PI0022968 (gene) Melon (PI 482460) v1

Overview


Name	PI0022968
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr03: 23942866 .. 23943069 (-)
RNA-Seq Expression	PI0022968
Synteny	PI0022968

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATGTTGTCTACTGCACAACCTCATCAATAGGGAGATGACTAACGCTGAAATTCTGGAGGATTACTACAAGGGTGATTCGACATACGCCACAACTGCCAATGACGACATTCATTATATTGAGACCTCAAATGAATGGAGTCAGTGGCGGGATGATCTAGCCGAAGAAATGTTCAGCGATTGGGAGTTGCGTAATCAGTAA

mRNA sequence

ATGGCATGTTGTCTACTGCACAACCTCATCAATAGGGAGATGACTAACGCTGAAATTCTGGAGGATTACTACAAGGGTGATTCGACATACGCCACAACTGCCAATGACGACATTCATTATATTGAGACCTCAAATGAATGGAGTCAGTGGCGGGATGATCTAGCCGAAGAAATGTTCAGCGATTGGGAGTTGCGTAATCAGTAA

Coding sequence (CDS)

ATGGCATGTTGTCTACTGCACAACCTCATCAATAGGGAGATGACTAACGCTGAAATTCTGGAGGATTACTACAAGGGTGATTCGACATACGCCACAACTGCCAATGACGACATTCATTATATTGAGACCTCAAATGAATGGAGTCAGTGGCGGGATGATCTAGCCGAAGAAATGTTCAGCGATTGGGAGTTGCGTAATCAGTAA

Protein sequence

MACCLLHNLINREMTNAEILEDYYKGDSTYATTANDDIHYIETSNEWSQWRDDLAEEMFSDWELRNQ

Homology

[Close]

BLAST of PI0022968 vs. ExPASy TrEMBL
Match: A0A5D3BL48 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold562G00970 PE=4 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.3e-23
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNAEILEDYYKGDSTYATTANDDIHYIETSNEWSQWRDDLAEEMFS 60
           +ACCLLHNLINREMTN +I ++  + DST+ATT  DDIHYIETSNEWSQWRDDLAEEMFS
Sbjct: 148 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFS 207

Query: 61  DWELRNQ 68
           DWELRNQ
Sbjct: 208 DWELRNQ 214

[Close]

BLAST of PI0022968 vs. ExPASy TrEMBL
Match: A0A5A7VJX3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold40G001490 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 8.3e-23
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNAEILEDYYKGDSTYATTANDDIHYIETSNEWSQWRDDLAEEMFS 60
           +ACCLLHNLINREMTN +I ++  + DST+ATT  DDIHYIETSNEWSQWRDDLAEEMFS
Sbjct: 241 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFS 300

Query: 61  DWELRNQ 68
           DWELRNQ
Sbjct: 301 DWELRNQ 307

[Close]

BLAST of PI0022968 vs. ExPASy TrEMBL
Match: A0A5D3D9Z3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00220 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-22
Identity = 53/67 (79.10%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNAEILEDYYKGDSTYATTANDDIHYIETSNEWSQWRDDLAEEMFS 60
           +ACCLLHNLINREMTN +I ++  + DST+ATTA DDIHYIETSNEWSQWRDDLAEEMF+
Sbjct: 300 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFT 359

Query: 61  DWELRNQ 68
           +WELRNQ
Sbjct: 360 EWELRNQ 366

[Close]

BLAST of PI0022968 vs. ExPASy TrEMBL
Match: A0A5A7TWH8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001380 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-22
Identity = 53/67 (79.10%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNAEILEDYYKGDSTYATTANDDIHYIETSNEWSQWRDDLAEEMFS 60
           +ACCLLHNLINREMTN +I ++  + DST+ATTA DDIHYIETSNEWSQWRDDLAEEMF+
Sbjct: 322 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFT 381

Query: 61  DWELRNQ 68
           +WELRNQ
Sbjct: 382 EWELRNQ 388

[Close]

