PI0022549 (gene) Melon (PI 482460) v1

Overview


Name	PI0022549
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5
Location	chr07: 22283858 .. 22284109 (+)
RNA-Seq Expression	PI0022549
Synteny	PI0022549

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGGGAGGCTTAAGCTTAACGTGGATGTGGCGTGTGGTCCAAACAGTCAAAGGTCGAGGGTGGGGGTTGTGATTTGCAATGAGCATGGTGATGTGGTGGCCGCTCAAGCATTGTTCTGTCAAGGTTGTGGACCTGTTGAGGTGAGTGAAATTACAACTATTATGATAGGGCTAATGGTGATCGAAGGTCTGGAATGCTTGAATGTTTGGATTGAGTCTGATGTGGAGGTTGTTGTGAAGCACTTCTAA

mRNA sequence

ATGAGAGGGAGGCTTAAGCTTAACGTGGATGTGGCGTGTGGTCCAAACAGTCAAAGGTCGAGGGTGGGGGTTGTGATTTGCAATGAGCATGGTGATGTGGTGGCCGCTCAAGCATTGTTCTGTCAAGGTTGTGGACCTGTTGAGGTGAGTGAAATTACAACTATTATGATAGGGCTAATGGTGATCGAAGGTCTGGAATGCTTGAATGTTTGGATTGAGTCTGATGTGGAGGTTGTTGTGAAGCACTTCTAA

Coding sequence (CDS)

ATGAGAGGGAGGCTTAAGCTTAACGTGGATGTGGCGTGTGGTCCAAACAGTCAAAGGTCGAGGGTGGGGGTTGTGATTTGCAATGAGCATGGTGATGTGGTGGCCGCTCAAGCATTGTTCTGTCAAGGTTGTGGACCTGTTGAGGTGAGTGAAATTACAACTATTATGATAGGGCTAATGGTGATCGAAGGTCTGGAATGCTTGAATGTTTGGATTGAGTCTGATGTGGAGGTTGTTGTGAAGCACTTCTAA

Protein sequence

MRGRLKLNVDVACGPNSQRSRVGVVICNEHGDVVAAQALFCQGCGPVEVSEITTIMIGLMVIEGLECLNVWIESDVEVVVKHF

Homology

[Close]

BLAST of PI0022549 vs. ExPASy TrEMBL
Match: A0A5A7T9F2 (G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold744G00930 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 1   MRGRLKLNVDVACGPNSQRSRVGVVICNEHGDVVAAQALFCQGCGPVEVSEITTIMIGLM 60
           MRGRLKLNVD+ACGPN   S VG VI + + D+VAAQ LFCQGCGPVE   +  + I   
Sbjct: 34  MRGRLKLNVDMACGPNKHGSGVGAVIRSANSDLVAAQVLFCQGCGPVEHFYVMNLTIFPF 93

Query: 61  VIEGLECLNVWIESDV 77
            +   EC+ ++  S++
Sbjct: 94  GVFYAECIVLFALSNI 109

[Close]

BLAST of PI0022549 vs. ExPASy TrEMBL
Match: A0A5D3BSC1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold775G00140 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 3.1e-11
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 1  MRGRLKLNVDVACGPNSQRSRVGVVICNEHGDVVAAQALFCQGCGPVEVSEITTIMIGLM 60
          MRGRLKLNVD+ACGPN   S VG VI + + D+VAAQ LFCQGCGPVE   +  + I   
Sbjct: 1  MRGRLKLNVDMACGPNKHGSGVGAVIRSANSDLVAAQVLFCQGCGPVEHFYVMNLTIFPF 60

Query: 61 VIEGLECLNVWIESDV 77
           +   EC+ ++  S++
Sbjct: 61 GVFYAECIVLFALSNI 76

[Close]

BLAST of PI0022549 vs. ExPASy TrEMBL
Match: A0A5A7SLR6 (RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00670 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.9e-09
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 7  LNVDVACGPNSQRSRVGVVICNEHGDVVAAQALFCQG-CGPVEVSEITTIMIGLMVIEGL 66
          ++VDVAC PN++ +  GVV+ N+ G++V AQA FC+G    VE  +I  IM GL ++EGL
Sbjct: 1  MSVDVACSPNNKGNGYGVVLRNDKGEIVLAQA-FCRGESFLVEAGKIMAIMFGLHLVEGL 60

Query: 67 ECLNVWIESDVEV 79
           C  VW++SD E+
Sbjct: 61 GCFEVWVQSDAEI 72

[Close]

BLAST of PI0022549 vs. NCBI nr
Match: KAA0039613.1 (G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 6.4e-11
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 1   MRGRLKLNVDVACGPNSQRSRVGVVICNEHGDVVAAQALFCQGCGPVEVSEITTIMIGLM 60
           MRGRLKLNVD+ACGPN   S VG VI + + D+VAAQ LFCQGCGPVE   +  + I   
Sbjct: 34  MRGRLKLNVDMACGPNKHGSGVGAVIRSANSDLVAAQVLFCQGCGPVEHFYVMNLTIFPF 93

Query: 61  VIEGLECLNVWIESDV 77
            +   EC+ ++  S++
Sbjct: 94  GVFYAECIVLFALSNI 109

[Close]

BLAST of PI0022549 vs. NCBI nr
Match: TYK01692.1 (hypothetical protein E5676_scaffold775G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 77.4 bits (189), Expect = 6.4e-11
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 0


Query: 1  MRGRLKLNVDVACGPNSQRSRVGVVICNEHGDVVAAQALFCQGCGPVEVSEITTIMIGLM 60
          MRGRLKLNVD+ACGPN   S VG VI + + D+VAAQ LFCQGCGPVE   +  + I   
Sbjct: 1  MRGRLKLNVDMACGPNKHGSGVGAVIRSANSDLVAAQVLFCQGCGPVEHFYVMNLTIFPF 60

Query: 61 VIEGLECLNVWIESDV 77
           +   EC+ ++  S++
Sbjct: 61 GVFYAECIVLFALSNI 76

[Close]

BLAST of PI0022549 vs. NCBI nr
Match: KAA0031982.1 (hypothetical protein E6C27_scaffold134G00730 [Cucumis melo var. makuwa] >TYK16802.1 hypothetical protein E5676_scaffold96G00670 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 6.0e-09
Identity = 35/73 (47.95%), Postives = 51/73 (69.86%), Query Frame = 0


Query: 7  LNVDVACGPNSQRSRVGVVICNEHGDVVAAQALFCQG-CGPVEVSEITTIMIGLMVIEGL 66
          ++VDVAC PN++ +  GVV+ N+ G++V AQA FC+G    VE  +I  IM GL ++EGL
Sbjct: 1  MSVDVACSPNNKGNGYGVVLRNDKGEIVLAQA-FCRGESFLVEAGKIMAIMFGLHLVEGL 60

Query: 67 ECLNVWIESDVEV 79
           C  VW++SD E+
Sbjct: 61 GCFEVWVQSDAEI 72

The following BLAST results are available for this feature:

BLAST of PI0022549 vs.


Match Name	E-value	Identity	Description

BLAST of PI0022549 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T9F2	3.1e-11	51.32	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 OS=Cucumis m...	[more]
A0A5D3BSC1	3.1e-11	51.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SLR6	2.9e-09	47.95	RNase H domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of PI0022549 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039613.1	6.4e-11	51.32	G-type lectin S-receptor-like serine/threonine-protein kinase SD2-5 [Cucumis mel...	[more]
TYK01692.1	6.4e-11	51.32	hypothetical protein E5676_scaffold775G00140 [Cucumis melo var. makuwa]	[more]
KAA0031982.1	6.0e-09	47.95	hypothetical protein E6C27_scaffold134G00730 [Cucumis melo var. makuwa] >TYK1680...	[more]

BLAST of PI0022549 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 8..81 e-value: 7.6E-12 score: 45.1
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 2..83 e-value: 3.5E-7 score: 32.3
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0022549.1	PI0022549.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity