PI0022948 (gene) Melon (PI 482460) v1

Overview


Name	PI0022948
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	VQ motif-containing protein 20-like
Location	chr03: 346326 .. 347155 (+)
RNA-Seq Expression	PI0022948
Synteny	PI0022948

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTGAAGAAACCCTAAATCAAGAATGAGTCCTCAACAACAACAAATCCATGGAAAGAGGGATAATCAAATCAACAAAAATGGCAATAAACCATTGTCTCCACCGCCACCGAAGATCAATAAGGATTCTCATTTGATTCGGAAATCTTCCTCTTCTTCCAATACTTCTTCTCCATCTTCCTCTTCCTCTTCCACTACCTCTCTTGTCAATGGCGTCCCCACCCCTGCCGCTAAGCCGCCTCAACGACATCCGGTAATTATATACACACATTCTCCCAAAATCATTCATACACATCCTCGAGATTTCATGGCGTTGGTTCAAAAGCTAACCGGAATGTCTCGATCTGATGATGAAGCTTCTACGAAAGCAACGACGAAATCCGTCGATGAGAATAATAATAAAGGATCTAAAGTTGTGAATGATGATAATGAATCGTCGTCTGTTGTCACGACGGATGAAAATTGCTGTGGTGGTAACGGAAGCGGTGCGGTGGAAGGTGGTCAGGTTAATTCGTGTTTTGGTCCGGCGATTTTTGAGCCACCACCACCGCCACCTCCGCCACAACTGGCGAATTCTTACCTAACGAATATCCCGGTTTATGGGCCGAATTCGACGGAGTTTTTGTGCGCTAATCAACCGATTTTTAACTATGATGATTCTTTGCTTTTTGGTGGTTCCAATATTCCTTCTCTTTCGTCCAACGGAGTTAGTGATTTTAGCGAATATAGTGAATTTTAGAATGATTTTTTTTATTATTTTAAATAGTTGAGTTTGGTAAGGGATTAATTATTTAATTCAATTTGATTTGAATGCAATAAAAAAATTCAAA

mRNA sequence

ATTTTGAAGAAACCCTAAATCAAGAATGAGTCCTCAACAACAACAAATCCATGGAAAGAGGGATAATCAAATCAACAAAAATGGCAATAAACCATTGTCTCCACCGCCACCGAAGATCAATAAGGATTCTCATTTGATTCGGAAATCTTCCTCTTCTTCCAATACTTCTTCTCCATCTTCCTCTTCCTCTTCCACTACCTCTCTTGTCAATGGCGTCCCCACCCCTGCCGCTAAGCCGCCTCAACGACATCCGGTAATTATATACACACATTCTCCCAAAATCATTCATACACATCCTCGAGATTTCATGGCGTTGGTTCAAAAGCTAACCGGAATGTCTCGATCTGATGATGAAGCTTCTACGAAAGCAACGACGAAATCCGTCGATGAGAATAATAATAAAGGATCTAAAGTTGTGAATGATGATAATGAATCGTCGTCTGTTGTCACGACGGATGAAAATTGCTGTGGTGGTAACGGAAGCGGTGCGGTGGAAGGTGGTCAGGTTAATTCGTGTTTTGGTCCGGCGATTTTTGAGCCACCACCACCGCCACCTCCGCCACAACTGGCGAATTCTTACCTAACGAATATCCCGGTTTATGGGCCGAATTCGACGGAGTTTTTGTGCGCTAATCAACCGATTTTTAACTATGATGATTCTTTGCTTTTTGGTGGTTCCAATATTCCTTCTCTTTCGTCCAACGGAGTTAGTGATTTTAGCGAATATAGTGAATTTTAGAATGATTTTTTTTATTATTTTAAATAGTTGAGTTTGGTAAGGGATTAATTATTTAATTCAATTTGATTTGAATGCAATAAAAAAATTCAAA

Coding sequence (CDS)

ATGAGTCCTCAACAACAACAAATCCATGGAAAGAGGGATAATCAAATCAACAAAAATGGCAATAAACCATTGTCTCCACCGCCACCGAAGATCAATAAGGATTCTCATTTGATTCGGAAATCTTCCTCTTCTTCCAATACTTCTTCTCCATCTTCCTCTTCCTCTTCCACTACCTCTCTTGTCAATGGCGTCCCCACCCCTGCCGCTAAGCCGCCTCAACGACATCCGGTAATTATATACACACATTCTCCCAAAATCATTCATACACATCCTCGAGATTTCATGGCGTTGGTTCAAAAGCTAACCGGAATGTCTCGATCTGATGATGAAGCTTCTACGAAAGCAACGACGAAATCCGTCGATGAGAATAATAATAAAGGATCTAAAGTTGTGAATGATGATAATGAATCGTCGTCTGTTGTCACGACGGATGAAAATTGCTGTGGTGGTAACGGAAGCGGTGCGGTGGAAGGTGGTCAGGTTAATTCGTGTTTTGGTCCGGCGATTTTTGAGCCACCACCACCGCCACCTCCGCCACAACTGGCGAATTCTTACCTAACGAATATCCCGGTTTATGGGCCGAATTCGACGGAGTTTTTGTGCGCTAATCAACCGATTTTTAACTATGATGATTCTTTGCTTTTTGGTGGTTCCAATATTCCTTCTCTTTCGTCCAACGGAGTTAGTGATTTTAGCGAATATAGTGAATTTTAG

Protein sequence

MSPQQQQIHGKRDNQINKNGNKPLSPPPPKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLVNGVPTPAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATTKSVDENNNKGSKVVNDDNESSSVVTTDENCCGGNGSGAVEGGQVNSCFGPAIFEPPPPPPPPQLANSYLTNIPVYGPNSTEFLCANQPIFNYDDSLLFGGSNIPSLSSNGVSDFSEYSEF

Homology

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BLAST of PI0022948 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-27
Identity = 106/296 (35.81%), Postives = 142/296 (47.97%), Query Frame = 0


Query: 3   PQQQQIHGKRDNQINKNG-----NKPLSPPPPKINKDSHLIRKSSSSSNTSSPSSSSSST 62
           P     H KR+   N +G     +   SPP  K+NKDSH+I+K        SPSS SS  
Sbjct: 15  PHHHHHHPKREPNENNSGILYTPSPSPSPPTLKVNKDSHVIKK------PPSPSSFSS-- 74

Query: 63  TSLVNGVPTPAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDE------- 122
                     AAKP  RHPVIIYTH+P+IIHT+P+DFMALVQKLTGM+ SD++       
Sbjct: 75  ----------AAKP--RHPVIIYTHTPRIIHTNPKDFMALVQKLTGMTHSDEDLGGGNAM 134

Query: 123 --------ASTKATTKSVDENNNK------------------------GSKVVNDDNESS 182
                    +   +  +VD  NN+                         + ++++D+ESS
Sbjct: 135 TDPGVVKSINRTVSEPTVDRKNNRNRCGGGNNYLRNYSGAGNGKGIFFNNTMISEDSESS 194

Query: 183 SVVTTDENCCGGNGSGAVEGGQVNSCFGPAIF--------EPPPPPPPPQLAN------- 238
           SV+TT+EN          E GQVNS    +           PPPPPPPP + +       
Sbjct: 195 SVITTEEN--------IGEHGQVNSSLPYSAVAIPPQPPPHPPPPPPPPSMYDAAGINYG 254

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BLAST of PI0022948 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 2.0e-04
Identity = 45/135 (33.33%), Postives = 67/135 (49.63%), Query Frame = 0


Query: 12  RDNQINKNGNKPLSPPPPKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLVNGVPTPAAKP 71
           R N+I  NG++P S    K+  +SH I+K+SS  +   P   +S                
Sbjct: 5   RCNEI--NGSRPSS---LKLAGESHTIKKTSSCKSKPRPHGRAS---------------- 64

Query: 72  PQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMS----RSDDEASTKATTKSVDENNNKG 131
               PVIIY HSPK+IHT   DFMALVQ+LTG+     R+  E+S+   T+ V+  ++  
Sbjct: 65  ----PVIIYAHSPKVIHTRAEDFMALVQRLTGLDEIIRRNTSESSSSVVTEEVNVGDDNT 114

Query: 132 SKVVNDDNESSSVVT 143
           +   + D      +T
Sbjct: 125 AAPFSQDRTQRQKLT 114

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BLAST of PI0022948 vs. ExPASy TrEMBL
Match: A0A5A7V0G0 (VQ motif-containing protein 20-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G001740 PE=4 SV=1)

HSP 1 Score: 398.3 bits (1022), Expect = 2.3e-107
Identity = 217/239 (90.79%), Postives = 222/239 (92.89%), Query Frame = 0


Query: 1   MSP--QQQQIHGKRDNQINKNGNKPLSPPPPKINKDSHLIRKSSSSSNTSSPSSSSSSTT 60
           MSP  QQQQIHGKRDNQIN N NKPLSPP  KINKDSHLIRKSSSSSNTSSPSSSSSSTT
Sbjct: 1   MSPQHQQQQIHGKRDNQINNNANKPLSPPSLKINKDSHLIRKSSSSSNTSSPSSSSSSTT 60

Query: 61  SLVNGVPTPAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATTK 120
           SLVNGVPT  AKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKAT K
Sbjct: 61  SLVNGVPTAVAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAK 120

Query: 121 SVDENNNKGSKVVNDDNESSSVVTTDENCCGGNG-SGAVEGGQVNSCFGPAIFE--PPPP 180
           SVDE NNK SKVVNDDNESSSV+TTDENCC G+G SGAVEGGQVNSCFGPA FE  PPPP
Sbjct: 121 SVDE-NNKVSKVVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNSCFGPASFEPPPPPP 180

Query: 181 PPPPQLANSYLTNIPVYGPNSTEFLCANQPIFNYDDSLLFGGSNIPSLSSNGVSDFSEY 235
           PPPPQLANSYLTN+PVYGPNSTEFLC NQPIFNYDDSLLFGGSNIPSLSSNG+SDFSE+
Sbjct: 181 PPPPQLANSYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIPSLSSNGISDFSEF 238

[Close]

BLAST of PI0022948 vs. ExPASy TrEMBL
Match: A0A1S3BCI6 (VQ motif-containing protein 20-like OS=Cucumis melo OX=3656 GN=LOC103488533 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 3.0e-107
Identity = 217/239 (90.79%), Postives = 222/239 (92.89%), Query Frame = 0


Query: 1   MSP--QQQQIHGKRDNQINKNGNKPLSPPPPKINKDSHLIRKSSSSSNTSSPSSSSSSTT 60
           MSP  QQQQIHGKRDNQIN N NKPLSPP  KINKDSHLIRKSSSSSNTSSPSSSSSSTT
Sbjct: 1   MSPQHQQQQIHGKRDNQINNNANKPLSPPSLKINKDSHLIRKSSSSSNTSSPSSSSSSTT 60

Query: 61  SLVNGVPTPAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATTK 120
           SLVNGVPT  AKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKAT K
Sbjct: 61  SLVNGVPTAVAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAK 120

Query: 121 SVDENNNKGSKVVNDDNESSSVVTTDENCCGGNG-SGAVEGGQVNSCFGPAIFE--PPPP 180
           SVDE NNK SKVVNDDNESSSV+TTDENCC G+G SGAVEGGQVNSCFGPA FE  PPPP
Sbjct: 121 SVDE-NNKISKVVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNSCFGPASFEPPPPPP 180

Query: 181 PPPPQLANSYLTNIPVYGPNSTEFLCANQPIFNYDDSLLFGGSNIPSLSSNGVSDFSEY 235
           PPPPQLANSYLTN+PVYGPNSTEFLC NQPIFNYDDSLLFGGSNIPSLSSNG+SDFSE+
Sbjct: 181 PPPPQLANSYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIPSLSSNGISDFSEF 238

[Close]

BLAST of PI0022948 vs. ExPASy TrEMBL
Match: A0A0A0LKA6 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G350280 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 5.6e-106
Identity = 217/238 (91.18%), Postives = 223/238 (93.70%), Query Frame = 0


Query: 1   MSP-QQQQIHGKRDNQINKNGNKPLSPPP-PKINKDSHLIRKSSSSSNTSSPSSSSSSTT 60
           MSP QQQQIHGKRDNQ N N NKPLSPPP  KINKDSHLIRKSSSSSNTSSPSSSSSSTT
Sbjct: 1   MSPQQQQQIHGKRDNQTNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTT 60

