PI0022886 (gene) Melon (PI 482460) v1

Overview
NamePI0022886
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUnknown protein
Locationchr09: 19554773 .. 19555972 (-)
RNA-Seq ExpressionPI0022886
SyntenyPI0022886
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCAAGGTTTTCTTGCTCCCAATTCTTCATTGTTTTTCTCCTTCTCTCAGGTTTGTTGTTTTTCGGTTATGGAAGAATGCATAATTAAAATTTTATAAATTTAGGGTTTAAGGTTTAAAAAGCATAAACATGGGTGTCGTTGTATCCTACGTTTTTTTCCCATCATAATGTTTGGTAATTAATTGATTTTTCTTTTTTAATTACGTTTGTTTCACCATTTTTATTTTTCCTACTTAAGTATTTGAATTTTTAGTCAATTTCTTAAAACAAAGACAAGTTTTTTAAAATATATTCTTTTTTAAAAAAATTGGTTGTAATTATGCAAACATATTGGGATCATAGACACCAATAGAAGAACATGGTTTTCATAGGATTAATTTACAAAAATTAAAAAATAAAAAGGAACGTATCCTAAATGGCAAAATTCTTGAAAATATTTACAAAACATAGCAAAATTTCGGAGAAAATTGGGGGAATTGCAACACATTTAGTGTCTATTAATGATAGATTTGTAATTTTGTTATATTTTGTAAATACTTTGGTTTATTTTGTTATATTTAAAATGTCCCAAATAAAAAAATTGAATAATTACCAAACACATATCCTTGAGGCTCATTTTTCATTTATTTTACCTTTTCGGAGTTTGTTTTTCACTAATCAATATATAAGTTTTAAATCAAATTTTAATTTAGTAGTGTTAGTTTTTTCTTTTAAAAAAACATTATATTAAAATAACATTATATTAGATGTGGAAATAATGATTCAAATATTGTCCGAACGAAGATTTCTCAACTAGCTTAAAACTTATTCAATTAACTTTAATGGTAAAAGTTTGATTCTCCTACGCTGAATATTATAATAATAATAAAGAAACTACGATGCTCAAGTTGGTCATACAACTATTGAGATTGAATAATGAAATAATGTATTAGCATTAACAAAAAAAAAAATACAAAAATTATATAGATTTAACCTAAAAGATTTGAATATTTATGCAGCTGCGTGGATGACGATGCCTAAAGGAGCCAATGCAAAAGTATGTCTTGATCAGTTGTACATAGGATGCACAGCTGCTGATGAATGTAAGAATAGGTGCTTAGCCAAATATTCAAATTATTCATCATCTGAATGTGTTTCAATGCCACCAATTCCCTTTCACTATGTTTGTCTTTGCTTCTATAGTTGCCCTTCAAAATAA

mRNA sequence

ATGTCAAGGTTTTCTTGCTCCCAATTCTTCATTGTTTTTCTCCTTCTCTCAGCTGCGTGGATGACGATGCCTAAAGGAGCCAATGCAAAAGTATGTCTTGATCAGTTGTACATAGGATGCACAGCTGCTGATGAATGTAAGAATAGGTGCTTAGCCAAATATTCAAATTATTCATCATCTGAATGTGTTTCAATGCCACCAATTCCCTTTCACTATGTTTGTCTTTGCTTCTATAGTTGCCCTTCAAAATAA

Coding sequence (CDS)

ATGTCAAGGTTTTCTTGCTCCCAATTCTTCATTGTTTTTCTCCTTCTCTCAGCTGCGTGGATGACGATGCCTAAAGGAGCCAATGCAAAAGTATGTCTTGATCAGTTGTACATAGGATGCACAGCTGCTGATGAATGTAAGAATAGGTGCTTAGCCAAATATTCAAATTATTCATCATCTGAATGTGTTTCAATGCCACCAATTCCCTTTCACTATGTTTGTCTTTGCTTCTATAGTTGCCCTTCAAAATAA

Protein sequence

MSRFSCSQFFIVFLLLSAAWMTMPKGANAKVCLDQLYIGCTAADECKNRCLAKYSNYSSSECVSMPPIPFHYVCLCFYSCPSK
Homology
[Close]
BLAST of PI0022886 vs. ExPASy TrEMBL
Match: A0A0A0KS76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634340 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 60/81 (74.07%), Postives = 66/81 (81.48%), Query Frame = 0 

Query: 1  MSRFSCSQFFIVFLLLSAAWMTMPKGANAKVCLDQLY-IGCTAADECKNRCLAKYSNYSS 60
          MSR S SQFFIVFLLLS AWM MPK ANAKVC D+LY +GC  ADECK RC AKY N SS
Sbjct: 1  MSRISSSQFFIVFLLLSVAWMGMPKVANAKVCADKLYDVGC-VADECKQRCSAKYPNDSS 60

Query: 61 SECVSMPPIPFHYVCLCFYSC 81
          S+C+S+PPIPFH  CLCFY+C
Sbjct: 61 SQCLSLPPIPFHNACLCFYNC 80

[Close]
BLAST of PI0022886 vs. ExPASy TrEMBL
Match: A0A0A0KU45 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634350 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.9e-16
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0 

Query: 1  MSRFSCSQFFIVFLLLSAAWMTMPKGANAKVCLDQLYIGCTAADECKNRCLAKYSNYSSS 60
          M++FSCS FFI F LLSAAW+ MP G +A  C  +LY GC   D C  +C  KY N SSS
Sbjct: 1  MAKFSCSLFFIGFFLLSAAWI-MPNGVSATKCETKLYDGCLPKD-CTQKCSDKYPN-SSS 60

Query: 61 ECVSMPPIPFHYVCLCFYSC 81
          ECV++PPIPFHY C CFY C
Sbjct: 61 ECVAVPPIPFHYSCYCFYDC 77

[Close]
BLAST of PI0022886 vs. ExPASy TrEMBL
Match: A0A3N7EI84 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G180750 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.3e-04
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 0 

Query: 1  MSRFSCSQFFIVFLLLSAAWMTMPKGANAKVCLDQLYIGCTAADECKNRCLAKYSNYSSS 60
          M+R S ++FF +FL+LSAA +T P    AK CLD LY      ++C  +C  K+++    
Sbjct: 1  MARISFTRFFTLFLVLSAALVT-PHVNGAKRCLDILYKSGCNLEDCGAKCYKKHNSIHGG 60

Query: 61 ECVSMPPIPFHYVCLCFYSC 81
          +C++ P +   Y C+C Y+C
Sbjct: 61 QCIANPTMT-DYSCVCAYNC 78

[Close]
BLAST of PI0022886 vs. NCBI nr
Match: KGN52438.1 (hypothetical protein Csa_008032 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 2.3e-24
Identity = 60/81 (74.07%), Postives = 66/81 (81.48%), Query Frame = 0 

Query: 1  MSRFSCSQFFIVFLLLSAAWMTMPKGANAKVCLDQLY-IGCTAADECKNRCLAKYSNYSS 60
          MSR S SQFFIVFLLLS AWM MPK ANAKVC D+LY +GC  ADECK RC AKY N SS
Sbjct: 1  MSRISSSQFFIVFLLLSVAWMGMPKVANAKVCADKLYDVGC-VADECKQRCSAKYPNDSS 60

Query: 61 SECVSMPPIPFHYVCLCFYSC 81
          S+C+S+PPIPFH  CLCFY+C
Sbjct: 61 SQCLSLPPIPFHNACLCFYNC 80

[Close]
BLAST of PI0022886 vs. NCBI nr
Match: KGN52439.1 (hypothetical protein Csa_009048 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 3.9e-16
Identity = 48/80 (60.00%), Postives = 56/80 (70.00%), Query Frame = 0 

Query: 1  MSRFSCSQFFIVFLLLSAAWMTMPKGANAKVCLDQLYIGCTAADECKNRCLAKYSNYSSS 60
          M++FSCS FFI F LLSAAW+ MP G +A  C  +LY GC   D C  +C  KY N SSS
Sbjct: 1  MAKFSCSLFFIGFFLLSAAWI-MPNGVSATKCETKLYDGCLPKD-CTQKCSDKYPN-SSS 60

Query: 61 ECVSMPPIPFHYVCLCFYSC 81
          ECV++PPIPFHY C CFY C
Sbjct: 61 ECVAVPPIPFHYSCYCFYDC 77

[Close]
BLAST of PI0022886 vs. NCBI nr
Match: RQO85045.1 (hypothetical protein POPTR_001G180750 [Populus trichocarpa])

HSP 1 Score: 55.5 bits (132), Expect = 2.6e-04
Identity = 30/80 (37.50%), Postives = 48/80 (60.00%), Query Frame = 0 

Query: 1  MSRFSCSQFFIVFLLLSAAWMTMPKGANAKVCLDQLYIGCTAADECKNRCLAKYSNYSSS 60
          M+R S ++FF +FL+LSAA +T P    AK CLD LY      ++C  +C  K+++    
Sbjct: 1  MARISFTRFFTLFLVLSAALVT-PHVNGAKRCLDILYKSGCNLEDCGAKCYKKHNSIHGG 60

Query: 61 ECVSMPPIPFHYVCLCFYSC 81
          +C++ P +   Y C+C Y+C
Sbjct: 61 QCIANPTMT-DYSCVCAYNC 78

The following BLAST results are available for this feature:
BLAST of PI0022886 vs.
Match NameE-valueIdentityDescription
BLAST of PI0022886 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KS761.1e-2474.07Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634340 PE=3 SV=1[more]
A0A0A0KU451.9e-1660.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G634350 PE=3 SV=1[more]
A0A3N7EI841.3e-0437.50Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G180750 PE=3 ... [more]
BLAST of PI0022886 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN52438.12.3e-2474.07hypothetical protein Csa_008032 [Cucumis sativus][more]
KGN52439.13.9e-1660.00hypothetical protein Csa_009048 [Cucumis sativus][more]
RQO85045.12.6e-0437.50hypothetical protein POPTR_001G180750 [Populus trichocarpa][more]
BLAST of PI0022886 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0022886.1PI0022886.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0050832 defense response to fungus
biological_process GO:0031640 killing of cells of other organism