPPPKPLNFDFLN 131

Query: 217 VPKKVEWVLTDPSQDAWTPFIDNEKVPESTKREWVGAFQLL 250
           VP+KV W   + S++AW PFI + K+ ES  ++W   F L+
Sbjct: 132 VPEKVTWTGINGSEEAWLPFIGDYKIQESVSQDWDRVFTLV 172

[Close]

BLAST of PI0023049 vs. TAIR 10
Match: AT5G59380.1 (methyl-CPG-binding domain 6 )

HSP 1 Score: 127.5 bits (319), Expect = 1.5e-29
Identity = 80/230 (34.78%), Postives = 125/230 (54.35%), Query Frame = 0


Query: 31  PPDPLLSAGSFIDSSSSSATATSTVPSPTLPSRDLDRTPRKTPQTSSTRRSPLRPDPLNS 90
           PPDPLL++G+FI S+                   LD         SS +R P++     S
Sbjct: 10  PPDPLLASGAFISSAGDGT---------------LD---------SSAKRRPIQGGIGIS 69

Query: 91  FNGDS------SPSKKVSASNSASSKSALSERPNWLPPGWVVEDRVRSSGATAGTVDKYY 150
            +G+S      + + +V+    + S+   +   NWLPPGW VED++R+SGATAG+VDKYY
Sbjct: 70  GSGESVRIGMANGTDQVNHQTESKSRKRAAPGDNWLPPGWRVEDKIRTSGATAGSVDKYY 129

Query: 151 FDPVSNRRFRSKIEVLYFLETGTLRKRKKSLDG---NPTSTDGSEEPKGKKSSS--NAKS 210
           ++P + R+FRS+ EVLY+LE GT ++  K  +    NP   +G    +  ++++      
Sbjct: 130 YEPNTGRKFRSRTEVLYYLEHGTSKRGTKKAENTYFNPDHFEGQGSNRVTRTATVPPPPP 189

Query: 211 APLNFDFSNVPKKVEWVLTDPSQDAWTPFIDNEKVPESTKREWVGAFQLL 250
            PL+FDF N P KV W + +  ++ W P I + KV +S +R+W  AF  +
Sbjct: 190 PPLDFDFKNPPDKVSWSMANAGEEGWIPNIGDVKVQDSVRRDWSTAFTFI 215

[Close]

BLAST of PI0023049 vs. TAIR 10
Match: AT5G59800.1 (methyl-CPG-binding domain 7 )

HSP 1 Score: 45.4 bits (106), Expect = 7.7e-05
Identity = 38/128 (29.69%), Postives = 57/128 (44.53%), Query Frame = 0


Query: 120 LPPGWVVEDRVRSSGATAGTVDKYYFDPVSNRRFRSKIEV-LYFLETGTLRKRKKSLDGN 179
           LP GW+VE++ R S   +  +D+ Y +P +  +FRS   V  Y +  G +     +LD  
Sbjct: 182 LPDGWIVEEKPRRS---SSHIDRSYIEPGTGNKFRSMAAVERYLISVGNI-----TLDS- 241

Query: 180 PTSTDGSEEPKGKKSSSNAKSAPLNFDFSNVPKKVEWVLTDPSQDAWTPFIDNEKVPEST 239
             S   SE      + +  +      D  N PKKV+WVLT    + +T  +    V    
Sbjct: 242 -VSMVHSERLPLLMNRNGIRFQSEVID-PNPPKKVKWVLTGSGGNMFTANVRGSNVSSLV 298

Query: 240 KREWVGAF 247
           K  W  AF
Sbjct: 302 KHTWSEAF 298

The following BLAST results are available for this feature:

BLAST of PI0023049 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SNC0	2.2e-28	42.24	Methyl-CpG-binding domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LTJ1	2.2e-28	34.78	Methyl-CpG-binding domain-containing protein 6 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of PI0023049 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BC42	1.1e-131	96.48	Methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3C6A2	1.1e-131	96.48	methyl-CpG-binding domain-containing protein 5 OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A0A0LXE4	1.0e-129	95.69	MBD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G522010 PE=4 SV...	[more]
A0A6J1KC76	1.3e-97	76.32	methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita maxi...	[more]
A0A6J1GAC7	3.0e-97	75.94	methyl-CpG-binding domain-containing protein 5-like isoform X1 OS=Cucurbita mosc...	[more]

BLAST of PI0023049 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067742.1	2.2e-131	96.48	methyl-CpG-binding domain-containing protein 5 [Cucumis melo var. makuwa] >TYJ97...	[more]
XP_008457481.2	2.2e-131	96.48	PREDICTED: methyl-CpG-binding domain-containing protein 5 [Cucumis melo]	[more]
XP_011658162.2	2.5e-130	96.08	methyl-CpG-binding domain-containing protein 5 [Cucumis sativus] >KGN66151.2 hyp...	[more]
XP_038893740.1	1.2e-108	80.44	LOW QUALITY PROTEIN: methyl-CpG-binding domain-containing protein 6 [Benincasa h...	[more]
XP_022998335.1	2.8e-97	76.32	methyl-CpG-binding domain-containing protein 5-like isoform X1 [Cucurbita maxima...	[more]

BLAST of PI0023049 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G46580.1	1.5e-29	42.24	methyl-CPG-binding domain protein 5	[more]
AT5G59380.1	1.5e-29	34.78	methyl-CPG-binding domain 6	[more]
AT5G59800.1	7.7e-05	29.69	methyl-CPG-binding domain 7	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001739	Methyl-CpG DNA binding	PFAM	PF01429	MBD	coord: 113..212 e-value: 1.4E-13 score: 50.3
IPR001739	Methyl-CpG DNA binding	PROSITE	PS50982	MBD	coord: 110..182 score: 14.415644
None	No IPR available	GENE3D	3.30.890.10		coord: 88..214 e-value: 1.1E-20 score: 75.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 172..203
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..132
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 71..115
None	No IPR available	PANTHER	PTHR12396:SF46	METHYL-CPG BINDING DOMAIN PROTEIN-LIKE, ISOFORM C	coord: 94..240
None	No IPR available	PANTHER	PTHR12396	METHYL-CPG BINDING PROTEIN, MBD	coord: 94..240
IPR016177	DNA-binding domain superfamily	SUPERFAMILY	54171	DNA-binding domain	coord: 103..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0023049.1	PI0023049.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding