Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGACCGCACGGAGTCTCAGAGGAGCAACTTAACTTGAGAGCCTTCCCATTTTCTTTAACTGACACAGCCAAAAGATGGCTTTACTATCTAGAGCCAGGGTCCATCACAACTTGGGGTAGCCTTAAGAAAAAATTCTTAGAAATTTTTTTTCCTGCTTCTAGAGCTAATAACATTAGGAAAGAGATATACGGAATAAGACAAGCTTTTGGGGAGTCTTTGTCTGAATACTGGGAAAGGTTCAAGGAACTCTACGCTAGTTTCCCCCATCACCATATTTCAGACCCATCACTAATCCAATATTTATATTCTGGACTACTAACTATGGATAGAAATACAGTAGACGCTGCAGCAGGAGGTGCATTAGCTGACAAAACCCCTACTGAGGCGAGAGAGCTCATTTCAAGGATGGTAGAAAATTCACAAAACTTTGGGAATAGGGCATCCGAGCTCGACAATTCATTGACTGAGGAGGTAAGTGAACTTAAATCACAAATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCTAAGTGCGGGGTTTGCGATGTTGTCGGACATCCAAATGACAAGTGCCCAGACTTAATAGAAGAGGCAAAAGTCATTCGTAATTACGATCCCCATAGCAATACTTACAATGCCGGTTGGAGAGACAACCCAAATCTAAGGTGGGGGAACGACAACCAAAGACCTTCACAAGCAGCTTATTCTTCTTCTTCCTCTAATCAACGTACAAATCTAGAAGATCTAGTAAAAGCTCTAGCAACAAATACCTTCTCTTTCCAACAAGAAATGAAGCAACAAATTTCTCATCTCACAAGCGCGATTAGAAAATTAGAAAGAAAAGGCAAACTTCCGGTCCAACCGGACTACGTAAATGTAAGTGTCATCTCACTTAGAAGTGGTAAGATTCTTGAAACCGCTCCAAGTGAAGAAAAGGTAACTTCTAACCCTATCCTTCTTAATAATAATGATGAGAAAAAGGAAGAAAAATTAGAAACAAATGCTCTACCATCAAGTTCTAATAAAGGTAAATCTCACATTCTTGACTATACTCCATATATTCCTAAAGCTCCTTTTCCTTCCAGGTTAGCTCCAAAGAAAAAAGAAACACCTAAGGAAGAAGAACTTTTGGAAATCTTCAAAAAGGTGCAAATCAATTTTCCTTTACTTGACGCTATCCAGCAAGTTCCAAGGTATGCAAAATTTTTAAAGGAATTATGCACCAATAAGAGGAAAATCAAAGAAAAACCGATGGTAAGCCACAACGTTTCTGCTCTTTTCAAAAACAATATACCGAAAAAATACAATGATCCAGGTATGTTTTCTTTTCCTTGTATAATAGGTAAAAAATTAATATATCATGCAATGCTTGACTTAGGAGCATCTATAAATGTCATGCCATTAAATGTTTTTAAAGATCTAGAACTCAACAATTTACAAAAAACTAATGTACGCATACAGCTAGCGGATGGATCTTTTATTCTATCATTAGGAATAGTTGAAGATGTTCTAGTCAAAATTGACAAATTAATTTTTCTGGCAGATTTTTACATTATAGAAATGAATCAAGAATGTATGAAATCATCTCATTCTATTTTATTAGGAAGACCTTTTCTTAAAACCGCTTAAGCTATCATAAATGTAGATAAAGGCTCCCTAACTGTAGAATTTGATGGATACATTCAACATTTTTTAACCAATAAAAAATCTGGATAAATCTTTGTCCTTATGCTCATTGCAATTGCATGAAGAGAATAACAAGTTTCCTTTGCCAAATATATTTTTGGAAAGAATATTACTAAAAAGTTGCTAAAATCTAATGTTGATCTTGAATCAGAGAAAAATAATTTTCTCTTCTCTTCACAAAATTTAATAAATGAACTTAACATTACTCTCTTATCCCTCCTTGACTTTTTTAATGAAATAGCCTCTTTACTTGCTTCTACTAACCTCGTCAATTCAAAACACAAGCAAGCAAAGACAAGAACAATAAAGATGAATGGAGGAACCAAACCCAAGATCATAGATCCGGGTTGA
mRNA sequence
ATGAGACCGCACGGAGTCTCAGAGGAGCAACTTAACTTGAGAGCCTTCCCATTTTCTTTAACTGACACAGCCAAAAGATGGCTTTACTATCTAGAGCCAGGGTCCATCACAACTTGGGGTAGCCTTAAGAAAAAATTCTTAGAAATTTTTTTTCCTGCTTCTAGAGCTAATAACATTAGGAAAGAGATATACGGAATAAGACAAGCTTTTGGGGAGTCTTTGTCTGAATACTGGGAAAGGTTCAAGGAACTCTACGCTAGTTTCCCCCATCACCATATTTCAGACCCATCACTAATCCAATATTTATATTCTGGACTACTAACTATGGATAGAAATACAGTAGACGCTGCAGCAGGAGGTGCATTAGCTGACAAAACCCCTACTGAGGCGAGAGAGCTCATTTCAAGGATGGTAGAAAATTCACAAAACTTTGGGAATAGGGCATCCGAGCTCGACAATTCATTGACTGAGGAGGTAAGTGAACTTAAATCACAAATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCTAAGTGCGGGGTTTGCGATGTTGTCGGACATCCAAATGACAAGTGCCCAGACTTAATAGAAGAGGCAAAAGTCATTCGTAATTACGATCCCCATAGCAATACTTACAATGCCGGTTGGAGAGACAACCCAAATCTAAGGTGGGGGAACGACAACCAAAGACCTTCACAAGCAGCTTATTCTTCTTCTTCCTCTAATCAACGTACAAATCTAGAAGATCTAGTAAAAGCTCTAGCAACAAATACCTTCTCTTTCCAACAAGAAATGAAGCAACAAATTTCTCATCTCACAAGCGCGATTAGAAAATTAGAAAGAAAAGGCAAACTTCCGGTCCAACCGGACTACGTAAATGTAAGTGTCATCTCACTTAGAAGTGGTAAGATTCTTGAAACCGCTCCAAGTGAAGAAAAGGTAACTTCTAACCCTATCCTTCTTAATAATAATGATGAGAAAAAGGAAGAAAAATTAGAAACAAATGCTCTACCATCAAGTTCTAATAAAGCCTCTTTACTTGCTTCTACTAACCTCGTCAATTCAAAACACAAGCAAGCAAAGACAAGAACAATAAAGATGAATGGAGGAACCAAACCCAAGATCATAGATCCGGGTTGA
Coding sequence (CDS)
ATGAGACCGCACGGAGTCTCAGAGGAGCAACTTAACTTGAGAGCCTTCCCATTTTCTTTAACTGACACAGCCAAAAGATGGCTTTACTATCTAGAGCCAGGGTCCATCACAACTTGGGGTAGCCTTAAGAAAAAATTCTTAGAAATTTTTTTTCCTGCTTCTAGAGCTAATAACATTAGGAAAGAGATATACGGAATAAGACAAGCTTTTGGGGAGTCTTTGTCTGAATACTGGGAAAGGTTCAAGGAACTCTACGCTAGTTTCCCCCATCACCATATTTCAGACCCATCACTAATCCAATATTTATATTCTGGACTACTAACTATGGATAGAAATACAGTAGACGCTGCAGCAGGAGGTGCATTAGCTGACAAAACCCCTACTGAGGCGAGAGAGCTCATTTCAAGGATGGTAGAAAATTCACAAAACTTTGGGAATAGGGCATCCGAGCTCGACAATTCATTGACTGAGGAGGTAAGTGAACTTAAATCACAAATGCTTAATATGACTACTTTACTAACTTCCTTTGTGCAAGGTGGATCTGTTAAAGTTGCTAAGTGCGGGGTTTGCGATGTTGTCGGACATCCAAATGACAAGTGCCCAGACTTAATAGAAGAGGCAAAAGTCATTCGTAATTACGATCCCCATAGCAATACTTACAATGCCGGTTGGAGAGACAACCCAAATCTAAGGTGGGGGAACGACAACCAAAGACCTTCACAAGCAGCTTATTCTTCTTCTTCCTCTAATCAACGTACAAATCTAGAAGATCTAGTAAAAGCTCTAGCAACAAATACCTTCTCTTTCCAACAAGAAATGAAGCAACAAATTTCTCATCTCACAAGCGCGATTAGAAAATTAGAAAGAAAAGGCAAACTTCCGGTCCAACCGGACTACGTAAATGTAAGTGTCATCTCACTTAGAAGTGGTAAGATTCTTGAAACCGCTCCAAGTGAAGAAAAGGTAACTTCTAACCCTATCCTTCTTAATAATAATGATGAGAAAAAGGAAGAAAAATTAGAAACAAATGCTCTACCATCAAGTTCTAATAAAGCCTCTTTACTTGCTTCTACTAACCTCGTCAATTCAAAACACAAGCAAGCAAAGACAAGAACAATAAAGATGAATGGAGGAACCAAACCCAAGATCATAGATCCGGGTTGA
Protein sequence
MRPHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEIFFPASRANNIRKEIYGIRQAFGESLSEYWERFKELYASFPHHHISDPSLIQYLYSGLLTMDRNTVDAAAGGALADKTPTEARELISRMVENSQNFGNRASELDNSLTEEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCDVVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNPNLRWGNDNQRPSQAAYSSSSSNQRTNLEDLVKALATNTFSFQQEMKQQISHLTSAIRKLERKGKLPVQPDYVNVSVISLRSGKILETAPSEEKVTSNPILLNNNDEKKEEKLETNALPSSSNKASLLASTNLVNSKHKQAKTRTIKMNGGTKPKIIDPG
Homology
BLAST of PI0022478 vs. ExPASy TrEMBL
Match:
A0A5A7SRF5 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00500 PE=4 SV=1)
HSP 1 Score: 526.2 bits (1354), Expect = 1.2e-145
Identity = 268/351 (76.35%), Postives = 306/351 (87.18%), Query Frame = 0
Query: 1 MRPHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEIFFPASRANNIR 60
MRPHG+SEEQLNLRAFPFSLTD AKRWLYYLEPGSITTWGSLKKKFLE FFPASR NNIR
Sbjct: 128 MRPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRTNNIR 187
Query: 61 KEIYGIRQAFGESLSEYWERFKELYASFPHHHISDPSLIQYLYSGLLTMDRNTVDAAAGG 120
KEIYGIRQAFGESL +YWE+FKEL A+FPHHHI PSLIQY Y GLL+ DRNTVDAAAGG
Sbjct: 188 KEIYGIRQAFGESLLKYWEKFKELCANFPHHHIFYPSLIQYFYFGLLSSDRNTVDAAAGG 247
Query: 121 ALADKTPTEARELISRMVENSQNFGNRASELDNSLTEEVSELKSQMLNMTTLLTSFVQGG 180
ALA+K PTEARELISRM +NSQ FGNRASEL+NSLT+EVSELKSQMLNMTTLLTSFVQG
Sbjct: 248 ALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNMTTLLTSFVQGT 307
Query: 181 SVKVAKCGVCDVVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNPNLRWGNDNQRPS 240
+KV KC VC +VGHPNDKCP++IEE +++ YDP+SNTYN GWRDNP LRWGNDNQ+ +
Sbjct: 308 PLKVTKCRVCGLVGHPNDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPILRWGNDNQKHT 367
Query: 241 QAAYSSSSSNQRTNLEDLVKALATNTFSFQQEMKQQISHLTSAIRKLERKGKLPVQPDYV 300
QA ++SSNQ TNL+D++KALATNT SFQQEMKQQ++ LT+ I K++ KGKLP QP++
Sbjct: 368 QA--PTTSSNQSTNLKDIIKALATNTLSFQQEMKQQMTQLTTTISKMDGKGKLPAQPNHA 427
Query: 301 NVSVISLRSGKILET-APSEEKVTSNPILLNNNDEKKEEKLETNALPSSSN 351
NVSVISLRSGKIL+T + E+KVTS P+ LN+ +E KEEK+ETN PS SN
Sbjct: 428 NVSVISLRSGKILDTPSTKEKKVTSIPLPLNSKNESKEEKVETN--PSLSN 474
BLAST of PI0022478 vs. ExPASy TrEMBL
Match:
A0A5A7V0Q7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00020 PE=4 SV=1)
HSP 1 Score: 526.2 bits (1354), Expect = 1.2e-145
Identity = 265/341 (77.71%), Postives = 295/341 (86.51%), Query Frame = 0
Query: 1 MRPHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEIFFPASRANNIR 60
MRPHG+S+EQLNLRAFPFSLTD AKRWLYY+EPGSITTWGSLKKKFLE FFPASRANNIR
Sbjct: 1 MRPHGISKEQLNLRAFPFSLTDVAKRWLYYVEPGSITTWGSLKKKFLEKFFPASRANNIR 60
Query: 61 KEIYGIRQAFGESLSEYWERFKELYASFPHHHISDPSLIQYLYSGLLTMDRNTVDAAAGG 120
KEIYGIRQAFGESLS+YW+R KEL ASFPHHHISDPSLIQY +SGLL+ DRNT+D AGG
Sbjct: 61 KEIYGIRQAFGESLSKYWKRSKELCASFPHHHISDPSLIQYFHSGLLSFDRNTIDVVAGG 120
Query: 121 ALADKTPTEARELISRMVENSQNFGNRASELDNSLTEEVSELKSQMLNMTTLLTSFVQGG 180
ALADKTPTEARELISRMVENSQ+FGNRASELDNSLT+EVSELKSQMLNMTTLLTSFVQG
Sbjct: 121 ALADKTPTEARELISRMVENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGT 180
Query: 181 SVKVAKCGVCDVVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNPNLRWGNDNQRPS 240
KV KCGVC +VGHPNDKC +IE+ ++R YDPHSNTYN+GWRDNPNLRWGNDNQ+ +
Sbjct: 181 PPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHT 240
Query: 241 QAAYSSSSSNQRTNLEDLVKALATNTFSFQQEMKQQISHLTSAIRKLERKGKLPVQPDYV 300
QA S+SSNQ TNLED++KAL TNT SFQQEMKQQ++ LT+AI K++ KGKLP QPDY
Sbjct: 241 QA--PSTSSNQGTNLEDIIKALGTNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQPDYA 300
Query: 301 NVSVISLRSGKILETAPSEEKVTSNPILLNNNDEKKEEKLE 342
NVS ISLRSGKIL+T ++EK P K+EE LE
Sbjct: 301 NVSAISLRSGKILDTPTTKEKKKETP--------KEEELLE 331
BLAST of PI0022478 vs. ExPASy TrEMBL
Match:
A0A5A7ULC7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold29G00020 PE=4 SV=1)
HSP 1 Score: 447.6 bits (1150), Expect = 5.3e-122
Identity = 226/288 (78.47%), Postives = 251/288 (87.15%), Query Frame = 0
Query: 25 KRWLYYLEPGSITTWGSLKKKFLEIFFPASRANNIRKEIYGIRQAFGESLSEYWERFKEL 84
KRWLYYLEPGSITTWGSLKKKFLE FFPAS+ANNIRKEIYGIRQAFGESLS YWERFKEL
Sbjct: 50 KRWLYYLEPGSITTWGSLKKKFLEKFFPASKANNIRKEIYGIRQAFGESLSRYWERFKEL 109
Query: 85 YASFPHHHISDPSLIQYLYSGLLTMDRNTVDAAAGGALADKTPTEARELISRMVENSQNF 144
ASFP HIS+PSLIQY YSGLL+ D+NTVDAAAGGALADKTP EA+ELISRM ENSQ+F
Sbjct: 110 CASFPFLHISNPSLIQYFYSGLLSSDKNTVDAAAGGALADKTPIEAQELISRMAENSQSF 169
Query: 145 GNRASELDNSLTEEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCDVVGHPNDKCPDLI 204
GNRASEL NSLT+EVSE+KSQMLNMTTLLTSFVQG +KV KCGV VGHPNDKCP++I
Sbjct: 170 GNRASELVNSLTKEVSEIKSQMLNMTTLLTSFVQGTPIKVTKCGVFGFVGHPNDKCPEVI 229
Query: 205 EEAKVIRNYDPHSNTYNAGWRDNPNLRWGNDNQRPSQAAYSSSSSNQRTNLEDLVKALAT 264
E+ +++ YDPH NTYN+GWRDNPNLRWGNDNQ +QA +SSNQ TNLE ++KALAT
Sbjct: 230 EDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQTHTQA--PPTSSNQGTNLEVIIKALAT 289
Query: 265 NTFSFQQEMKQQISHLTSAIRKLERKGKLPVQPDYVNVSVISLRSGKI 313
NTFSFQQEMKQQI+ LT+AI K++ KGKL QPD+ NVS ISLRS I
Sbjct: 290 NTFSFQQEMKQQITQLTTAISKMDGKGKLLAQPDHANVSAISLRSDAI 335
BLAST of PI0022478 vs. ExPASy TrEMBL
Match:
A0A5D3CRR8 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00610 PE=4 SV=1)
HSP 1 Score: 446.4 bits (1147), Expect = 1.2e-121
Identity = 231/311 (74.28%), Postives = 263/311 (84.57%), Query Frame = 0
Query: 40 GSLKKKFLEIFFPASRANNIRKEIYGIRQAFGESLSEYWERFKELYASFPHHHISDPSLI 99
GSLKK+FL+ FFPASRANNIRKEIY IRQ FGESLSEY ERFKEL ASFPHHHISDPSLI
Sbjct: 13 GSLKKQFLKKFFPASRANNIRKEIYEIRQTFGESLSEYRERFKELCASFPHHHISDPSLI 72
Query: 100 QYLYSGLLTMDRNTVDAAAGGALADKTPTEARELISRMVENSQNFGNRASELDNSLTEEV 159
QY Y LL+ DRNTVDA AGGALADK PTEARELIS+M ENSQ+F NRASELDNSLT+EV
