PI0022670 (gene) Melon (PI 482460) v1

Overview


Name	PI0022670
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	signal recognition particle 19 kDa protein
Location	chr08: 15500037 .. 15503276 (-)
RNA-Seq Expression	PI0022670
Synteny	PI0022670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGGACCGGCCAAATTTATTACTTACAGGTTCCCGGTTCAACCCCACCTTCGTCTTACGATTCCAAGTCTTCCATCTCCGTCGCCTCGTCTCTCCGTCATCCAGTTTCAGTCTCCCTGATAGTCACGGTCTCAGCTGTTCTTCATTGTGTGAGGCATGCAAATCTTAAATTTTTGCTTTGATCTGTTTGACGAATTTGTAAATTTTAAATATTTTTCTTTTAGGATTATTACGATGTTTGTGTTTGTTTGAAGTGTGTAATTGATATCATTATGAGATTTTAGTTAGTAGTCATGTGTTGTAGACAGAATTAAGTATTTTACACCCTTAGCTGAGGGGTAGTTAGACCAATTTTACTAGGGTTCTTGTACCAAATATCCCATCGAACAATTTTATCATTCAAACAAGTGATGAAAACTAATGTGGTTGTTGGTCTTGTACATGGAGCAGTGTTAGGCTTGATTTGTTTAAAAAATGAACGACCAACATCGCAAGTACCTGTAATTATACGAGAACCATGGTGAATTGGTATAAGAATCCTTCGGTTAGGGGTGTTAAGGGGTTATAACTACTTTTGCAAAATGGATATATGCACACTTAGGTATATAATAAGTTGAAGAGACTATTAACAAGTTTTGTTTCTTACCAAACAAATAAATAAAAAGTAAAAGAGATTTTCTTAAATAATAAACAATCGATTATAATTTAGTTAATTTCTTTTTATTTGTATCATTTCTCGATATATGTGTGTCATCCTTGTGCAGTGGCGATACTATGTGTATCGTTCCAATTTTATCTAATGTCTCTGAAGGGACGACAAATTTGCGTTAATGATACTGGGTTGCACATTTTCTCTTTTTCTATGTGTTTCTGCTTTTTAGCTCAATCTATAGGCAAGTACCTGTGTCTACTATACCTCAGCTGAATCTGTATTATGCCAAATAGTTCTGTTATTTAATGCTCGAAGCTGGAAATCTCACTGAATTTTCAATTCGTAATGGCCCAATTTGGTGGTCAGATAAACAAAAACTGAAATGAGTTGAACAGTTTCTTGTCAAGACGCAAGAGAACAGTTTTATGAGTGTCTGAAGAATATATTTATTTTTTGCCCTATATATGATTGAATATGATTTGTAATGGGTATCTTTCATGTGCCATCGTAGGAATTTGGTTGGAACATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTACTGTATCCCATCTATATTAATTCAAAGAAGACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGCATGTGAGAATCCTACGTGTGTTGAGATTGGGGATTGCTGCGGTCATCTCAAACTGCCTTTTGCTATTGAGGTTTTCTAGCAATGATCTGTCTCTGTCATTGATAAAGATCTCCACTTCATATTAATTTTTGTTCTCCCTGCTGCCTGTTTGCGTCGAAGTTAGCTGCACTACATTGAGTTTATATGAACCTATGATAATTGATAGAATGTGTTAATTTAGATTAACAGCATTCCCGCAGATTGATAAAGCTTATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCTATTACTTCCAGTAAGGCTTCTGGTTGTCTCTTTGGACCCTTCTCATCCCTTGGAAAAAGACTTCTATTTATTACTGAAGTTTCAGTCTAATAGTGTAGTATTCTATCCCATAGTACATAGGCTATTGAATTTTTGCATGCATGAATACATTAACTGTGTGGTTTTTACATCAATTAGATTTATTAACATGGAATTAGTCCATAAAGAGACAGTGGAGACTAGCCAAAAATCAGGGAAGCTCTCTGAATCCTTCACCCATTAAGATTGAAGTAGTTGTCTACTTTTCATTAGCAATATTGTAATAAACTGTTAATCAAACATATATTTTGCTTATTAAGCAAAGAAAAGTATTGCTTCTAAGTAGTTCCTTTCAGCATCCATATGATTTATGAAAAGGAGAACCCCTCCTCCAGTTTGATCGAGACACCCTTACGTTTTTTAGGAGCATACAATGAACTTGAGAATTCTGTTTGAAGCTCATTTCAAACCAAGCAGCTCTCTTTAGGAATGAAACAAATTCCCACCCTTTTTCTCTTTATATTGCCCCTTTGATTTTGAGCCTTTCCATGCTACCTTTCAGCAGATCAAATCAACTGACTTTATGGTGCTGAATTTTGGCTGGGGGATTCTCTAAAACTATAACTTAAACTATACTGCTTGACTAACCAACCAACTAATCCCTACCGTTGCACCTGTTAAAGTAGTTAGGATAATGTATGTTTCTAGCAGATACTACAGTTTGTCCAACCTTCTTCCAAAAAATCGTTTTTGTAAAAGTTCTGTTAATTTAGGAGTTCAAACAATAAACCTTTAGACTTGTGTCTATTTGGTCTTTGAACTCTAAAAAGTGTTTAATTGGCTCTTAAATTTTCAATTTTGTATTCAGTAAGTCCTTGAACTTTAAACTTTAAATTTTTTGTATAATAGGGCCCTAAATTTTTAATCTTGTGTCTAAATATCTCCCTAGACTTTTAATCTTGCGTCTATTAGGTCATTTTCCCATTTCACGTTTTCTAAACCCCTAAAACCTATTATATACAAAATTGAAAGTTTATTCTTATTATTAGTGGAAATACCCTCGTGACTACAATTTTAGATATGATGTATCTGGCTATATTGCAGGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGAAGGACAAAGAAGCAGGAGCCTGCATCATCATCAACTGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAGTTACAATACATAATTACAAGAAACAGATTGTTATCGACCAGGCAAGCGGTTTCGTTTTTACATCTCGTTTCTTAATTCTTAGTGACATTTAAGTACTGGTGTTCTGCTCCGGCCCCCAACGAAACTAGACAATCGGTTTGTTTTGAACAATTTTGTAAAATAGTGGATCCTGGAGGTTTTTTTACTGAGATAGGAGAAAAGTGGATGAGAATTAGGTTTGAATTATTCAATCTTTTGCCTAAATCCTTATAGGTGAAATAACCTATCTATGAACATGGTTTTCATGTTTGGAGATTGAAAAATGTGGAAATTTCCAATACTTTGTTGTCATGGTCAGAATGTGGAAGTATGAAAATTTTGACACTTTTGCTTATAA