Query: 61  SLVNGV-PTPAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATT 120
           SL+NGV PT AAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKAT 
Sbjct: 61  SLLNGVIPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATA 120

Query: 121 KSVDENNNKGSKVVNDDNESSSVVTTDENCCGGNG-SGAVEGGQVNSCFGPAIFEPPPPP 180
           KSV + NNK SKVVNDDNESSSVVTTDENCCGG+G SGAVEGGQVNSCFGPAIFEPPPPP
Sbjct: 121 KSVVDENNKASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFEPPPPP 180

Query: 181 PPPQLANSYLTNIPVYGPNSTEFLCANQPIFNYDDSLLFGGSNIPSLSSNGVSDFSEY 235
           PPPQLA+SYL+NIPVYGPNSTEFLC NQPIFNYDDSLLF GSNIPSLSSNGVSDFSE+
Sbjct: 181 PPPQLASSYLSNIPVYGPNSTEFLCGNQPIFNYDDSLLF-GSNIPSLSSNGVSDFSEF 237

[Close]

BLAST of PI0022948 vs. ExPASy TrEMBL
Match: A0A1S3BXM8 (VQ motif-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103494334 PE=4 SV=1)

HSP 1 Score: 333.6 bits (854), Expect = 6.9e-88
Identity = 202/252 (80.16%), Postives = 211/252 (83.73%), Query Frame = 0


Query: 1   MSPQQQQIHGKRDNQINKNGNKP-LSPPPPKINKDSHLIRKSSSSSN--TSSPSSSSSST 60
           MSP QQQIHGKRDNQIN NGNKP L PPP KINKDSHLIRK+SSSSN  TSSPSSSSSST
Sbjct: 1   MSP-QQQIHGKRDNQINNNGNKPILCPPPLKINKDSHLIRKTSSSSNNTTSSPSSSSSST 60

Query: 61  TSLVNGV---PTPAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDD-EAST 120
           TSLVNGV      AAKP QRHPVIIYTHSPK+IHTHPRDFMALVQKLTGMSRSDD EAST
Sbjct: 61  TSLVNGVAAAAAAAAKPLQRHPVIIYTHSPKVIHTHPRDFMALVQKLTGMSRSDDHEAST 120

Query: 121 K-ATTKSV---DENNNKGSK-VVNDDNESSSVVTTDENCC-GGNGSGAVEGGQVNSCFGP 180
           K ATTK V   + NNNKGSK VV+DDNESSSVVTTDENCC GG GSG +E GQVNSCFGP
Sbjct: 121 KLATTKPVVDENNNNNKGSKAVVSDDNESSSVVTTDENCCGGGGGSGMMEVGQVNSCFGP 180

Query: 181 AIFEPPPP---PPPPQLANSYLTNIPVYGPNSTEFLCANQPIFNYDDSLLFGGSNIPSLS 237
            IFEPPPP   PPPPQLANSYLTNIP+Y PNS EFLCANQPIFNYDDSLLFGG+ +    
Sbjct: 181 VIFEPPPPPPSPPPPQLANSYLTNIPIYTPNSMEFLCANQPIFNYDDSLLFGGNRV---- 240

[Close]

BLAST of PI0022948 vs. ExPASy TrEMBL
Match: A0A0A0LPK7 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G023620 PE=4 SV=1)

HSP 1 Score: 307.0 bits (785), Expect = 6.9e-80
Identity = 182/242 (75.21%), Postives = 188/242 (77.69%), Query Frame = 0


Query: 1   MSP--QQQQIHGKRDNQINKNG-NKP-LSPPPPKINKDSHLIRKSSSSSNTSSPSSSSSS 60
           MSP  QQQQIHGK DNQI  NG NKP L PPP KINKDSHLIRK+SSSSNTSSPSSSSSS
Sbjct: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60

Query: 61  TTSLVNGVPTPAAK-PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKA 120
           TTSL NGV   AAK PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTG+         KA
Sbjct: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGI------CCCKA 120

Query: 121 TTKSVDENNNKGSKVVNDDNESSSVVTTDENCCGGNGSGAVEGGQVNSCFGPAIFEPPPP 180
                         VVNDDNESSSVVTTDENCCGG GSG +E GQVNSCFGPAIFE  PP
Sbjct: 121 A-------------VVNDDNESSSVVTTDENCCGGGGSGLMEVGQVNSCFGPAIFE--PP 180

Query: 181 PPPPQLANSYLTNIPVYGPNSTEFLCANQPIFNYDDSLLFGGSNIPSLSSNGVSDFSEYS 238
           PPPPQLANSYLTNIP+Y PNSTEFLC NQPIFNYDDSLLFGG       +  V+DF EYS
Sbjct: 181 PPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGG-------NRSVNDFCEYS 214

[Close]

BLAST of PI0022948 vs. NCBI nr
Match: KAA0061038.1 (VQ motif-containing protein 20-like [Cucumis melo var. makuwa])

HSP 1 Score: 398.3 bits (1022), Expect = 4.7e-107
Identity = 217/239 (90.79%), Postives = 222/239 (92.89%), Query Frame = 0


Query: 1   MSP--QQQQIHGKRDNQINKNGNKPLSPPPPKINKDSHLIRKSSSSSNTSSPSSSSSSTT 60
           MSP  QQQQIHGKRDNQIN N NKPLSPP  KINKDSHLIRKSSSSSNTSSPSSSSSSTT
Sbjct: 1   MSPQHQQQQIHGKRDNQINNNANKPLSPPSLKINKDSHLIRKSSSSSNTSSPSSSSSSTT 60

Query: 61  SLVNGVPTPAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATTK 120
           SLVNGVPT  AKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKAT K
Sbjct: 61  SLVNGVPTAVAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAK 120

Query: 121 SVDENNNKGSKVVNDDNESSSVVTTDENCCGGNG-SGAVEGGQVNSCFGPAIFE--PPPP 180
           SVDE NNK SKVVNDDNESSSV+TTDENCC G+G SGAVEGGQVNSCFGPA FE  PPPP
Sbjct: 121 SVDE-NNKVSKVVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNSCFGPASFEPPPPPP 180

Query: 181 PPPPQLANSYLTNIPVYGPNSTEFLCANQPIFNYDDSLLFGGSNIPSLSSNGVSDFSEY 235
           PPPPQLANSYLTN+PVYGPNSTEFLC NQPIFNYDDSLLFGGSNIPSLSSNG+SDFSE+
Sbjct: 181 PPPPQLANSYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIPSLSSNGISDFSEF 238

[Close]

BLAST of PI0022948 vs. NCBI nr
Match: XP_008445554.1 (PREDICTED: VQ motif-containing protein 20-like [Cucumis melo])

HSP 1 Score: 397.9 bits (1021), Expect = 6.1e-107
Identity = 217/239 (90.79%), Postives = 222/239 (92.89%), Query Frame = 0


Query: 1   MSP--QQQQIHGKRDNQINKNGNKPLSPPPPKINKDSHLIRKSSSSSNTSSPSSSSSSTT 60
           MSP  QQQQIHGKRDNQIN N NKPLSPP  KINKDSHLIRKSSSSSNTSSPSSSSSSTT
Sbjct: 1   MSPQHQQQQIHGKRDNQINNNANKPLSPPSLKINKDSHLIRKSSSSSNTSSPSSSSSSTT 60

Query: 61  SLVNGVPTPAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATTK 120
           SLVNGVPT  AKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKAT K
Sbjct: 61  SLVNGVPTAVAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATAK 120

Query: 121 SVDENNNKGSKVVNDDNESSSVVTTDENCCGGNG-SGAVEGGQVNSCFGPAIFE--PPPP 180
           SVDE NNK SKVVNDDNESSSV+TTDENCC G+G SGAVEGGQVNSCFGPA FE  PPPP
Sbjct: 121 SVDE-NNKISKVVNDDNESSSVLTTDENCCNGSGSSGAVEGGQVNSCFGPASFEPPPPPP 180

Query: 181 PPPPQLANSYLTNIPVYGPNSTEFLCANQPIFNYDDSLLFGGSNIPSLSSNGVSDFSEY 235
           PPPPQLANSYLTN+PVYGPNSTEFLC NQPIFNYDDSLLFGGSNIPSLSSNG+SDFSE+
Sbjct: 181 PPPPQLANSYLTNMPVYGPNSTEFLCGNQPIFNYDDSLLFGGSNIPSLSSNGISDFSEF 238