Sbjct: 73 QYSYFDLLSSDRNTVDAVAGGALADKAPTEARELISKMAENSQSFENRASELDNSLTKEV 132
Query: 160 SELKSQMLNMTTLLTSFVQGGSVKVAKCGVCDVVGHPNDKCPDLIEEAKVIRNYDPHSNT 219
SELKSQMLNMTTLLTSFVQG +KV KCGVC +VGHPNDKCP++IE+ ++R YDPH NT
Sbjct: 133 SELKSQMLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNT 192
Query: 220 YNAGWRDNPNLRWGNDNQRPSQAAYSSSSSNQRTNLEDLVKALATNTFSFQQEMKQQISH 279
YN+GWRDNPNLRWGNDNQ+ +QA S+SSNQ TNLED++KALATNT SFQQEMKQQ++
Sbjct: 193 YNSGWRDNPNLRWGNDNQKHTQA--PSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQ 252
Query: 280 LTSAIRKLERKGKLPVQPDYVNVSVISLRSGKILET-APSEEKVTSNPILLNNNDEKKEE 339
LT+AI K++ KGKL Q +Y NVS +SLRSGKIL+T E+K TS P+ LN +E KEE
Sbjct: 253 LTTAISKMDGKGKLSAQSNYANVSAVSLRSGKILDTPTTKEKKATSKPLPLNTKNECKEE 312
Query: 340 KLETNALPSSS 350
K+ETN P +S
Sbjct: 313 KIETNPSPYNS 321
BLAST of PI0022478 vs. ExPASy TrEMBL
Match:
A0A5D3CFE7 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold315G00840 PE=4 SV=1)
HSP 1 Score: 438.3 bits (1126), Expect = 3.2e-119
Identity = 221/290 (76.21%), Postives = 247/290 (85.17%), Query Frame = 0
Query: 32 EPGSITTWGSLKKKFLEIFFPASRANNIRKEIYGIRQAFGESLSEYWERFKELYASFPHH 91
+P SITTWGSLKKKFLE FF ASRANNIRKEIYGIRQAF ESLSEYWERFKEL ASFPHH
Sbjct: 49 KPSSITTWGSLKKKFLEKFFLASRANNIRKEIYGIRQAFEESLSEYWERFKELCASFPHH 108
Query: 92 HISDPSLIQYLYSGLLTMDRNTVDAAAGGALADKTPTEARELISRMVENSQNFGNRASEL 151
HI DPSL QY YSGLL+ DRNTVDA AG ALADKTPTEA ELISRM EN Q+FGNRAS+L
Sbjct: 109 HIFDPSLFQYFYSGLLSSDRNTVDAVAGRALADKTPTEAWELISRMAENFQSFGNRASKL 168
Query: 152 DNSLTEEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCDVVGHPNDKCPDLIEEAKVIR 211
+N LT+EVSELKS+MLNMTTLLTSFVQG KV KCGVC +VGHPNDKCP++IE+ ++R
Sbjct: 169 ENYLTKEVSELKSKMLNMTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVR 228
Query: 212 NYDPHSNTYNAGWRDNPNLRWGNDNQRPSQAAYSSSSSNQRTNLEDLVKALATNTFSFQQ 271
YDPH NTYN GWRD PNLRWGND Q +QA S+SSNQ TNLED++KAL TNT SFQQ
Sbjct: 229 RYDPHGNTYNLGWRDKPNLRWGNDKQNHTQA--PSTSSNQGTNLEDIIKALTTNTLSFQQ 288
Query: 272 EMKQQISHLTSAIRKLERKGKLPVQPDYVNVSVISLRSGKILETAPSEEK 322
EMKQQ++ LT+AI K++ KGKLP QPD+ NVS ISLRSGKIL+T ++EK
Sbjct: 289 EMKQQMTQLTTAISKMDGKGKLPAQPDHANVSAISLRSGKILDTPTTKEK 336
BLAST of PI0022478 vs. NCBI nr
Match:
KAA0061138.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 526.2 bits (1354), Expect = 2.4e-145
Identity = 265/341 (77.71%), Postives = 295/341 (86.51%), Query Frame = 0
Query: 1 MRPHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEIFFPASRANNIR 60
MRPHG+S+EQLNLRAFPFSLTD AKRWLYY+EPGSITTWGSLKKKFLE FFPASRANNIR
Sbjct: 1 MRPHGISKEQLNLRAFPFSLTDVAKRWLYYVEPGSITTWGSLKKKFLEKFFPASRANNIR 60
Query: 61 KEIYGIRQAFGESLSEYWERFKELYASFPHHHISDPSLIQYLYSGLLTMDRNTVDAAAGG 120
KEIYGIRQAFGESLS+YW+R KEL ASFPHHHISDPSLIQY +SGLL+ DRNT+D AGG
Sbjct: 61 KEIYGIRQAFGESLSKYWKRSKELCASFPHHHISDPSLIQYFHSGLLSFDRNTIDVVAGG 120
Query: 121 ALADKTPTEARELISRMVENSQNFGNRASELDNSLTEEVSELKSQMLNMTTLLTSFVQGG 180
ALADKTPTEARELISRMVENSQ+FGNRASELDNSLT+EVSELKSQMLNMTTLLTSFVQG
Sbjct: 121 ALADKTPTEARELISRMVENSQSFGNRASELDNSLTKEVSELKSQMLNMTTLLTSFVQGT 180
Query: 181 SVKVAKCGVCDVVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNPNLRWGNDNQRPS 240
KV KCGVC +VGHPNDKC +IE+ ++R YDPHSNTYN+GWRDNPNLRWGNDNQ+ +
Sbjct: 181 PPKVTKCGVCGLVGHPNDKCLKVIEDVNIVRRYDPHSNTYNSGWRDNPNLRWGNDNQKHT 240
Query: 241 QAAYSSSSSNQRTNLEDLVKALATNTFSFQQEMKQQISHLTSAIRKLERKGKLPVQPDYV 300
QA S+SSNQ TNLED++KAL TNT SFQQEMKQQ++ LT+AI K++ KGKLP QPDY
Sbjct: 241 QA--PSTSSNQGTNLEDIIKALGTNTLSFQQEMKQQMTQLTTAISKMDGKGKLPAQPDYA 300
Query: 301 NVSVISLRSGKILETAPSEEKVTSNPILLNNNDEKKEEKLE 342
NVS ISLRSGKIL+T ++EK P K+EE LE
Sbjct: 301 NVSAISLRSGKILDTPTTKEKKKETP--------KEEELLE 331
BLAST of PI0022478 vs. NCBI nr
Match:
KAA0031967.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 526.2 bits (1354), Expect = 2.4e-145
Identity = 268/351 (76.35%), Postives = 306/351 (87.18%), Query Frame = 0
Query: 1 MRPHGVSEEQLNLRAFPFSLTDTAKRWLYYLEPGSITTWGSLKKKFLEIFFPASRANNIR 60
MRPHG+SEEQLNLRAFPFSLTD AKRWLYYLEPGSITTWGSLKKKFLE FFPASR NNIR
Sbjct: 128 MRPHGISEEQLNLRAFPFSLTDVAKRWLYYLEPGSITTWGSLKKKFLEKFFPASRTNNIR 187
Query: 61 KEIYGIRQAFGESLSEYWERFKELYASFPHHHISDPSLIQYLYSGLLTMDRNTVDAAAGG 120
KEIYGIRQAFGESL +YWE+FKEL A+FPHHHI PSLIQY Y GLL+ DRNTVDAAAGG
Sbjct: 188 KEIYGIRQAFGESLLKYWEKFKELCANFPHHHIFYPSLIQYFYFGLLSSDRNTVDAAAGG 247
Query: 121 ALADKTPTEARELISRMVENSQNFGNRASELDNSLTEEVSELKSQMLNMTTLLTSFVQGG 180
ALA+K PTEARELISRM +NSQ FGNRASEL+NSLT+EVSELKSQMLNMTTLLTSFVQG
Sbjct: 248 ALANKIPTEARELISRMAKNSQRFGNRASELENSLTKEVSELKSQMLNMTTLLTSFVQGT 307
Query: 181 SVKVAKCGVCDVVGHPNDKCPDLIEEAKVIRNYDPHSNTYNAGWRDNPNLRWGNDNQRPS 240
+KV KC VC +VGHPNDKCP++IEE +++ YDP+SNTYN GWRDNP LRWGNDNQ+ +
Sbjct: 308 PLKVTKCRVCGLVGHPNDKCPEVIEELNIVKKYDPYSNTYNTGWRDNPILRWGNDNQKHT 367
Query: 241 QAAYSSSSSNQRTNLEDLVKALATNTFSFQQEMKQQISHLTSAIRKLERKGKLPVQPDYV 300
QA ++SSNQ TNL+D++KALATNT SFQQEMKQQ++ LT+ I K++ KGKLP QP++
Sbjct: 368 QA--PTTSSNQSTNLKDIIKALATNTLSFQQEMKQQMTQLTTTISKMDGKGKLPAQPNHA 427
Query: 301 NVSVISLRSGKILET-APSEEKVTSNPILLNNNDEKKEEKLETNALPSSSN 351
NVSVISLRSGKIL+T + E+KVTS P+ LN+ +E KEEK+ETN PS SN
Sbjct: 428 NVSVISLRSGKILDTPSTKEKKVTSIPLPLNSKNESKEEKVETN--PSLSN 474
BLAST of PI0022478 vs. NCBI nr
Match:
KAA0056713.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 447.6 bits (1150), Expect = 1.1e-121
Identity = 226/288 (78.47%), Postives = 251/288 (87.15%), Query Frame = 0
Query: 25 KRWLYYLEPGSITTWGSLKKKFLEIFFPASRANNIRKEIYGIRQAFGESLSEYWERFKEL 84
KRWLYYLEPGSITTWGSLKKKFLE FFPAS+ANNIRKEIYGIRQAFGESLS YWERFKEL
Sbjct: 50 KRWLYYLEPGSITTWGSLKKKFLEKFFPASKANNIRKEIYGIRQAFGESLSRYWERFKEL 109
Query: 85 YASFPHHHISDPSLIQYLYSGLLTMDRNTVDAAAGGALADKTPTEARELISRMVENSQNF 144
ASFP HIS+PSLIQY YSGLL+ D+NTVDAAAGGALADKTP EA+ELISRM ENSQ+F
Sbjct: 110 CASFPFLHISNPSLIQYFYSGLLSSDKNTVDAAAGGALADKTPIEAQELISRMAENSQSF 169
Query: 145 GNRASELDNSLTEEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCDVVGHPNDKCPDLI 204
GNRASEL NSLT+EVSE+KSQMLNMTTLLTSFVQG +KV KCGV VGHPNDKCP++I
Sbjct: 170 GNRASELVNSLTKEVSEIKSQMLNMTTLLTSFVQGTPIKVTKCGVFGFVGHPNDKCPEVI 229
Query: 205 EEAKVIRNYDPHSNTYNAGWRDNPNLRWGNDNQRPSQAAYSSSSSNQRTNLEDLVKALAT 264
E+ +++ YDPH NTYN+GWRDNPNLRWGNDNQ +QA +SSNQ TNLE ++KALAT
Sbjct: 230 EDVNIVQKYDPHGNTYNSGWRDNPNLRWGNDNQTHTQA--PPTSSNQGTNLEVIIKALAT 289
Query: 265 NTFSFQQEMKQQISHLTSAIRKLERKGKLPVQPDYVNVSVISLRSGKI 313
NTFSFQQEMKQQI+ LT+AI K++ KGKL QPD+ NVS ISLRS I
Sbjct: 290 NTFSFQQEMKQQITQLTTAISKMDGKGKLLAQPDHANVSAISLRSDAI 335
BLAST of PI0022478 vs. NCBI nr
Match:
KAA0047407.1 (retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 446.4 bits (1147), Expect = 2.5e-121
Identity = 231/311 (74.28%), Postives = 263/311 (84.57%), Query Frame = 0
Query: 40 GSLKKKFLEIFFPASRANNIRKEIYGIRQAFGESLSEYWERFKELYASFPHHHISDPSLI 99
GSLKK+FL+ FFPASRANNIRKEIY IRQ FGESLSEY ERFKEL ASFPHHHISDPSLI
Sbjct: 13 GSLKKQFLKKFFPASRANNIRKEIYEIRQTFGESLSEYRERFKELCASFPHHHISDPSLI 72
Query: 100 QYLYSGLLTMDRNTVDAAAGGALADKTPTEARELISRMVENSQNFGNRASELDNSLTEEV 159
QY Y LL+ DRNTVDA AGGALADK PTEARELIS+M ENSQ+F NRASELDNSLT+EV
Sbjct: 73 QYSYFDLLSSDRNTVDAVAGGALADKAPTEARELISKMAENSQSFENRASELDNSLTKEV 132
Query: 160 SELKSQMLNMTTLLTSFVQGGSVKVAKCGVCDVVGHPNDKCPDLIEEAKVIRNYDPHSNT 219
SELKSQMLNMTTLLTSFVQG +KV KCGVC +VGHPNDKCP++IE+ ++R YDPH NT
Sbjct: 133 SELKSQMLNMTTLLTSFVQGTPLKVTKCGVCGLVGHPNDKCPEVIEDVNIVRKYDPHGNT 192
Query: 220 YNAGWRDNPNLRWGNDNQRPSQAAYSSSSSNQRTNLEDLVKALATNTFSFQQEMKQQISH 279
YN+GWRDNPNLRWGNDNQ+ +QA S+SSNQ TNLED++KALATNT SFQQEMKQQ++
Sbjct: 193 YNSGWRDNPNLRWGNDNQKHTQA--PSTSSNQGTNLEDIIKALATNTLSFQQEMKQQMTQ 252
Query: 280 LTSAIRKLERKGKLPVQPDYVNVSVISLRSGKILET-APSEEKVTSNPILLNNNDEKKEE 339
LT+AI K++ KGKL Q +Y NVS +SLRSGKIL+T E+K TS P+ LN +E KEE
Sbjct: 253 LTTAISKMDGKGKLSAQSNYANVSAVSLRSGKILDTPTTKEKKATSKPLPLNTKNECKEE 312
Query: 340 KLETNALPSSS 350
K+ETN P +S
Sbjct: 313 KIETNPSPYNS 321
BLAST of PI0022478 vs. NCBI nr
Match:
TYK10613.1 (retrotransposon gag protein [Cucumis melo var. makuwa])
HSP 1 Score: 438.3 bits (1126), Expect = 6.7e-119
Identity = 221/290 (76.21%), Postives = 247/290 (85.17%), Query Frame = 0
Query: 32 EPGSITTWGSLKKKFLEIFFPASRANNIRKEIYGIRQAFGESLSEYWERFKELYASFPHH 91
+P SITTWGSLKKKFLE FF ASRANNIRKEIYGIRQAF ESLSEYWERFKEL ASFPHH
Sbjct: 49 KPSSITTWGSLKKKFLEKFFLASRANNIRKEIYGIRQAFEESLSEYWERFKELCASFPHH 108
Query: 92 HISDPSLIQYLYSGLLTMDRNTVDAAAGGALADKTPTEARELISRMVENSQNFGNRASEL 151
HI DPSL QY YSGLL+ DRNTVDA AG ALADKTPTEA ELISRM EN Q+FGNRAS+L
Sbjct: 109 HIFDPSLFQYFYSGLLSSDRNTVDAVAGRALADKTPTEAWELISRMAENFQSFGNRASKL 168
Query: 152 DNSLTEEVSELKSQMLNMTTLLTSFVQGGSVKVAKCGVCDVVGHPNDKCPDLIEEAKVIR 211
+N LT+EVSELKS+MLNMTTLLTSFVQG KV KCGVC +VGHPNDKCP++IE+ ++R
Sbjct: 169 ENYLTKEVSELKSKMLNMTTLLTSFVQGTPFKVTKCGVCGLVGHPNDKCPEVIEDINIVR 228
Query: 212 NYDPHSNTYNAGWRDNPNLRWGNDNQRPSQAAYSSSSSNQRTNLEDLVKALATNTFSFQQ 271
YDPH NTYN GWRD PNLRWGND Q +QA S+SSNQ TNLED++KAL TNT SFQQ
Sbjct: 229 RYDPHGNTYNLGWRDKPNLRWGNDKQNHTQA--PSTSSNQGTNLEDIIKALTTNTLSFQQ 288
Query: 272 EMKQQISHLTSAIRKLERKGKLPVQPDYVNVSVISLRSGKILETAPSEEK 322
EMKQQ++ LT+AI K++ KGKLP QPD+ NVS ISLRSGKIL+T ++EK
Sbjct: 289 EMKQQMTQLTTAISKMDGKGKLPAQPDHANVSAISLRSGKILDTPTTKEK 336
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7SRF5 | 1.2e-145 | 76.35 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A5A7V0Q7 | 1.2e-145 | 77.71 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| A0A5A7ULC7 | 5.3e-122 | 78.47 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... | [more] |
| A0A5D3CRR8 | 1.2e-121 | 74.28 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| A0A5D3CFE7 | 3.2e-119 | 76.21 | Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KAA0061138.1 | 2.4e-145 | 77.71 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| KAA0031967.1 | 2.4e-145 | 76.35 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK16787.1 retrotranspos... | [more] |
| KAA0056713.1 | 1.1e-121 | 78.47 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| KAA0047407.1 | 2.5e-121 | 74.28 | retrotransposon gag protein [Cucumis melo var. makuwa] >TYK14082.1 retrotranspos... | [more] |
| TYK10613.1 | 6.7e-119 | 76.21 | retrotransposon gag protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
