PI0022897 (gene) Melon (PI 482460) v1

Overview
NamePI0022897
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionZinc finger BED domain-containing protein RICESLEEPER 3-like
Locationchr01: 9091514 .. 9093826 (-)
RNA-Seq ExpressionPI0022897
SyntenyPI0022897
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCAACGGATGTGGAGTTTGATGGAAGTGAAACTTCAAAACTTGTACTAGACGAAGATATAGATGTCAATACAAATGACCAAACCCAAAGTAAAACTATTGATGTTGATTCAGATGGGACGGAAGATGATCCAAATCCCCCCAAAAGAAGGAAAAATGTCAAACAATTCATCGTTTGGGACCACTTTGAGAGGCTTAAAGGTGATCCTAAAAACCCTCACGCTAAATGTAAATACTGTGGAGTTGTCTATGCATGTCACTCTAAACTTAATGGTATTGGAACTATGAAGCATCATTTGGAAAATTGCAAAAAGTATCCTTACCAAAAAAAAAAAAGAGATCAAACTCAAATGACATTAAATTTCAAGTCTAAAGACAAAGTTGGGGATAATTCTTCACAACTTGTATGTGAGTCATTCAGTTCAGAGGATTGTCATGAAGCTTTGGTTGAAATGATAATAGTAGATGAATTGCCCTTTAAGTTTGTGGAGGGTAAAAGATTTAAGAAATTTGTGAATAGATTAACATGTGCAAATCAAACTAGATTTGTTGTTCCGTCTCGCTTTACTGTGGCTAGGGATGTGCTTAAATTGTATGTTAATGAGAAGAATCGTTTGAAAGACATGTTTGTAAAAAATAAGTATCGAGTTTCTCTCACCACAGATTGTTGGACATCGGGTCAAAATATAAATTACATGGTCCTAACTGCCCATTTCATAGATTATGATTGGAAATTACATAAGAGAATACTTAGTTTTTGTCCAATTGAGAATCATAAAGGCGATACTATAGGTAAAACCATTGAAAAGAATTTGAAGGATTGGGGCATTGAGAGGGTAATGACTTTGACTGTTGATAATGCAAGTTCAAATGACACTGCTGTTGCTTATCTTTTGAAGAGATTCAATAAAGGATTATTGTTTTGTGGAGAATTTCTACATTTTCGTTGTTGTGCCCATATATTGAATCTTATAGTAAATGATGCATTTAAGGAACATAATGATTGCATTAATAGGATTCGATATGCCGTACAATTTATAAGGTCTTCTTCTGCACGTTTTTTGAAATTTAAAAAGTGAATTGAAATTGAAAAAATAGTTTGTAAGAGTTATGTGTGTCTTGATGTTCCCACAAGATGGAACTCCACATATATGATGCTTGAAACTGCTGTTAAGTTTGAAAAGGCTTTTGATATATTAGAAGATGAAGATGCCTCTTATAGACATGATATGTCACCGAATAAGGAAGATTGGACAAATGCAAAATGTTAATACGATTTTTAAAAGTCTTTTATGATGTGACATTAAAGATTTCAAGCTCTTTGTACACCACTTCGAACTTGGTTTTCCATCAGATTACAGTGGTTCAGAATTGTATACGTTTGAATGCGGGTAGTGCAAATGCATTGTTAGTTGGAATGGCTAATAACATGAAGGCAAAATTTGAGAAATATTGGGGGAACAATGAAAAAAATAATTTGTTGTTGTATGTCGCTATTGTGCTGGATCCTCGTAAGAAACTAAGATTTGTATATTTTTGTTTGAAAATTTTTTTTGGTCCTGAGGTTGCTGAATCCATGGGAAATGTAGTGGAACAATGTTGTAGACGTTTCTTTCATGAGTATAGTTGTACTCGAAGTGGTAGTGGACTAGGAGGTAATAGTACTACTAGTACACAAACTATCTCATCAGGCTTGGATGCGAATATTGATTTTGATCCAAATGAAAAGGTGGGTGAAGATTTTGTCTATGACACGATTGTTGAGGAATTTGAAGGTGATGCAACTACTACACCTTTCGAACAGGGGTCATCAGAGATTGATATCTATTTGTTGGAAGCCAATGTTAGGAACGAAGGTGATTTTGACATACTACAGTGGTGGAAGATGAACAATGATCGGTTTGAGGTTCTTAGTCGTATGGCTAGAGATATTTTGGCTATTCGAGTTTCTACTGTAGCGTCCGAGTCGGCTTTTAGTACCGGAGGACGTGTGTTGATTCATCACGTTGCTCATTGGCTCCTAAAACAGTGAAGGCTCTCATATGTACTCAAAATAGGCTAAATTCTGATCCAATAGATCTTCAAGTTCAACATGAATTGGAAGAGGCTTCAAAATTTGAAGAAGGTATTATTCAAATTTTTTAACGATGTGTTTTTTTGTAATTTTAGTGAAATCTTAAATTATTTAATATTCATGATGTTGTCTTTCTCTTGTTAATCTTGATATTATAGGATTCCGAGTGGTTATGGATAATGAAAAGGAGCTTGAAGACCTTCCAGATTTTGATAAGTTGTTAATTACCGATTAG

mRNA sequence

ATGGATTCAACGGATGTGGAGTTTGATGGAAGTGAAACTTCAAAACTTGTACTAGACGAAGATATAGATGTCAATACAAATGACCAAACCCAAAGCTTGGATGCGAATATTGATTTTGATCCAAATGAAAAGGTGGGTGAAGATTTTGTCTATGACACGATTGTTGAGGAATTTGAAGGTGATGCAACTACTACACCTTTCGAACAGGGGTCATCAGAGATTGATATCTATTTGTTGGAAGCCAATGTTAGGAACGAAGGATTCCGAGTGGTTATGGATAATGAAAAGGAGCTTGAAGACCTTCCAGATTTTGATAAGTTGTTAATTACCGATTAG

Coding sequence (CDS)

ATGGATTCAACGGATGTGGAGTTTGATGGAAGTGAAACTTCAAAACTTGTACTAGACGAAGATATAGATGTCAATACAAATGACCAAACCCAAAGCTTGGATGCGAATATTGATTTTGATCCAAATGAAAAGGTGGGTGAAGATTTTGTCTATGACACGATTGTTGAGGAATTTGAAGGTGATGCAACTACTACACCTTTCGAACAGGGGTCATCAGAGATTGATATCTATTTGTTGGAAGCCAATGTTAGGAACGAAGGATTCCGAGTGGTTATGGATAATGAAAAGGAGCTTGAAGACCTTCCAGATTTTGATAAGTTGTTAATTACCGATTAG

Protein sequence

MDSTDVEFDGSETSKLVLDEDIDVNTNDQTQSLDANIDFDPNEKVGEDFVYDTIVEEFEGDATTTPFEQGSSEIDIYLLEANVRNEGFRVVMDNEKELEDLPDFDKLLITD
Homology
[Close]
BLAST of PI0022897 vs. ExPASy TrEMBL
Match: A0A5A7VMG3 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00420 PE=4 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 3.6e-23
Identity = 90/194 (46.39%), Postives = 97/194 (50.00%), Query Frame = 0 

Query: 1   MDSTDVEFD---GSETSKLVLDED-------IDVNTND----------------QT-QSL 60
           MDSTD+E +    SE SK+V DED       IDV+ +                 QT   L
Sbjct: 1   MDSTDMELECDGSSEASKIVRDEDTDGKRKTIDVDLDSYGREDVPNPPKNKEECQTINGL 60

Query: 61  DANIDFDPNEKVGEDFVYDTIVEEFEGDATTTPFEQGSSEIDIYLLEANVR--------- 112
           DANIDFD NE VGEDFVYDTIVEEFE D +TTPFEQGSSEIDIYLLEANVR         
Sbjct: 61  DANIDFDSNENVGEDFVYDTIVEEFEDD-STTPFEQGSSEIDIYLLEANVRTEASESAFS 120

[Close]
BLAST of PI0022897 vs. ExPASy TrEMBL
Match: A0A5D3BRS6 (Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00340 PE=4 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.2e-21
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 44  KVGEDFVYDTIVEEFEGDATTTPFEQGSSEIDIYLLEANVRNEGFRVVMDNEKELEDLPD 103
           K+ +DFVYDTIVEEFE DA TTPFEQGSSEIDIYLLEANVR EGF VVM+NEKEL+DLPD
Sbjct: 158 KLVDDFVYDTIVEEFEDDA-TTPFEQGSSEIDIYLLEANVRTEGFLVVMENEKELQDLPD 217

Query: 104 FDKLLITD 112
           FDKL ITD
Sbjct: 218 FDKLSITD 224

[Close]
BLAST of PI0022897 vs. ExPASy TrEMBL
Match: A0A5A7UPB8 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00460 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.1e-19
Identity = 72/143 (50.35%), Postives = 76/143 (53.15%), Query Frame = 0 

Query: 26  TNDQTQS-LDANIDFDPNEKVGEDFVYDTIVEEFEGDATTTPFEQGSSEIDIYLLEANVR 85
           T+ QT S LDANIDFD NE VGEDFVYDTIV+EFE D +TTPFEQGSSEI IYLLEANVR
Sbjct: 33  TSTQTVSGLDANIDFDSNENVGEDFVYDTIVKEFEDD-STTPFEQGSSEIGIYLLEANVR 92

Query: 86  NEG--------------------------------------------------------F 112
            E                                                         F
Sbjct: 93  TEASESAFSTGGRVVDSSRCSLAPKTVEALICTQNWLNSDPIHLQFQHELEEASKFEEEF 152

[Close]
BLAST of PI0022897 vs. ExPASy TrEMBL
Match: A0A5A7SXI9 (Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold228G00640 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 4.1e-19
Identity = 72/147 (48.98%), Postives = 77/147 (52.38%), Query Frame = 0 

Query: 26  TNDQTQS-LDANIDFDPNEKVGEDFVYDTIVEEFEGDATTTPFEQGSSEIDIYLLEANVR 85
           T+ QT S LDANIDFD NE VGEDFVYDTIV++ E D +TTPFEQGSSEIDIYLLEANVR
Sbjct: 33  TSTQTVSGLDANIDFDLNENVGEDFVYDTIVKKSEDD-STTPFEQGSSEIDIYLLEANVR 92

Query: 86  ------------------------------------------------------------ 112
                                                                       
Sbjct: 93  TEVSTVASDSAFSTEGRVVDSSRCSLAPKTVEALICTQNWLNSDSIHLQFQHELEEASKF 152

[Close]
BLAST of PI0022897 vs. ExPASy TrEMBL
Match: A0A5A7UE50 (Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G004690 PE=4 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 5.4e-19
Identity = 68/145 (46.90%), Postives = 72/145 (49.66%), Query Frame = 0 

Query: 22  IDVNTNDQTQSLDANIDFDPNEKVGEDFVYDTIVEEFEGDATTTPFEQGSSEIDIYLLEA 81
           I   +     SLDANIDFD NE VGEDFVYDTIV+EFEGDA TTPFEQGSSEIDIYLLEA
Sbjct: 296 ISTTSTQTVSSLDANIDFDSNENVGEDFVYDTIVKEFEGDA-TTPFEQGSSEIDIYLLEA 355

Query: 82  NVR--------------------------------------------------------- 107
           NV                                                          
Sbjct: 356 NVMTEVSTVASESAFSTEGRVVDSSRCSLAPKTVEALICTQNWLNSDPIHLQIQHELEEA 415

[Close]
BLAST of PI0022897 vs. NCBI nr
Match: KAA0067726.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 117.5 bits (293), Expect = 7.5e-23
Identity = 90/194 (46.39%), Postives = 97/194 (50.00%), Query Frame = 0 

Query: 1   MDSTDVEFD---GSETSKLVLDED-------IDVNTND----------------QT-QSL 60
           MDSTD+E +    SE SK+V DED       IDV+ +                 QT   L
Sbjct: 1   MDSTDMELECDGSSEASKIVRDEDTDGKRKTIDVDLDSYGREDVPNPPKNKEECQTINGL 60

Query: 61  DANIDFDPNEKVGEDFVYDTIVEEFEGDATTTPFEQGSSEIDIYLLEANVR--------- 112
           DANIDFD NE VGEDFVYDTIVEEFE D +TTPFEQGSSEIDIYLLEANVR         
Sbjct: 61  DANIDFDSNENVGEDFVYDTIVEEFEDD-STTPFEQGSSEIDIYLLEANVRTEASESAFS 120

[Close]
BLAST of PI0022897 vs. NCBI nr
Match: KAA0060741.1 (zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa] >TYK01482.1 zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 112.5 bits (280), Expect = 2.4e-21
Identity = 58/68 (85.29%), Postives = 62/68 (91.18%), Query Frame = 0 

Query: 44  KVGEDFVYDTIVEEFEGDATTTPFEQGSSEIDIYLLEANVRNEGFRVVMDNEKELEDLPD 103
           K+ +DFVYDTIVEEFE DA TTPFEQGSSEIDIYLLEANVR EGF VVM+NEKEL+DLPD
Sbjct: 158 KLVDDFVYDTIVEEFEDDA-TTPFEQGSSEIDIYLLEANVRTEGFLVVMENEKELQDLPD 217