[Close]

BLAST of PI0022948 vs. NCBI nr
Match: KGN62345.1 (hypothetical protein Csa_018596 [Cucumis sativus])

HSP 1 Score: 393.7 bits (1010), Expect = 1.2e-105
Identity = 217/238 (91.18%), Postives = 223/238 (93.70%), Query Frame = 0


Query: 1   MSP-QQQQIHGKRDNQINKNGNKPLSPPP-PKINKDSHLIRKSSSSSNTSSPSSSSSSTT 60
           MSP QQQQIHGKRDNQ N N NKPLSPPP  KINKDSHLIRKSSSSSNTSSPSSSSSSTT
Sbjct: 1   MSPQQQQQIHGKRDNQTNNNANKPLSPPPLLKINKDSHLIRKSSSSSNTSSPSSSSSSTT 60

Query: 61  SLVNGV-PTPAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATT 120
           SL+NGV PT AAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKAT 
Sbjct: 61  SLLNGVIPTAAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATA 120

Query: 121 KSVDENNNKGSKVVNDDNESSSVVTTDENCCGGNG-SGAVEGGQVNSCFGPAIFEPPPPP 180
           KSV + NNK SKVVNDDNESSSVVTTDENCCGG+G SGAVEGGQVNSCFGPAIFEPPPPP
Sbjct: 121 KSVVDENNKASKVVNDDNESSSVVTTDENCCGGSGSSGAVEGGQVNSCFGPAIFEPPPPP 180

Query: 181 PPPQLANSYLTNIPVYGPNSTEFLCANQPIFNYDDSLLFGGSNIPSLSSNGVSDFSEY 235
           PPPQLA+SYL+NIPVYGPNSTEFLC NQPIFNYDDSLLF GSNIPSLSSNGVSDFSE+
Sbjct: 181 PPPQLASSYLSNIPVYGPNSTEFLCGNQPIFNYDDSLLF-GSNIPSLSSNGVSDFSEF 237

[Close]

BLAST of PI0022948 vs. NCBI nr
Match: XP_038876677.1 (VQ motif-containing protein 20 [Benincasa hispida])

HSP 1 Score: 378.6 bits (971), Expect = 3.8e-101
Identity = 215/247 (87.04%), Postives = 218/247 (88.26%), Query Frame = 0


Query: 1   MSPQ-QQQIHGKRDNQI------NKNGNKPLSPPPPKINKDSHLIRKSSSSSNTSSPSSS 60
           MSPQ QQQ+HGKRDNQ       N NGNKPL PPP KINKDSHLIRKSSSSSNTSSPSSS
Sbjct: 1   MSPQPQQQLHGKRDNQNQSINNGNGNGNKPLCPPPLKINKDSHLIRKSSSSSNTSSPSSS 60

Query: 61  SSSTTSLVNGVPTPAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEAST 120
           SSSTTSLVNGV     KPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEAST
Sbjct: 61  SSSTTSLVNGV-----KPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEAST 120

Query: 121 KATTKSVDENNNKGSK--VVNDDNESSSVVTTDENCCGGNGSGAVEGGQVNSCFGPAIFE 180
           KATTKSVDE NNKGSK  VVNDDNESSSVVTTDENCCGG GSG VEGGQVNSCFG AIFE
Sbjct: 121 KATTKSVDE-NNKGSKKAVVNDDNESSSVVTTDENCCGG-GSGVVEGGQVNSCFGAAIFE 180

Query: 181 PPPPPPPPQLANSYLTNIPVYGPNSTEFLCANQP-IFNYDDSLLFGGSNIPSLSSNGVSD 238
           PPPPPPPPQLANSYLTNIPVY PNSTEFLC NQP  FNYDDSLLFG  NIPSLSSNG++D
Sbjct: 181 PPPPPPPPQLANSYLTNIPVYRPNSTEFLCTNQPSFFNYDDSLLFGAHNIPSLSSNGIND 240

[Close]

BLAST of PI0022948 vs. NCBI nr
Match: XP_004138347.3 (VQ motif-containing protein 20 [Cucumis sativus])

HSP 1 Score: 333.6 bits (854), Expect = 1.4e-87
Identity = 204/255 (80.00%), Postives = 209/255 (81.96%), Query Frame = 0


Query: 1   MSP--QQQQIHGKRDNQINKNG-NKP-LSPPPPKINKDSHLIRKSSSSSNTSSPSSSSSS 60
           MSP  QQQQIHGK DNQI  NG NKP L PPP KINKDSHLIRK+SSSSNTSSPSSSSSS
Sbjct: 1   MSPQQQQQQIHGKMDNQITNNGNNKPILCPPPLKINKDSHLIRKTSSSSNTSSPSSSSSS 60

Query: 61  TTSLVNGVPTPAAK-PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS--DDEAST 120
           TTSL NGV   AAK PPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRS  D EAST
Sbjct: 61  TTSLANGVAAAAAKPPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDHDHEAST 120

Query: 121 K--ATTKS-VDE------NNNKGSK--VVNDDNESSSVVTTDENCCGGNGSGAVEGGQVN 180
              ATTKS VDE      NNNKGSK  VVNDDNESSSVVTTDENCCGG GSG +E GQVN
Sbjct: 121 TKLATTKSAVDENNNNNNNNNKGSKAAVVNDDNESSSVVTTDENCCGGGGSGLMEVGQVN 180

Query: 181 SCFGPAIFEPPPPPPPPQLANSYLTNIPVYGPNSTEFLCANQPIFNYDDSLLFGGSNIPS 238
           SCFGPAIFE  PPPPPPQLANSYLTNIP+Y PNSTEFLC NQPIFNYDDSLLFGG     
Sbjct: 181 SCFGPAIFE--PPPPPPQLANSYLTNIPIYTPNSTEFLCTNQPIFNYDDSLLFGG----- 240

[Close]

BLAST of PI0022948 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-28
Identity = 106/296 (35.81%), Postives = 142/296 (47.97%), Query Frame = 0


Query: 3   PQQQQIHGKRDNQINKNG-----NKPLSPPPPKINKDSHLIRKSSSSSNTSSPSSSSSST 62
           P     H KR+   N +G     +   SPP  K+NKDSH+I+K        SPSS SS  
Sbjct: 15  PHHHHHHPKREPNENNSGILYTPSPSPSPPTLKVNKDSHVIKK------PPSPSSFSS-- 74

Query: 63  TSLVNGVPTPAAKPPQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMSRSDDE------- 122
                     AAKP  RHPVIIYTH+P+IIHT+P+DFMALVQKLTGM+ SD++       
Sbjct: 75  ----------AAKP--RHPVIIYTHTPRIIHTNPKDFMALVQKLTGMTHSDEDLGGGNAM 134

Query: 123 --------ASTKATTKSVDENNNK------------------------GSKVVNDDNESS 182
                    +   +  +VD  NN+                         + ++++D+ESS
Sbjct: 135 TDPGVVKSINRTVSEPTVDRKNNRNRCGGGNNYLRNYSGAGNGKGIFFNNTMISEDSESS 194

Query: 183 SVVTTDENCCGGNGSGAVEGGQVNSCFGPAIF--------EPPPPPPPPQLAN------- 238
           SV+TT+EN          E GQVNS    +           PPPPPPPP + +       
Sbjct: 195 SVITTEEN--------IGEHGQVNSSLPYSAVAIPPQPPPHPPPPPPPPSMYDAAGINYG 254

[Close]

BLAST of PI0022948 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.4e-05
Identity = 45/135 (33.33%), Postives = 67/135 (49.63%), Query Frame = 0


Query: 12  RDNQINKNGNKPLSPPPPKINKDSHLIRKSSSSSNTSSPSSSSSSTTSLVNGVPTPAAKP 71
           R N+I  NG++P S    K+  +SH I+K+SS  +   P   +S                
Sbjct: 5   RCNEI--NGSRPSS---LKLAGESHTIKKTSSCKSKPRPHGRAS---------------- 64

Query: 72  PQRHPVIIYTHSPKIIHTHPRDFMALVQKLTGMS----RSDDEASTKATTKSVDENNNKG 131
               PVIIY HSPK+IHT   DFMALVQ+LTG+     R+  E+S+   T+ V+  ++  
Sbjct: 65  ----PVIIYAHSPKVIHTRAEDFMALVQRLTGLDEIIRRNTSESSSSVVTEEVNVGDDNT 114

