PI0022344 (gene) Melon (PI 482460) v1

Overview
NamePI0022344
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotran_gag_3 domain-containing protein
Locationchr02: 16777712 .. 16778065 (+)
RNA-Seq ExpressionPI0022344
SyntenyPI0022344
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATGAAAATGGTGAAGATACTGTTTCACAGCTTCAAATCACCACTTCTTACTCAAAAGCTGTCAATGTCAATCAAACTCCAAATACTTCCTTTGGTAATCCCCTAAACAGTATTTTAATAGTGAAATTTGATGAAAGAAACTATTCTCTATGGCGCAGCATGGTTCTAACCGTTCTGAAAGGTAAAAAGGTTGATGGTTTTGTTCTTGAAACCAAACCAAAACCTGCTGAATATGTTACAACAACAAAGGAGAAAATTCAAAAAACACAGAATTACTTAGCAACTCGGAATTTGAAGAATGGAACACTGTTGACCAAGCTTTACTTGGTTGGTTGTCGGGCTCAATGA

mRNA sequence

ATGGAGAATGAAAATGGTGAAGATACTGTTTCACAGCTTCAAATCACCACTTCTTACTCAAAAGCTGTCAATGTCAATCAAACTCCAAATACTTCCTTTGGTAATCCCCTAAACAGTATTTTAATAGTGAAATTTGATGAAAGAAACTATTCTCTATGGCGCAGCATGGTTCTAACCGTTCTGAAAGGTAAAAAGGTTGATGGTTTTGTTCTTGAAACCAAACCAAAACCTGCTGAATATGTTACAACAACAAAGGAGAAAATTCAAAAAACACAGAATTACTTAGCAACTCGGAATTTGAAGAATGGAACACTGTTGACCAAGCTTTACTTGGTTGGTTGTCGGGCTCAATGA

Coding sequence (CDS)

ATGGAGAATGAAAATGGTGAAGATACTGTTTCACAGCTTCAAATCACCACTTCTTACTCAAAAGCTGTCAATGTCAATCAAACTCCAAATACTTCCTTTGGTAATCCCCTAAACAGTATTTTAATAGTGAAATTTGATGAAAGAAACTATTCTCTATGGCGCAGCATGGTTCTAACCGTTCTGAAAGGTAAAAAGGTTGATGGTTTTGTTCTTGAAACCAAACCAAAACCTGCTGAATATGTTACAACAACAAAGGAGAAAATTCAAAAAACACAGAATTACTTAGCAACTCGGAATTTGAAGAATGGAACACTGTTGACCAAGCTTTACTTGGTTGGTTGTCGGGCTCAATGA

Protein sequence

MENENGEDTVSQLQITTSYSKAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTTTKEKIQKTQNYLATRNLKNGTLLTKLYLVGCRAQ
Homology
BLAST of PI0022344 vs. ExPASy TrEMBL
Match: A0A6J1CPQ7 (ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LOC111013443 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 3.4e-11
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 0

Query: 16 TTSYSKAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKP 75
          TT+ S+   V    N SFG+PL++ L VK D++NY+LW+ MVL VL G+KVDG+VL TK 
Sbjct: 10 TTNNSQQATVFSAINISFGHPLSTALTVKLDDKNYTLWKGMVLAVLPGQKVDGYVLRTKT 69

Query: 76 KPAEYVTTTKE 87
           P++Y TTT +
Sbjct: 70 CPSKYTTTTSD 80

BLAST of PI0022344 vs. ExPASy TrEMBL
Match: A0A6J1DU77 (uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.1e-09
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 0

Query: 1   MENENGEDTVSQLQITTSYS-KAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLT 60
           M  E  E++    Q+ T+ +    N +   NTSFG+PL ++L VK D++NYSLWR MVL 
Sbjct: 1   MTTEETENSSVPPQVVTNVAVPTPNPSPQFNTSFGHPLGTVLTVKLDDKNYSLWRGMVLA 60