BLAST of PI0022968 vs. ExPASy TrEMBL
Match: A0A5A7UGH9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00700 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.9e-22
Identity = 53/67 (79.10%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNAEILEDYYKGDSTYATTANDDIHYIETSNEWSQWRDDLAEEMFS 60
           +ACCLLHNLINREMTN +I ++  + DST+ATTA DDIHYIETSNEWSQWRDDLAEEMF+
Sbjct: 205 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFT 264

Query: 61  DWELRNQ 68
           +WELRNQ
Sbjct: 265 EWELRNQ 271

[Close]

BLAST of PI0022968 vs. NCBI nr
Match: KAA0067470.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 1.7e-22
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNAEILEDYYKGDSTYATTANDDIHYIETSNEWSQWRDDLAEEMFS 60
           +ACCLLHNLINREMTN +I ++  + DST+ATT  DDIHYIETSNEWSQWRDDLAEEMFS
Sbjct: 241 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFS 300

Query: 61  DWELRNQ 68
           DWELRNQ
Sbjct: 301 DWELRNQ 307

[Close]

BLAST of PI0022968 vs. NCBI nr
Match: TYJ99699.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 115.5 bits (288), Expect = 1.7e-22
Identity = 54/67 (80.60%), Postives = 60/67 (89.55%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNAEILEDYYKGDSTYATTANDDIHYIETSNEWSQWRDDLAEEMFS 60
           +ACCLLHNLINREMTN +I ++  + DST+ATT  DDIHYIETSNEWSQWRDDLAEEMFS
Sbjct: 148 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTTADDIHYIETSNEWSQWRDDLAEEMFS 207

Query: 61  DWELRNQ 68
           DWELRNQ
Sbjct: 208 DWELRNQ 214

[Close]

BLAST of PI0022968 vs. NCBI nr
Match: KAA0065286.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 3.8e-22
Identity = 53/67 (79.10%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNAEILEDYYKGDSTYATTANDDIHYIETSNEWSQWRDDLAEEMFS 60
           +ACCLLHNLINREMTN +I ++  + DST+ATTA DDIHYIETSNEWSQWRDDLAEEMF+
Sbjct: 322 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFT 381

Query: 61  DWELRNQ 68
           +WELRNQ
Sbjct: 382 EWELRNQ 388

[Close]

BLAST of PI0022968 vs. NCBI nr
Match: KAA0048281.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 3.8e-22
Identity = 53/67 (79.10%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNAEILEDYYKGDSTYATTANDDIHYIETSNEWSQWRDDLAEEMFS 60
           +ACCLLHNLINREMTN +I ++  + DST+ATTA DDIHYIETSNEWSQWRDDLAEEMF+
Sbjct: 256 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFT 315

Query: 61  DWELRNQ 68
           +WELRNQ
Sbjct: 316 EWELRNQ 322

[Close]

BLAST of PI0022968 vs. NCBI nr
Match: KAA0068124.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 114.4 bits (285), Expect = 3.8e-22
Identity = 53/67 (79.10%), Postives = 61/67 (91.04%), Query Frame = 0


Query: 1   MACCLLHNLINREMTNAEILEDYYKGDSTYATTANDDIHYIETSNEWSQWRDDLAEEMFS 60
           +ACCLLHNLINREMTN +I ++  + DST+ATTA DDIHYIETSNEWSQWRDDLAEEMF+
Sbjct: 277 LACCLLHNLINREMTNFDIEDNIDEVDSTHATTAADDIHYIETSNEWSQWRDDLAEEMFT 336

Query: 61  DWELRNQ 68
           +WELRNQ
Sbjct: 337 EWELRNQ 343

The following BLAST results are available for this feature:

BLAST of PI0022968 vs.


Match Name	E-value	Identity	Description

BLAST of PI0022968 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BL48	8.3e-23	80.60	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5A7VJX3	8.3e-23	80.60	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D9Z3	1.9e-22	79.10	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TWH8	1.9e-22	79.10	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7UGH9	1.9e-22	79.10	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of PI0022968 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0067470.1	1.7e-22	80.60	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ99699.1	1.7e-22	80.60	putative nuclease HARBI1 [Cucumis melo var. makuwa]	[more]
KAA0065286.1	3.8e-22	79.10	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048281.1	3.8e-22	79.10	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0068124.1	3.8e-22	79.10	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of PI0022968 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0022968.1	PI0022968.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding