PI0022746 (gene) Melon (PI 482460) v1

Overview


Name	PI0022746
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr04: 28914158 .. 28914522 (-)
RNA-Seq Expression	PI0022746
Synteny	PI0022746

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAACACAATACACAGCCAAGAATCGGAGGGGACGGTAACGGCGGAGAATCAGAAAGAGGGCAAAACTCGATGCCCGCAAGAACTGGTTAAAGTCTTAACAGAAAAAGAAATTGAAAATTAACTGTGAAATTGAGAAGATTAGGGATTTGGAATAATGTTACAGAGTACAGAAGTGGATGATCAATGGCATAGAGAAGGAGAAGAAAGAAATCCCGCCGCCCTTGTTCTTGGTTTCTCTGTTTCTGTCCGTCGCTCGGTCGTTCAGTTCTGCCTTTCGATTTCCCCTCCACACTCATTTCGCTGCTTCACGGTCCTTTGTAAGCGGGTCGATGATCTCCAATTCTCCCACTGTCGGCCCATGA

mRNA sequence

ATGAAACACAATACACAGCCAAGAATCGGAGGGGACGGTAACGGCGGAGAATCAGAAAGAGGGCAAAACTCGATGCCCGCAAGAACTGAGAAGGAGAAGAAAGAAATCCCGCCGCCCTTGTTCTTGGTTTCTCTGTTTCTGTCCGTCGCTCGGTCGTTCAGTTCTGCCTTTCGATTTCCCCTCCACACTCATTTCGCTGCTTCACGGTCCTTTGTAAGCGGGTCGATGATCTCCAATTCTCCCACTGTCGGCCCATGA

Coding sequence (CDS)

ATGAAACACAATACACAGCCAAGAATCGGAGGGGACGGTAACGGCGGAGAATCAGAAAGAGGGCAAAACTCGATGCCCGCAAGAACTGAGAAGGAGAAGAAAGAAATCCCGCCGCCCTTGTTCTTGGTTTCTCTGTTTCTGTCCGTCGCTCGGTCGTTCAGTTCTGCCTTTCGATTTCCCCTCCACACTCATTTCGCTGCTTCACGGTCCTTTGTAAGCGGGTCGATGATCTCCAATTCTCCCACTGTCGGCCCATGA

Protein sequence

MKHNTQPRIGGDGNGGESERGQNSMPARTEKEKKEIPPPLFLVSLFLSVARSFSSAFRFPLHTHFAASRSFVSGSMISNSPTVGP

Homology

[Close]

BLAST of PI0022746 vs. ExPASy TrEMBL
Match: A0A0A0LDA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G857060 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 1.1e-27
Identity = 72/85 (84.71%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MKHNTQPRIGGDGNGGESERGQNSMPARTEKEKKEIPPPLFLVSLFLSVARSFSSAFRFP 60
          MK NTQP+IGG+GNGGESERGQNSM ARTE E+KEIPPPLF VSLFLSVA  FSS FRFP
Sbjct: 1  MKQNTQPKIGGEGNGGESERGQNSMSARTEMEEKEIPPPLFFVSLFLSVA-PFSSGFRFP 60

Query: 61 LHTHFAASRSFVSGSMISNSPTVGP 86
          LHTHFAASRSFVSGSM S SP VGP
Sbjct: 61 LHTHFAASRSFVSGSMYS-SPLVGP 83

[Close]

BLAST of PI0022746 vs. NCBI nr
Match: KGN59965.1 (hypothetical protein Csa_000935 [Cucumis sativus])

HSP 1 Score: 132.1 bits (331), Expect = 2.3e-27
Identity = 72/85 (84.71%), Postives = 75/85 (88.24%), Query Frame = 0


Query: 1  MKHNTQPRIGGDGNGGESERGQNSMPARTEKEKKEIPPPLFLVSLFLSVARSFSSAFRFP 60
          MK NTQP+IGG+GNGGESERGQNSM ARTE E+KEIPPPLF VSLFLSVA  FSS FRFP
Sbjct: 1  MKQNTQPKIGGEGNGGESERGQNSMSARTEMEEKEIPPPLFFVSLFLSVA-PFSSGFRFP 60

Query: 61 LHTHFAASRSFVSGSMISNSPTVGP 86
          LHTHFAASRSFVSGSM S SP VGP
Sbjct: 61 LHTHFAASRSFVSGSMYS-SPLVGP 83

The following BLAST results are available for this feature:

BLAST of PI0022746 vs.


Match Name	E-value	Identity	Description

BLAST of PI0022746 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDA4	1.1e-27	84.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G857060 PE=4 SV=1	[more]

BLAST of PI0022746 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59965.1	2.3e-27	84.71	hypothetical protein Csa_000935 [Cucumis sativus]	[more]

BLAST of PI0022746 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0022746.1	PI0022746.1	mRNA