PI0022572 (gene) Melon (PI 482460) v1

Overview


Name	PI0022572
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	SWIB domain-containing protein
Location	chr08: 12147608 .. 12149917 (-)
RNA-Seq Expression	PI0022572
Synteny	PI0022572

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCAAACCTTCCTTTGGATTGGTATGGTTTCTTGGTTGGTTGGTTTCTTGGTTGCACTCCTATTATTCAAACACCCCGCCCCCCAACCAAAAACCTTCTTCTCCTTTTCGTAACCCCTCGCCTCGCCTGCAACCAGCTAAGCCACCGCTCCTCTCTTTCCAGCGCCGTCTCGTTTTCCCTATTTCTCTCTCAATAGGTTCCGTTCTATCAGCTCCATCCGATCGCTGTCGTTTGAGATCAGGTCCGCCGCTGGAGTCTGCGGCGTGCAAATTGTGTTGCCGTCTGAAGCCGCGGCCGGTTGCCGGATTTTTTATTTTTGGGTAAGATTTAATGGTTTTGTTAGGATTTTTCTTGAATGGGTTTTGGATGCCTAATGAGTTTTGGCCTAATTTTACGTTGCTCACAGTATTTGAGCCTTCAAACGTTATCTTTTGTGGATTTTGTTGGATTTTGGATTGAAGAATTGGAGTGGTTTTGAATCAAACAACTATTGGGTAAGTTGTGTTGGTGAGTTTGGAATGATTGAATGTTGAGAATTTGACGTAAAGGTTTAATTTAAATTTTGATTCCTGATTCAGTAATGTGATTCAAGGTAGTAGAAACTAGAGGAGGTTGGTTTGCTTGTATATATTTGGACTAATTTGAGGTAGTCTTACTACTGAAACTGCCCTTGAGCCAGACGACATAGACAGATGACATAGGCAGACGACATAGACAGTATGATATGGATTGACTTTTTCTGATAGATATAGAAAGGATTGATATGTACATAATTTCAGAAGTTGTATGATCATGATATTATTTGTATGTGGCTCGTTGTATTTATATGTGTGGGACTCTGAATTATGTTTCAAGTTAGATATGTTAGTGTTAATTGCCCTCCTACCCGTAGCTGTATCCCTTCTGAGGTTTGTGTTCCTTTGGGTTCATTAGAGGATGTGTTACTTCGGGTTCACTAGAGATTGTGTTCCTCTGGGTTCATTAGAGGTTGTGTTCCTCTGGGTTCACTAGAGGTTAAGGTCCTTCAGTCTCGCTAAAGGTTTGTGTTTCTTTAGCTTCGCCAGATAGAGGTTTGTCTTCCCTTCAGGATTCACCAGATTTATGGATACATCAGGTTTAATTATTCACCGAGATAACCATCCATGATTTGTTGATGTATGCATGCCGCACTAGTATGATTGCATTTATTGGGCATAAATGCGTAGCCTCATCCTGGTAGTGATGTTATTTACTGGGTACTTTATACTCATTCCTTATAGTGATATGTTTCTCAAGTTAAGGAAAAAACGTACCAGAGGCATTGGACGAGGGATTTGTTGACAGTGCCATGAGACTAGAGATGCTTCTGTTAAATTTCATGTTTTCATGTTTGATGTGAATGTTTTCATTGAGAACTGGTTAGTGTAGAAATTTGAGATTTAGATCTTGTTTTGGTTTTAGTGAGAAATTATGCATTTTAGAAAATTGTTGTTTTATATCAAAATGGTCAATTAGATTTGCTTCTAAAAATTGCATGTATAGTCTTTCTAAAAAAAAATAGCATGCATAATAGTAATGACCCAAGTGGAGGTTTCCAAAAGTCAGGTTGTTACACTTTCCAATTCTCAGAGGTTTTTCTTCTCCCTTTTCTCAGGTGGGAATCAAAACTATTTATCACAAGGTGCAATGAGGCGCAATTTCTTCTAGGGCTTAAGCACAAGACACAAAAAAAAACAAAAAAAGAAAGCACGGGTTTCTTTTTTTTCTTCGTAAAAGCATGGTTGAAGTGGAAATATGAAAAAACAGACCTCTAACCACAAAAAATTTTGCATTTAGGCTTAGTAAATTTGCTTTTTTAGTCAATAAAGAAGGGAAAACCCCAATTATTTCTATTTTTTAAAATAATAAAAAAGCCTCAAGGCATAGGCTTTTGAGCTTTGGGGCTTCACAAAAGGTGTGCCTTATTTTATGAGCCTTGCCTTTTCAAGGCAAGACCCCAAACCTATGCTTTGAGCCTAGGCGTGCAGCCTGGAGGGCTTTTTAAAACACTGTCCATGTTCCTGATTTCTGTGCTTTTAATTTTTTTTTTCTTTCTCTGAACTGGTTTCTTGATTTGAATTCGCTTGACTTCTTTTCTCTTGATTTCCTGAGGATTTTCTGTTAACTTTTGTGATTGAAACTTTATTGCACATAATCCATTTGATAAAATTCCCAAGAATCGATGGTCAGGTCTTGTGCAGGGCTTTCTGTTTTTCATATTTTCAAAACTTCATTCATCAGCTGAGTAAACAATTTTTTATGTATGTTGCCAGCGGAGGAACAAACTAG

mRNA sequence

ATGTCCAAACCTTCCTTTGGATTGGTATGGTTTCTTGGTTGGTTGGTTTCTTGGTTGCACTCCTATTATTCAAACACCCCGCCCCCCAACCAAAAACCTTCTTCTCCTTTTCGTAACCCCTCGCCTCGCCTGCAACCAGCTAAGCCACCGCTCCTCTCTTTCCAGCGCCGTCTCGTTTTCCCTATTTCTCTCTCAATAGGTTCCGTTCTATCAGCTCCATCCGATCGCTGTCGTTTGAGATCAGGTCCGCCGCTGGAGTCTGCGGCGTGCAAATTGTGTTGCCGTCTGAAGCCGCGGCCGGTTGCCGGATTTTTTATTTTTGGGTGGGAATCAAAACTATTTATCACAAGCGGAGGAACAAACTAG

Coding sequence (CDS)

ATGTCCAAACCTTCCTTTGGATTGGTATGGTTTCTTGGTTGGTTGGTTTCTTGGTTGCACTCCTATTATTCAAACACCCCGCCCCCCAACCAAAAACCTTCTTCTCCTTTTCGTAACCCCTCGCCTCGCCTGCAACCAGCTAAGCCACCGCTCCTCTCTTTCCAGCGCCGTCTCGTTTTCCCTATTTCTCTCTCAATAGGTTCCGTTCTATCAGCTCCATCCGATCGCTGTCGTTTGAGATCAGGTCCGCCGCTGGAGTCTGCGGCGTGCAAATTGTGTTGCCGTCTGAAGCCGCGGCCGGTTGCCGGATTTTTTATTTTTGGGTGGGAATCAAAACTATTTATCACAAGCGGAGGAACAAACTAG

Protein sequence

MSKPSFGLVWFLGWLVSWLHSYYSNTPPPNQKPSSPFRNPSPRLQPAKPPLLSFQRRLVFPISLSIGSVLSAPSDRCRLRSGPPLESAACKLCCRLKPRPVAGFFIFGWESKLFITSGGTN

Homology

[Close]

BLAST of PI0022572 vs. ExPASy TrEMBL
Match: A0A0A0L2E1 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G493210 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 1.2e-08
Identity = 35/57 (61.40%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 64  LSIGSVLSAPSDRCRLRSGPPLESAACKLCCRLKPRPVAGFFIFGWESKLFITSGGT 121
           +SI SVLSAPS RCR +SGPPL SAACKLCCR K  PVA    FG  + L  T   T
Sbjct: 39  ISISSVLSAPSGRCRFKSGPPLVSAACKLCCRQKLLPVAEVLNFGGGTNLLCTKMAT 95

[Close]

BLAST of PI0022572 vs. NCBI nr
Match: KGN55149.2 (hypothetical protein Csa_012337 [Cucumis sativus])

HSP 1 Score: 69.3 bits (168), Expect = 2.5e-08
Identity = 35/57 (61.40%), Postives = 38/57 (66.67%), Query Frame = 0


Query: 64  LSIGSVLSAPSDRCRLRSGPPLESAACKLCCRLKPRPVAGFFIFGWESKLFITSGGT 121
           +SI SVLSAPS RCR +SGPPL SAACKLCCR K  PVA    FG  + L  T   T
Sbjct: 36  ISISSVLSAPSGRCRFKSGPPLVSAACKLCCRQKLLPVAEVLNFGGGTNLLCTKMAT 92

The following BLAST results are available for this feature:

BLAST of PI0022572 vs.


Match Name	E-value	Identity	Description

BLAST of PI0022572 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L2E1	1.2e-08	61.40	SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_4G493210 PE=4 S...	[more]

BLAST of PI0022572 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN55149.2	2.5e-08	61.40	hypothetical protein Csa_012337 [Cucumis sativus]	[more]

BLAST of PI0022572 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..47
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0022572.1	PI0022572.1	mRNA