Query: 61  VLKGKKVDGFVLETKPKPAEYVTT-----TKEKIQKTQNYL 96
           VL+G+K DG+VL T  KP +++ +     T + +Q    Y+
Sbjct: 61  VLRGQKFDGYVLGTLAKPPQFLVSPETEGTSDHLQVNPEYV 101

BLAST of PI0022344 vs. ExPASy TrEMBL
Match: A0A6J1DTZ7 (uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024384 PE=4 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 4.1e-09
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 0

Query: 1   MENENGEDTVSQLQITTSYS-KAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLT 60
           M  E  E++    Q+ T+ +    N +   NTSFG+PL ++L VK D++NYSLWR MVL 
Sbjct: 1   MTTEETENSSVPPQVVTNVAVPTPNPSPQFNTSFGHPLGTVLTVKLDDKNYSLWRGMVLA 60

Query: 61  VLKGKKVDGFVLETKPKPAEYVTT-----TKEKIQKTQNYL 96
           VL+G+K DG+VL T  KP +++ +     T + +Q    Y+
Sbjct: 61  VLRGQKFDGYVLGTLAKPPQFLVSPETEGTSDHLQVNPEYV 101

BLAST of PI0022344 vs. ExPASy TrEMBL
Match: A0A0A0LXU0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G477520 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.0e-08
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 0

Query: 30  NTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTTTKEKIQ 89
           NTSFG+PL++ L +K D++ + LWR MVL VL+G+KVDG+VL  K +P + + +  E   
Sbjct: 30  NTSFGHPLDTSLSIKLDDKKFGLWRGMVLAVLRGQKVDGYVLGAKSQPPQSLKSNDEASS 89

Query: 90  KTQNYLATRNLKNGTLLTKLYLVGCRAQ 118
            T   +  + LKN     KL+L G   Q
Sbjct: 90  STS--VLIQPLKNRQQQIKLFLDGYMVQ 115

BLAST of PI0022344 vs. ExPASy TrEMBL
Match: A0A5A7TWE0 (Retrotransposon polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001810 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 7.7e-08
Identity = 30/52 (57.69%), Postives = 43/52 (82.69%), Query Frame = 0

Query: 30 NTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYV 82
          +T+FG+ L+S+LIVK DE NYSLW +MV++VL  +K+DGFVL TK KP++ +
Sbjct: 25 STTFGHLLSSVLIVKLDEINYSLWHNMVMSVLNSQKIDGFVLGTKLKPSKVI 76

BLAST of PI0022344 vs. NCBI nr
Match: XP_022143579.1 (ankyrin repeat-containing protein NPR4-like [Momordica charantia])

HSP 1 Score: 77.8 bits (190), Expect = 6.9e-11
Identity = 37/71 (52.11%), Postives = 51/71 (71.83%), Query Frame = 0

Query: 16 TTSYSKAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKP 75
          TT+ S+   V    N SFG+PL++ L VK D++NY+LW+ MVL VL G+KVDG+VL TK 
Sbjct: 10 TTNNSQQATVFSAINISFGHPLSTALTVKLDDKNYTLWKGMVLAVLPGQKVDGYVLRTKT 69

Query: 76 KPAEYVTTTKE 87
           P++Y TTT +
Sbjct: 70 CPSKYTTTTSD 80

BLAST of PI0022344 vs. NCBI nr
Match: XP_022157748.1 (uncharacterized protein LOC111024384 isoform X1 [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 8.5e-09
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 0

Query: 1   MENENGEDTVSQLQITTSYS-KAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLT 60
           M  E  E++    Q+ T+ +    N +   NTSFG+PL ++L VK D++NYSLWR MVL 
Sbjct: 1   MTTEETENSSVPPQVVTNVAVPTPNPSPQFNTSFGHPLGTVLTVKLDDKNYSLWRGMVLA 60