mRNA sequence

CTCGGACCGGCCAAATTTATTACTTACAGGTTCCCGGTTCAACCCCACCTTCGTCTTACGATTCCAAGTCTTCCATCTCCGTCGCCTCGTCTCTCCGTCATCCAGTTTCAGTCTCCCTGATAGTCACGGTCTCAGCTGTTCTTCATTGTGTGAGGCATGCAAATCTTAAATTTTTGCTTTGATCTGTTTGACGAATTTGTAAATTTTAAATATTTTTCTTTTAGGATTATTACGATGTTTGTGTTTGTTTGAAGTGTGTAATTGATATCATTATGAGATTTTAGTTAGTAGTCATGTGTTGTAGACAGAATTAAGTATTTTACACCCTTAGCTGAGGGGTAGTTAGACCAATTTTACTAGGGTTCTTGTACCAAATATCCCATCGAACAATTTTATCATTCAAACAAGTGATGAAAACTAATGTGGTTGTTGGTCTTGTACATGGAGCAGTGTTAGGCTTGATTTGTTTAAAAAATGAACGACCAACATCGCAAGTACCTGTAATTATACGAGAACCATGGTGAATTGGTATAAGAATCCTTCGGTTAGGGGTGTTAAGGGGTTATAACTACTTTTGCAAAATGGATATATGCACACTTAGGTATATAATAAGTTGAAGAGACTATTAACAAGTTTTGTTTCTTACCAAACAAATAAATAAAAAGTAAAAGAGATTTTCTTAAATAATAAACAATCGATTATAATTTAGTTAATTTCTTTTTATTTGTATCATTTCTCGATATATGTGTGTCATCCTTGTGCAGTGGCGATACTATGTGTATCGTTCCAATTTTATCTAATGTCTCTGAAGGGACGACAAATTTGCGTTAATGATACTGGGTTGCACATTTTCTCTTTTTCTATGTGTTTCTGCTTTTTAGCTCAATCTATAGGCAAGTACCTGTGTCTACTATACCTCAGCTGAATCTGTATTATGCCAAATAGTTCTGTTATTTAATGCTCGAAGCTGGAAATCTCACTGAATTTTCAATTCGTAATGGCCCAATTTGGTGGTCAGATAAACAAAAACTGAAATGAGTTGAACAGTTTCTTGTCAAGACGCAAGAGAACAGTTTTATGAGTGTCTGAAGAATATATTTATTTTTTGCCCTATATATGATTGAATATGATTTGTAATGGGTATCTTTCATGTGCCATCGTAGGAATTTGGTTGGAACATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTACTGTATCCCATCTATATTAATTCAAAGAAGACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGCATGTGAGAATCCTACGTGTGTTGAGATTGGGGATTGCTGCGGTCATCTCAAACTGCCTTTTGCTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCTATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGAAGGACAAAGAAGCAGGAGCCTGCATCATCATCAACTGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAGTTACAATACATAATTACAAGAAACAGATTGTTATCGACCAGGCAAGCGGTTTCGTTTTTACATCTCGTTTCTTAATTCTTAGTGACATTTAAGTACTGGTGTTCTGCTCCGGCCCCCAACGAAACTAGACAATCGGTTTGTTTTGAACAATTTTGTAAAATAGTGGATCCTGGAGGTTTTTTTACTGAGATAGGAGAAAAGTGGATGAGAATTAGGTTTGAATTATTCAATCTTTTGCCTAAATCCTTATAGGTGAAATAACCTATCTATGAACATGGTTTTCATGTTTGGAGATTGAAAAATGTGGAAATTTCCAATACTTTGTTGTCATGGTCAGAATGTGGAAGTATGAAAATTTTGACACTTTTGCTTATAA

Coding sequence (CDS)

ATGGATGGAGAAATTCCCAACATAAAGAGATGGGTAGTACTGTATCCCATCTATATTAATTCAAAGAAGACAATTGCTGAAGGAAGACGTATAGGTGTTAGCAAAGCATGTGAGAATCCTACGTGTGTTGAGATTGGGGATTGCTGCGGTCATCTCAAACTGCCTTTTGCTATTGAGATTGATAAAGCTTATCCTCGTGATTTCATGCAAAGAGGGAGAGTGCGGGTTCTGCTGAAGAAGGAGGATGGAACTCTGTCTAATCCAGCTATTACTTCCAGAAAACAACTGATGCTTCGTATAGCCGAACTTGTTCCTAGACATCCTGGAAGGACAAAGAAGCAGGAGCCTGCATCATCATCAACTGCAGGACCTTCAAAAGGCAAGGGTGGAAGAAAGAAGAAATAG

Protein sequence

MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSTAGPSKGKGGRKKK

Homology

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BLAST of PI0022670 vs. ExPASy Swiss-Prot
Match: P49964 (Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica OX=39947 GN=SRP19 PE=1 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 1.8e-50
Identity = 94/128 (73.44%), Postives = 112/128 (87.50%), Query Frame = 0


Query: 7   NIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYPR 66
           +IK+W V+YP+Y+NSKKT+AEGRRI   KAC +PTCVEI DCC HLK+P AIE+DKAYPR
Sbjct: 9   SIKKWNVIYPVYLNSKKTVAEGRRIASGKACPDPTCVEIADCCSHLKIPHAIELDKAYPR 68

Query: 67  DFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSSTAGPSK 126
           DF Q GRVRV LKK+DG+  NPAI ++KQLM++IAELVP+H GRTKKQEPA+SSTAG SK
Sbjct: 69  DFFQVGRVRVQLKKDDGSPVNPAIKTKKQLMIQIAELVPKHHGRTKKQEPAASSTAGTSK 128

Query: 127 GKGGRKKK 135
           GKGG+KKK
Sbjct: 129 GKGGKKKK 136

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BLAST of PI0022670 vs. ExPASy Swiss-Prot
Match: Q943Z6 (Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SRP19 PE=1 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 4.0e-50
Identity = 101/145 (69.66%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60
           MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C+EI DCC HLKLP A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQE----- 120
           DKAYPRDFMQ GRVRV LK+EDGTL NPAITSRK LM +IAELVPRHP R KKQE     
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQEAQKAK 120

Query: 121 ----PASSSTAGPS--KGKGGRKKK 135
                A++ST+G S   GKGG+KK+
Sbjct: 121 KQEPQATTSTSGTSSKSGKGGKKKR 145

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BLAST of PI0022670 vs. ExPASy Swiss-Prot
Match: Q9D7A6 (Signal recognition particle 19 kDa protein OS=Mus musculus OX=10090 GN=Srp19 PE=1 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 3.2e-23
Identity = 63/131 (48.09%), Postives = 82/131 (62.60%), Query Frame = 0


Query: 10  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D C  + L   +E +K Y     
Sbjct: 14  RFIFIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNAFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQ---EPASSSTA 129
           RD   RGRVRV LK+EDG+L      SRK +ML +AE++P+   RT+K    +P      
Sbjct: 74  RDVQFRGRVRVQLKQEDGSLCLVQFPSRKSVMLYVAEMIPKLKTRTQKSGGADPILQQGE 133

Query: 130 GPSKGKGGRKK 134
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

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BLAST of PI0022670 vs. ExPASy Swiss-Prot
Match: P09132 (Signal recognition particle 19 kDa protein OS=Homo sapiens OX=9606 GN=SRP19 PE=1 SV=3)

HSP 1 Score: 108.2 bits (269), Expect = 7.2e-23
Identity = 64/131 (48.85%), Postives = 81/131 (61.83%), Query Frame = 0


Query: 10  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D C  + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSST---A 129
           RD   RGRVRV LK+EDG+L      SRK +ML  AE++P+   RT+K   A  S     
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 130 GPSKGKGGRKK 134
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

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BLAST of PI0022670 vs. ExPASy Swiss-Prot
Match: Q5RBR1 (Signal recognition particle 19 kDa protein OS=Pongo abelii OX=9601 GN=SRP19 PE=1 SV=2)

HSP 1 Score: 108.2 bits (269), Expect = 7.2e-23
Identity = 64/131 (48.85%), Postives = 81/131 (61.83%), Query Frame = 0


Query: 10  RWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEIDKAYP---- 69
           R++ +YP Y+N+KKTIAEGRRI +SKA ENPT  EI D C  + L   +E +K Y     
Sbjct: 14  RFICIYPAYLNNKKTIAEGRRIPISKAVENPTATEIQDVCSAVGLNVFLEKNKMYSREWN 73

Query: 70  RDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSST---A 129
           RD   RGRVRV LK+EDG+L      SRK +ML  AE++P+   RT+K   A  S     
Sbjct: 74  RDVQYRGRVRVQLKQEDGSLCLVQFPSRKSVMLYAAEMIPKLKTRTQKTGGADQSLQQGE 133

Query: 130 GPSKGKGGRKK 134
           G  KGKG +KK
Sbjct: 134 GSKKGKGKKKK 144

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BLAST of PI0022670 vs. ExPASy TrEMBL
Match: A0A1S3AYC2 (signal recognition particle 19 kDa protein OS=Cucumis melo OX=3656 GN=LOC103483920 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 7.6e-68
Identity = 130/134 (97.01%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQLMLR+AELVPRHPGRTKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRVAELVPRHPGRTKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]

BLAST of PI0022670 vs. ExPASy TrEMBL
Match: A0A0A0L5F9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171080 PE=4 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 2.2e-67
Identity = 130/134 (97.01%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEI
Sbjct: 68  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 127

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS
Sbjct: 128 DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 187

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 188 TAGPSKGKGGRKKK 201

[Close]

BLAST of PI0022670 vs. ExPASy TrEMBL
Match: A0A6J1IY39 (signal recognition particle 19 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111479513 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 2.9e-67
Identity = 130/134 (97.01%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAI SRKQLMLRIAELVPRHPGR KKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]

BLAST of PI0022670 vs. ExPASy TrEMBL
Match: A0A6J1GUF8 (signal recognition particle 19 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC111457558 PE=4 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 3.8e-67
Identity = 129/134 (96.27%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60
           MDGEIPNIKRWVVLYP+YINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPVYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAI SRKQLMLRIAELVPRHPGR KKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAIPSRKQLMLRIAELVPRHPGRIKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]

BLAST of PI0022670 vs. ExPASy TrEMBL
Match: A0A6J1CAM2 (signal recognition particle 19 kDa protein OS=Momordica charantia OX=3673 GN=LOC111009488 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 6.5e-67
Identity = 130/135 (96.30%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60
           MDGE+PNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEI
Sbjct: 1   MDGEVPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQ+MLRIAELVPRHPGRTKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQMMLRIAELVPRHPGRTKKQEPASSS 120

Query: 121 TAGPSK-GKGGRKKK 135
           TAGPSK GKGGRKKK
Sbjct: 121 TAGPSKSGKGGRKKK 135

[Close]

BLAST of PI0022670 vs. NCBI nr
Match: XP_038879562.1 (signal recognition particle 19 kDa protein [Benincasa hispida])

HSP 1 Score: 268.9 bits (686), Expect = 2.4e-68
Identity = 132/134 (98.51%), Postives = 132/134 (98.51%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]

BLAST of PI0022670 vs. NCBI nr
Match: XP_004147903.1 (signal recognition particle 19 kDa protein [Cucumis sativus] >XP_004147904.1 signal recognition particle 19 kDa protein [Cucumis sativus] >XP_011653673.1 signal recognition particle 19 kDa protein [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 4.1e-68
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPA-SS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPA SS
Sbjct: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120

Query: 121 STAGPSKGKGGRKKK 135
           STAGPSKGKGGRKKK
Sbjct: 121 STAGPSKGKGGRKKK 135

[Close]

BLAST of PI0022670 vs. NCBI nr
Match: KGN54616.2 (hypothetical protein Csa_018066 [Cucumis sativus])

HSP 1 Score: 268.1 bits (684), Expect = 4.1e-68
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI
Sbjct: 84  MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 143

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPA-SS 120
           DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPA SS
Sbjct: 144 DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 203

Query: 121 STAGPSKGKGGRKKK 135
           STAGPSKGKGGRKKK
Sbjct: 204 STAGPSKGKGGRKKK 218

[Close]

BLAST of PI0022670 vs. NCBI nr
Match: XP_008438988.1 (PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo] >XP_008438989.1 PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo])

HSP 1 Score: 266.2 bits (679), Expect = 1.6e-67
Identity = 130/134 (97.01%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDGTLSNPAITSRKQLMLR+AELVPRHPGRTKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGTLSNPAITSRKQLMLRVAELVPRHPGRTKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]

BLAST of PI0022670 vs. NCBI nr
Match: XP_004147628.1 (signal recognition particle 19 kDa protein [Cucumis sativus] >XP_011651094.1 signal recognition particle 19 kDa protein [Cucumis sativus] >XP_031737658.1 signal recognition particle 19 kDa protein [Cucumis sativus] >XP_031737659.1 signal recognition particle 19 kDa protein [Cucumis sativus] >KAE8650411.1 hypothetical protein Csa_009637 [Cucumis sativus])

HSP 1 Score: 264.6 bits (675), Expect = 4.6e-67
Identity = 130/134 (97.01%), Postives = 130/134 (97.01%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60
           MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTC EIGDCC HLKLPFAIEI
Sbjct: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCAEIGDCCSHLKLPFAIEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120
           DKAYPRDFMQRGRVRV LKKEDG LSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS
Sbjct: 61  DKAYPRDFMQRGRVRVQLKKEDGALSNPAITSRKQLMLRIAELVPRHPGRTKKQEPASSS 120

Query: 121 TAGPSKGKGGRKKK 135
           TAGPSKGKGGRKKK
Sbjct: 121 TAGPSKGKGGRKKK 134

[Close]

BLAST of PI0022670 vs. TAIR 10
Match: AT1G48160.1 (signal recognition particle 19 kDa protein, putative / SRP19, putative )

HSP 1 Score: 198.7 bits (504), Expect = 2.9e-51
Identity = 101/145 (69.66%), Postives = 115/145 (79.31%), Query Frame = 0


Query: 1   MDGEIPNIKRWVVLYPIYINSKKTIAEGRRIGVSKACENPTCVEIGDCCGHLKLPFAIEI 60
           MD    NIK+WVV+YP+YINSKKT+AEGRRI VSK+CENP C+EI DCC HLKLP A+EI
Sbjct: 1   MDSGTINIKKWVVIYPVYINSKKTVAEGRRISVSKSCENPNCIEISDCCKHLKLPSAVEI 60

Query: 61  DKAYPRDFMQRGRVRVLLKKEDGTLSNPAITSRKQLMLRIAELVPRHPGRTKKQE----- 120
           DKAYPRDFMQ GRVRV LK+EDGTL NPAITSRK LM +IAELVPRHP R KKQE     
Sbjct: 61  DKAYPRDFMQVGRVRVQLKREDGTLLNPAITSRKHLMQKIAELVPRHPERVKKQEAQKAK 120

Query: 121 ----PASSSTAGPS--KGKGGRKKK 135
                A++ST+G S   GKGG+KK+
Sbjct: 121 KQEPQATTSTSGTSSKSGKGGKKKR 145

The following BLAST results are available for this feature:

BLAST of PI0022670 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49964	1.8e-50	73.44	Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica OX=39...	[more]
Q943Z6	4.0e-50	69.66	Signal recognition particle 19 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SR...	[more]
Q9D7A6	3.2e-23	48.09	Signal recognition particle 19 kDa protein OS=Mus musculus OX=10090 GN=Srp19 PE=...	[more]
P09132	7.2e-23	48.85	Signal recognition particle 19 kDa protein OS=Homo sapiens OX=9606 GN=SRP19 PE=1...	[more]
Q5RBR1	7.2e-23	48.85	Signal recognition particle 19 kDa protein OS=Pongo abelii OX=9601 GN=SRP19 PE=1...	[more]

BLAST of PI0022670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3AYC2	7.6e-68	97.01	signal recognition particle 19 kDa protein OS=Cucumis melo OX=3656 GN=LOC1034839...	[more]
A0A0A0L5F9	2.2e-67	97.01	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G171080 PE=4 SV=1	[more]
A0A6J1IY39	2.9e-67	97.01	signal recognition particle 19 kDa protein OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1GUF8	3.8e-67	96.27	signal recognition particle 19 kDa protein OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]
A0A6J1CAM2	6.5e-67	96.30	signal recognition particle 19 kDa protein OS=Momordica charantia OX=3673 GN=LOC...	[more]

BLAST of PI0022670 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879562.1	2.4e-68	98.51	signal recognition particle 19 kDa protein [Benincasa hispida]	[more]
XP_004147903.1	4.1e-68	99.26	signal recognition particle 19 kDa protein [Cucumis sativus] >XP_004147904.1 sig...	[more]
KGN54616.2	4.1e-68	99.26	hypothetical protein Csa_018066 [Cucumis sativus]	[more]
XP_008438988.1	1.6e-67	97.01	PREDICTED: signal recognition particle 19 kDa protein [Cucumis melo] >XP_0084389...	[more]
XP_004147628.1	4.6e-67	97.01	signal recognition particle 19 kDa protein [Cucumis sativus] >XP_011651094.1 sig...	[more]

BLAST of PI0022670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G48160.1	2.9e-51	69.66	signal recognition particle 19 kDa protein, putative / SRP19, putative	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002778	Signal recognition particle, SRP19 subunit	PFAM	PF01922	SRP19	coord: 13..106 e-value: 4.6E-29 score: 101.2
IPR002778	Signal recognition particle, SRP19 subunit	PANTHER	PTHR17453	SIGNAL RECOGNITION PARTICLE 19 KD PROTEIN	coord: 8..132
IPR036521	Signal recognition particle, subunit SRP19-like superfamily	GENE3D	3.30.56.30		coord: 2..119 e-value: 2.1E-43 score: 149.6
IPR036521	Signal recognition particle, subunit SRP19-like superfamily	SUPERFAMILY	69695	SRP19	coord: 6..109
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0022670.2	PI0022670.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006614	SRP-dependent cotranslational protein targeting to membrane
cellular_component	GO:0005786	signal recognition particle, endoplasmic reticulum targeting
cellular_component	GO:0048500	signal recognition particle
molecular_function	GO:0008312	7S RNA binding
molecular_function	GO:0004386	helicase activity