Query: 132 SKVVNDDNESSSVVT 143
           +   + D      +T
Sbjct: 125 AAPFSQDRTQRQKLT 114

[Close]

BLAST of PI0022948 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.6e-04
Identity = 35/99 (35.35%), Postives = 53/99 (53.54%), Query Frame = 0


Query: 26  PPPPKINKDSH-LIRKSSSSSNTSSPSSSSSSTTSLVNGVPTPAAKPPQRHPVIIYTHSP 85
           P P K+  DSH +I+K   +     P    +           P+   P   PVIIYT SP
Sbjct: 16  PIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQE-------PSQSRPPPGPVIIYTVSP 75

Query: 86  KIIHTHPRDFMALVQKLTGMSRSDDEASTKATTKSVDEN 124
           +IIHTHP +FM LVQ+LTG + +   +S+ +++ S  ++
Sbjct: 76  RIIHTHPNNFMTLVQRLTGKTSTSTTSSSYSSSTSAPKD 107

[Close]

BLAST of PI0022948 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 44.3 bits (103), Expect = 1.6e-04
Identity = 35/101 (34.65%), Postives = 52/101 (51.49%), Query Frame = 0


Query: 20  GNKPLSPPPPKINKDSH-LIRKSSSSSNTSSPSSSSSSTTSLVNGVPTPAAKPPQRHPVI 79
           GN    P P K+  DSH +I+K   +     P    +           P+   P   PV 
Sbjct: 10  GNMGPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQE-------PSQSRPPPGPVN 69

Query: 80  IYTHSPKIIHTHPRDFMALVQKLTGMSRSDDEASTKATTKS 120
           IYT +P+IIHTHP +FM LVQ+LTG + +   +S+ +++ S
Sbjct: 70  IYTVTPRIIHTHPNNFMTLVQRLTGQTSTSTTSSSSSSSTS 103

The following BLAST results are available for this feature:

BLAST of PI0022948 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LS54	1.7e-27	35.81	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]
Q9CA36	2.0e-04	33.33	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]

BLAST of PI0022948 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V0G0	2.3e-107	90.79	VQ motif-containing protein 20-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A1S3BCI6	3.0e-107	90.79	VQ motif-containing protein 20-like OS=Cucumis melo OX=3656 GN=LOC103488533 PE=4...	[more]
A0A0A0LKA6	5.6e-106	91.18	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G350280 PE=4 SV=...	[more]
A0A1S3BXM8	6.9e-88	80.16	VQ motif-containing protein 20 OS=Cucumis melo OX=3656 GN=LOC103494334 PE=4 SV=1	[more]
A0A0A0LPK7	6.9e-80	75.21	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G023620 PE=4 SV=...	[more]

BLAST of PI0022948 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061038.1	4.7e-107	90.79	VQ motif-containing protein 20-like [Cucumis melo var. makuwa]	[more]
XP_008445554.1	6.1e-107	90.79	PREDICTED: VQ motif-containing protein 20-like [Cucumis melo]	[more]
KGN62345.1	1.2e-105	91.18	hypothetical protein Csa_018596 [Cucumis sativus]	[more]
XP_038876677.1	3.8e-101	87.04	VQ motif-containing protein 20 [Benincasa hispida]	[more]
XP_004138347.3	1.4e-87	80.00	VQ motif-containing protein 20 [Cucumis sativus]	[more]

BLAST of PI0022948 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18360.1	1.2e-28	35.81	VQ motif-containing protein	[more]
AT1G68450.1	1.4e-05	33.33	VQ motif-containing protein	[more]
AT1G21326.1	1.6e-04	35.35	VQ motif-containing protein	[more]
AT1G21320.1	1.6e-04	34.65	nucleotide binding;nucleic acid binding	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 81..105 e-value: 1.7E-11 score: 43.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..64
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..75
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 104..144
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..144
IPR039832	VQ motif-containing protein 20	PANTHER	PTHR33143:SF4	VQ MOTIF-CONTAINING PROTEIN 20	coord: 1..234
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 1..234

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0022948.1	PI0022948.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding