PI0022481 (gene) Melon (PI 482460) v1

Overview
NamePI0022481
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionTranscription regulatory protein SNF2-like isoform X3
Locationchr09: 5098050 .. 5098449 (-)
RNA-Seq ExpressionPI0022481
SyntenyPI0022481
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTACTCTCGCATACCCTCATGATCTCTTTCCTGCATCACTCGCAGCTTCTCCATCCAATCGCACGTCTATCCTTGTGATCGGTGACCCCGTCCTTCATACCGGAGACAACTGTTTCACCAAAGAACACCCTGTCAGGTAGATTTTCCAACTTTTTGTGGACTAATCTTCACGACCCAACTGGTTGGGTCTCACCATACCAATGGCAGCACAATAATTGAATTCATTTAATCTCTCTACTTTTAGTAACAGTTGTGTTAACTGCAGGTCTGTCCATGGTCTTTTGTCGTCAGAATAAGGCAGAAAAGGTAAGTAGAATATTAGATTCTTTTGTGTTCCTTAATGACCAAGTGTCTGTAGGATTAATTGATTATATTGTTAGATTAGTTAAGATATAG

mRNA sequence

ATGGTTACTCTCGCATACCCTCATGATCTCTTTCCTGCATCACTCGCAGCTTCTCCATCCAATCGCACGTCTATCCTTGTGATCGGTGACCCCGTCCTTCATACCGGAGACAACTGTTTCACCAAAGAACACCCTGCAGAAAAGGTAAGTAGAATATTAGATTCTTTTGTGTTCCTTAATGACCAAGTGTCTGTAGGATTAATTGATTATATTGTTAGATTAGTTAAGATATAG

Coding sequence (CDS)

ATGGTTACTCTCGCATACCCTCATGATCTCTTTCCTGCATCACTCGCAGCTTCTCCATCCAATCGCACGTCTATCCTTGTGATCGGTGACCCCGTCCTTCATACCGGAGACAACTGTTTCACCAAAGAACACCCTGCAGAAAAGGTAAGTAGAATATTAGATTCTTTTGTGTTCCTTAATGACCAAGTGTCTGTAGGATTAATTGATTATATTGTTAGATTAGTTAAGATATAG

Protein sequence

MVTLAYPHDLFPASLAASPSNRTSILVIGDPVLHTGDNCFTKEHPAEKVSRILDSFVFLNDQVSVGLIDYIVRLVKI
Homology
[Close]
BLAST of PI0022481 vs. ExPASy TrEMBL
Match: A0A0A0KPI2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570940 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 5.8e-12
Identity = 48/84 (57.14%), Postives = 50/84 (59.52%), Query Frame = 0 

Query: 1  MVTLAYPHDLFPASLAASPSNRTSILVIGDPVLHTGDNCF---TKEHPAE---------- 60
          MVTL YPHDLFPASL ASPSNR SILVI D VL T D  F   T  + A           
Sbjct: 6  MVTLEYPHDLFPASLPASPSNRMSILVISDSVLQTEDQLFHQRTVPYQANFPAFRGLSFF 65

Query: 61 ------KVSRILDSFVFLNDQVSV 66
                K+ RILDSFVFLNDQ SV
Sbjct: 66 MTQLGIKIGRILDSFVFLNDQASV 89

[Close]
BLAST of PI0022481 vs. ExPASy TrEMBL
Match: A0A5D3E3L6 (Transcription regulatory protein SNF2-like isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold426G00270 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 2.7e-09
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 1   MVTLAYPHDLFPASLAASPSNRTSILVIGDPVLHTGD 38
           MVTL YPHDLFPASLAASPSNRTSILVI D +LHTGD
Sbjct: 838 MVTLEYPHDLFPASLAASPSNRTSILVISDSILHTGD 874

[Close]
BLAST of PI0022481 vs. NCBI nr
Match: KGN51500.1 (hypothetical protein Csa_007900 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 1.2e-11
Identity = 48/84 (57.14%), Postives = 50/84 (59.52%), Query Frame = 0 

Query: 1  MVTLAYPHDLFPASLAASPSNRTSILVIGDPVLHTGDNCF---TKEHPAE---------- 60
          MVTL YPHDLFPASL ASPSNR SILVI D VL T D  F   T  + A           
Sbjct: 6  MVTLEYPHDLFPASLPASPSNRMSILVISDSVLQTEDQLFHQRTVPYQANFPAFRGLSFF 65

Query: 61 ------KVSRILDSFVFLNDQVSV 66
                K+ RILDSFVFLNDQ SV
Sbjct: 66 MTQLGIKIGRILDSFVFLNDQASV 89

[Close]
BLAST of PI0022481 vs. NCBI nr
Match: KAA0046320.1 (transcription regulatory protein SNF2-like isoform X3 [Cucumis melo var. makuwa] >TYK30484.1 transcription regulatory protein SNF2-like isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 70.9 bits (172), Expect = 5.6e-09
Identity = 33/37 (89.19%), Postives = 34/37 (91.89%), Query Frame = 0 

Query: 1   MVTLAYPHDLFPASLAASPSNRTSILVIGDPVLHTGD 38
           MVTL YPHDLFPASLAASPSNRTSILVI D +LHTGD
Sbjct: 838 MVTLEYPHDLFPASLAASPSNRTSILVISDSILHTGD 874

The following BLAST results are available for this feature:
BLAST of PI0022481 vs.
Match NameE-valueIdentityDescription
BLAST of PI0022481 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KPI25.8e-1257.14Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G570940 PE=4 SV=1[more]
A0A5D3E3L62.7e-0989.19Transcription regulatory protein SNF2-like isoform X3 OS=Cucumis melo var. makuw... [more]
BLAST of PI0022481 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN51500.11.2e-1157.14hypothetical protein Csa_007900 [Cucumis sativus][more]
KAA0046320.15.6e-0989.19transcription regulatory protein SNF2-like isoform X3 [Cucumis melo var. makuwa]... [more]
BLAST of PI0022481 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0022481.1PI0022481.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006334 nucleosome assembly
cellular_component GO:0000786 nucleosome
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding
molecular_function GO:0008168 methyltransferase activity