PI0022853 (gene) Melon (PI 482460) v1

Overview


Name	PI0022853
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	LYR motif-containing protein At3g19508
Location	chr06: 10640490 .. 10641244 (-)
RNA-Seq Expression	PI0022853
Synteny	PI0022853

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTGGGCCATGATAAACAAAACAGGGCCTGAAATGAGGAATGATTCATGTAGTTAAGAAGAGGAAGAAGGAATTTGTTGGACCTAGAAGCGGTAAGACGACGGCGAAATTTGATCGGAGAGAAATGGAGAAGGCGCTGAGAATATACGGAGAAGTTTTGAGGTTAGTGAGGCGGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGCTAGAGAGAATTTCGTCAACTACAGAGAGGTCGATGCCAACGATGCCAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCCTTTGGGTTCTCAACAAGGTTTTTAACTCTTAAATTCTCCAATCTTGAATTTGTTGTTGTTTTTTTTTTCTTTTCTATGGATTTGTGGATCCGTTTTTAGAGGTTGTGATGATTGGCAGTATTCGGTGGATGGATCTGCGGCGGAAAAGCTGAAGGAGATCTGTTATAGTTAGTGGTGGGGATGAAGTAAATAGAATTCAGTAGAGGTAGGGAAGTGGAGGATTATGGATTCATAAAGAAAGTGAAGACGTAAATTGATATGATTTTGAGTGTTGTTGGATTTGTGTAAAAATAAAGAGTGAAGAACAGAGGTGGATCCATTTTTATGATATTGAATGTTGTTGGATTTGTTTTGGATTGTTATTAAAACAATGTTCTCTTCCAAACTTAACGGCATGTCAAAACTTTTGATGAACAATAATGAGAAATTAGAAAAATGGAAATTATCTATTTTA

mRNA sequence

ATTGGGCCATGATAAACAAAACAGGGCCTGAAATGAGGAATGATTCATGTAGTTAAGAAGAGGAAGAAGGAATTTGTTGGACCTAGAAGCGGTAAGACGACGGCGAAATTTGATCGGAGAGAAATGGAGAAGGCGCTGAGAATATACGGAGAAGTTTTGAGGTTAGTGAGGCGGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGCTAGAGAGAATTTCGTCAACTACAGAGAGGTCGATGCCAACGATGCCAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCCTTTGGGTTCTCAACAAGTATTCGGTGGATGGATCTGCGGCGGAAAAGCTGAAGGAGATCTGTTATAGTTAGTGGTGGGGATGAAGTAAATAGAATTCAGTAGAGGTAGGGAAGTGGAGGATTATGGATTCATAAAGAAAGTGAAGACGTAAATTGATATGATTTTGAGTGTTGTTGGATTTGTGTAAAAATAAAGAGTGAAGAACAGAGGTGGATCCATTTTTATGATATTGAATGTTGTTGGATTTGTTTTGGATTGTTATTAAAACAATGTTCTCTTCCAAACTTAACGGCATGTCAAAACTTTTGATGAACAATAATGAGAAATTAGAAAAATGGAAATTATCTATTTTA

Coding sequence (CDS)

ATGATTCATGTAGTTAAGAAGAGGAAGAAGGAATTTGTTGGACCTAGAAGCGGTAAGACGACGGCGAAATTTGATCGGAGAGAAATGGAGAAGGCGCTGAGAATATACGGAGAAGTTTTGAGGTTAGTGAGGCGGTTACCTAAGGACACAAGGCCTTACTACGCCAAATACGCTAGAGAGAATTTCGTCAACTACAGAGAGGTCGATGCCAACGATGCCAAATCCCTAGAAGAACTCTTCCACAGAGCTTACAACCACTCCCTTTGGGTTCTCAACAAGTATTCGGTGGATGGATCTGCGGCGGAAAAGCTGAAGGAGATCTGTTATAGTTAG

Protein sequence

MIHVVKKRKKEFVGPRSGKTTAKFDRREMEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSLWVLNKYSVDGSAAEKLKEICYS

Homology

[Close]

BLAST of PI0022853 vs. ExPASy Swiss-Prot
Match: Q1G3M2 (LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19508 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 9.4e-29
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 29  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 88
           M+K LR+YG V+RLVR LP D+RPYYAKYARENFVNYREVD ++  SL+ELF RAYNHSL
Sbjct: 1   MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 89  WVLNKYSVDGSAAEKLKEICY 110
           WVL KYS+D SAA KLKEIC+
Sbjct: 61  WVLKKYSIDESAATKLKEICF 80

[Close]

BLAST of PI0022853 vs. ExPASy Swiss-Prot
Match: A9SNJ1 (LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrium patens OX=3218 GN=PHYPADRAFT_186863 PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-10
Identity = 32/58 (55.17%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 36 YGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSLWVLNK 94
          Y EVL+LV+RLP  +R YYA+YARENFV Y EV+  D +S+  L  R ++H+ WVL K
Sbjct: 9  YREVLKLVKRLPPPSRGYYAQYARENFVTYSEVE--DPESIRSLLARVHHHTCWVLKK 64

[Close]

BLAST of PI0022853 vs. ExPASy TrEMBL
Match: A0A5A7T6G8 (LYR motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G00680 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.8e-38
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 29  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 88
           MEKALR+YGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL
Sbjct: 1   MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 89  WVLNKYSVDGSAAEKLKEICYS 111
           WVLNKYSVDGSAA+KLKEICYS
Sbjct: 61  WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of PI0022853 vs. ExPASy TrEMBL
Match: A0A1S3C3W4 (LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 1.8e-38
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 29  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 88
           MEKALR+YGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL
Sbjct: 1   MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 89  WVLNKYSVDGSAAEKLKEICYS 111
           WVLNKYSVDGSAA+KLKEICYS
Sbjct: 61  WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of PI0022853 vs. ExPASy TrEMBL
Match: A0A0A0L970 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.2e-36
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 29  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 88
           MEKALR+YGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHSL
Sbjct: 1   MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 89  WVLNKYSVDGSAAEKLKEICY 110
           WVLNKYSVDGSAA+KLKEICY
Sbjct: 61  WVLNKYSVDGSAADKLKEICY 81

[Close]

BLAST of PI0022853 vs. ExPASy TrEMBL
Match: A0A6J1FPX9 (LYR motif-containing protein At3g19508 OS=Cucurbita moschata OX=3662 GN=LOC111447159 PE=4 SV=1)

HSP 1 Score: 158.3 bits (399), Expect = 1.8e-35
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 29  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 88
           MEKALRIY EVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHS+
Sbjct: 1   MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60

Query: 89  WVLNKYSVDGSAAEKLKEICYS 111
           WVLNKYSV+GSAA+KLKEIC S
Sbjct: 61  WVLNKYSVNGSAADKLKEICNS 82

[Close]

BLAST of PI0022853 vs. ExPASy TrEMBL
Match: A0A6P4A9N6 (LYR motif-containing protein At3g19508 OS=Ziziphus jujuba OX=326968 GN=LOC107427002 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.1e-35
Identity = 73/82 (89.02%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 29  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 88
           MEKALRIYGE+LRLVRRLPKDTRPYYAKYARENFVNYREVDAND+ +LEELFHRAYNHS+
Sbjct: 1   MEKALRIYGEILRLVRRLPKDTRPYYAKYARENFVNYREVDANDSIALEELFHRAYNHSI 60

Query: 89  WVLNKYSVDGSAAEKLKEICYS 111
           WVLNKYSVD SAA+KLKE+CY+
Sbjct: 61  WVLNKYSVDQSAADKLKEVCYN 82

[Close]

BLAST of PI0022853 vs. NCBI nr
Match: XP_008456173.1 (PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo] >KAA0037191.1 LYR motif-containing protein [Cucumis melo var. makuwa] >TYK13881.1 LYR motif-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 168.3 bits (425), Expect = 3.7e-38
Identity = 80/82 (97.56%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 29  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 88
           MEKALR+YGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL
Sbjct: 1   MEKALRVYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 60

Query: 89  WVLNKYSVDGSAAEKLKEICYS 111
           WVLNKYSVDGSAA+KLKEICYS
Sbjct: 61  WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of PI0022853 vs. NCBI nr
Match: XP_038898400.1 (LYR motif-containing protein At3g19508 [Benincasa hispida])

HSP 1 Score: 164.9 bits (416), Expect = 4.1e-37
Identity = 79/82 (96.34%), Postives = 81/82 (98.78%), Query Frame = 0


Query: 29  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 88
           MEKALRIYGEVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELFHRAY HSL
Sbjct: 1   MEKALRIYGEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYKHSL 60

Query: 89  WVLNKYSVDGSAAEKLKEICYS 111
           WVLNKYSVDGSAA+KLKEICYS
Sbjct: 61  WVLNKYSVDGSAADKLKEICYS 82

[Close]

BLAST of PI0022853 vs. NCBI nr
Match: XP_004140718.1 (LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetical protein Csa_011093 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 4.5e-36
Identity = 76/81 (93.83%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 29  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 88
           MEKALR+YGEVLRLVR+LPKDTRPYYAKY RENFVNYREVDA DAKSLEELFHRAYNHSL
Sbjct: 1   MEKALRVYGEVLRLVRQLPKDTRPYYAKYVRENFVNYREVDAQDAKSLEELFHRAYNHSL 60

Query: 89  WVLNKYSVDGSAAEKLKEICY 110
           WVLNKYSVDGSAA+KLKEICY
Sbjct: 61  WVLNKYSVDGSAADKLKEICY 81

[Close]

BLAST of PI0022853 vs. NCBI nr
Match: XP_022941949.1 (LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR motif-containing protein At3g19508 [Cucurbita pepo subsp. pepo] >KAG6600304.1 LYR motif-containing protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7030964.1 LYR motif-containing protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.3 bits (399), Expect = 3.8e-35
Identity = 76/82 (92.68%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 29  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 88
           MEKALRIY EVLRLVRRLPKD+RPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHS+
Sbjct: 1   MEKALRIYAEVLRLVRRLPKDSRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSV 60

Query: 89  WVLNKYSVDGSAAEKLKEICYS 111
           WVLNKYSV+GSAA+KLKEIC S
Sbjct: 61  WVLNKYSVNGSAADKLKEICNS 82

[Close]

BLAST of PI0022853 vs. NCBI nr
Match: XP_015892821.1 (LYR motif-containing protein At3g19508 [Ziziphus jujuba])

HSP 1 Score: 157.5 bits (397), Expect = 6.5e-35
Identity = 73/82 (89.02%), Postives = 80/82 (97.56%), Query Frame = 0


Query: 29  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 88
           MEKALRIYGE+LRLVRRLPKDTRPYYAKYARENFVNYREVDAND+ +LEELFHRAYNHS+
Sbjct: 1   MEKALRIYGEILRLVRRLPKDTRPYYAKYARENFVNYREVDANDSIALEELFHRAYNHSI 60

Query: 89  WVLNKYSVDGSAAEKLKEICYS 111
           WVLNKYSVD SAA+KLKE+CY+
Sbjct: 61  WVLNKYSVDQSAADKLKEVCYN 82

[Close]

BLAST of PI0022853 vs. TAIR 10
Match: AT3G19508.1 (unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 34; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 127.5 bits (319), Expect = 6.7e-30
Identity = 61/81 (75.31%), Postives = 70/81 (86.42%), Query Frame = 0


Query: 29  MEKALRIYGEVLRLVRRLPKDTRPYYAKYARENFVNYREVDANDAKSLEELFHRAYNHSL 88
           M+K LR+YG V+RLVR LP D+RPYYAKYARENFVNYREVD ++  SL+ELF RAYNHSL
Sbjct: 1   MKKVLRVYGGVMRLVRLLPADSRPYYAKYARENFVNYREVDQSET-SLDELFQRAYNHSL 60

Query: 89  WVLNKYSVDGSAAEKLKEICY 110
           WVL KYS+D SAA KLKEIC+
Sbjct: 61  WVLKKYSIDESAATKLKEICF 80

The following BLAST results are available for this feature:

BLAST of PI0022853 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q1G3M2	9.4e-29	75.31	LYR motif-containing protein At3g19508 OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
A9SNJ1	2.6e-10	55.17	LYR motif-containing protein PHYPADRAFT_186863 OS=Physcomitrium patens OX=3218 G...	[more]

BLAST of PI0022853 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T6G8	1.8e-38	97.56	LYR motif-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S3C3W4	1.8e-38	97.56	LYR motif-containing protein At3g19508 OS=Cucumis melo OX=3656 GN=LOC103496191 P...	[more]
A0A0A0L970	2.2e-36	93.83	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G199560 PE=4 SV=1	[more]
A0A6J1FPX9	1.8e-35	92.68	LYR motif-containing protein At3g19508 OS=Cucurbita moschata OX=3662 GN=LOC11144...	[more]
A0A6P4A9N6	3.1e-35	89.02	LYR motif-containing protein At3g19508 OS=Ziziphus jujuba OX=326968 GN=LOC107427...	[more]

BLAST of PI0022853 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456173.1	3.7e-38	97.56	PREDICTED: LYR motif-containing protein At3g19508 [Cucumis melo] >KAA0037191.1 L...	[more]
XP_038898400.1	4.1e-37	96.34	LYR motif-containing protein At3g19508 [Benincasa hispida]	[more]
XP_004140718.1	4.5e-36	93.83	LYR motif-containing protein At3g19508 [Cucumis sativus] >KGN57494.1 hypothetica...	[more]
XP_022941949.1	3.8e-35	92.68	LYR motif-containing protein At3g19508 [Cucurbita moschata] >XP_023512988.1 LYR ...	[more]
XP_015892821.1	6.5e-35	89.02	LYR motif-containing protein At3g19508 [Ziziphus jujuba]	[more]

BLAST of PI0022853 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19508.1	6.7e-30	75.31	unknown protein; LOCATED IN: mitochondrion; Has 34 Blast hits to 34 proteins in ...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008011	Complex 1 LYR protein	PFAM	PF05347	Complex1_LYR	coord: 32..84 e-value: 4.7E-5 score: 23.4
None	No IPR available	PANTHER	PTHR36758	OS01G0342800 PROTEIN	coord: 28..109
None	No IPR available	CDD	cd20269	Complex1_LYR_LYRM9	coord: 32..93 e-value: 3.41011E-22 score: 80.3639

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0022853.1	PI0022853.1	mRNA