Query: 104 FDKLLITD 112
           FDKL ITD
Sbjct: 218 FDKLSITD 224

[Close]
BLAST of PI0022897 vs. NCBI nr
Match: KAA0056156.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 105.9 bits (263), Expect = 2.3e-19
Identity = 72/143 (50.35%), Postives = 76/143 (53.15%), Query Frame = 0 

Query: 26  TNDQTQS-LDANIDFDPNEKVGEDFVYDTIVEEFEGDATTTPFEQGSSEIDIYLLEANVR 85
           T+ QT S LDANIDFD NE VGEDFVYDTIV+EFE D +TTPFEQGSSEI IYLLEANVR
Sbjct: 33  TSTQTVSGLDANIDFDSNENVGEDFVYDTIVKEFEDD-STTPFEQGSSEIGIYLLEANVR 92

Query: 86  NEG--------------------------------------------------------F 112
            E                                                         F
Sbjct: 93  TEASESAFSTGGRVVDSSRCSLAPKTVEALICTQNWLNSDPIHLQFQHELEEASKFEEEF 152

[Close]
BLAST of PI0022897 vs. NCBI nr
Match: KAA0035273.1 (transposase [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 8.6e-19
Identity = 72/147 (48.98%), Postives = 77/147 (52.38%), Query Frame = 0 

Query: 26  TNDQTQS-LDANIDFDPNEKVGEDFVYDTIVEEFEGDATTTPFEQGSSEIDIYLLEANVR 85
           T+ QT S LDANIDFD NE VGEDFVYDTIV++ E D +TTPFEQGSSEIDIYLLEANVR
Sbjct: 33  TSTQTVSGLDANIDFDLNENVGEDFVYDTIVKKSEDD-STTPFEQGSSEIDIYLLEANVR 92

Query: 86  ------------------------------------------------------------ 112
                                                                       
Sbjct: 93  TEVSTVASDSAFSTEGRVVDSSRCSLAPKTVEALICTQNWLNSDSIHLQFQHELEEASKF 152

[Close]
BLAST of PI0022897 vs. NCBI nr
Match: TYK04573.1 (zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. makuwa])

HSP 1 Score: 103.6 bits (257), Expect = 1.1e-18
Identity = 68/145 (46.90%), Postives = 72/145 (49.66%), Query Frame = 0 

Query: 22  IDVNTNDQTQSLDANIDFDPNEKVGEDFVYDTIVEEFEGDATTTPFEQGSSEIDIYLLEA 81
           I   +     SLDANIDFD NE VGEDFVYDTIV+EFEGDA TTPFEQGSSEIDIYLLEA
Sbjct: 463 ISTTSTQTVSSLDANIDFDSNENVGEDFVYDTIVKEFEGDA-TTPFEQGSSEIDIYLLEA 522

Query: 82  NVR--------------------------------------------------------- 107
           NV                                                          
Sbjct: 523 NVMTEVSTVASESAFSTEGRVVDSSRCSLAPKTVEALICTQNWLNSDPIHLQIQHELEEA 582

The following BLAST results are available for this feature:
BLAST of PI0022897 vs.
Match NameE-valueIdentityDescription
BLAST of PI0022897 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VMG33.6e-2346.39Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold352G00420 PE... [more]
A0A5D3BRS61.2e-2185.29Zinc finger BED domain-containing protein RICESLEEPER 3-like OS=Cucumis melo var... [more]
A0A5A7UPB81.1e-1950.35Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00460 PE... [more]
A0A5A7SXI94.1e-1948.98Transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold228G00640 PE... [more]
A0A5A7UE505.4e-1946.90Zinc finger BED domain-containing protein RICESLEEPER 2-like OS=Cucumis melo var... [more]
BLAST of PI0022897 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0067726.17.5e-2346.39transposase [Cucumis melo var. makuwa][more]
KAA0060741.12.4e-2185.29zinc finger BED domain-containing protein RICESLEEPER 3-like [Cucumis melo var. ... [more]
KAA0056156.12.3e-1950.35transposase [Cucumis melo var. makuwa][more]
KAA0035273.18.6e-1948.98transposase [Cucumis melo var. makuwa][more]
TYK04573.11.1e-1846.90zinc finger BED domain-containing protein RICESLEEPER 2-like [Cucumis melo var. ... [more]
BLAST of PI0022897 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0022897.1PI0022897.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009791 post-embryonic development
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0046983 protein dimerization activity