Query: 61  VLKGKKVDGFVLETKPKPAEYVTT-----TKEKIQKTQNYL 96
           VL+G+K DG+VL T  KP +++ +     T + +Q    Y+
Sbjct: 61  VLRGQKFDGYVLGTLAKPPQFLVSPETEGTSDHLQVNPEYV 101

BLAST of PI0022344 vs. NCBI nr
Match: XP_022157750.1 (uncharacterized protein LOC111024384 isoform X2 [Momordica charantia])

HSP 1 Score: 70.9 bits (172), Expect = 8.5e-09
Identity = 40/101 (39.60%), Postives = 61/101 (60.40%), Query Frame = 0

Query: 1   MENENGEDTVSQLQITTSYS-KAVNVNQTPNTSFGNPLNSILIVKFDERNYSLWRSMVLT 60
           M  E  E++    Q+ T+ +    N +   NTSFG+PL ++L VK D++NYSLWR MVL 
Sbjct: 1   MTTEETENSSVPPQVVTNVAVPTPNPSPQFNTSFGHPLGTVLTVKLDDKNYSLWRGMVLA 60

Query: 61  VLKGKKVDGFVLETKPKPAEYVTT-----TKEKIQKTQNYL 96
           VL+G+K DG+VL T  KP +++ +     T + +Q    Y+
Sbjct: 61  VLRGQKFDGYVLGTLAKPPQFLVSPETEGTSDHLQVNPEYV 101

BLAST of PI0022344 vs. NCBI nr
Match: KGN65642.1 (hypothetical protein Csa_019906 [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 4.2e-08
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 0

Query: 30  NTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYVTTTKEKIQ 89
           NTSFG+PL++ L +K D++ + LWR MVL VL+G+KVDG+VL  K +P + + +  E   
Sbjct: 30  NTSFGHPLDTSLSIKLDDKKFGLWRGMVLAVLRGQKVDGYVLGAKSQPPQSLKSNDEASS 89

Query: 90  KTQNYLATRNLKNGTLLTKLYLVGCRAQ 118
            T   +  + LKN     KL+L G   Q
Sbjct: 90  STS--VLIQPLKNRQQQIKLFLDGYMVQ 115

BLAST of PI0022344 vs. NCBI nr
Match: KAA0047903.1 (retrotransposon polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-07
Identity = 30/52 (57.69%), Postives = 43/52 (82.69%), Query Frame = 0

Query: 30 NTSFGNPLNSILIVKFDERNYSLWRSMVLTVLKGKKVDGFVLETKPKPAEYV 82
          +T+FG+ L+S+LIVK DE NYSLW +MV++VL  +K+DGFVL TK KP++ +
Sbjct: 25 STTFGHLLSSVLIVKLDEINYSLWHNMVMSVLNSQKIDGFVLGTKLKPSKVI 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1CPQ73.4e-1152.11ankyrin repeat-containing protein NPR4-like OS=Momordica charantia OX=3673 GN=LO... [more]
A0A6J1DU774.1e-0939.60uncharacterized protein LOC111024384 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A6J1DTZ74.1e-0939.60uncharacterized protein LOC111024384 isoform X2 OS=Momordica charantia OX=3673 G... [more]
A0A0A0LXU02.0e-0842.05Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G477520 PE=4 SV=1[more]
A0A5A7TWE07.7e-0857.69Retrotransposon polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
Match NameE-valueIdentityDescription
XP_022143579.16.9e-1152.11ankyrin repeat-containing protein NPR4-like [Momordica charantia][more]
XP_022157748.18.5e-0939.60uncharacterized protein LOC111024384 isoform X1 [Momordica charantia][more]
XP_022157750.18.5e-0939.60uncharacterized protein LOC111024384 isoform X2 [Momordica charantia][more]
KGN65642.14.2e-0842.05hypothetical protein Csa_019906 [Cucumis sativus][more]
KAA0047903.11.6e-0757.69retrotransposon polyprotein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029472Retrotransposon Copia-like, N-terminalPFAMPF14244Retrotran_gag_3coord: 40..77
e-value: 1.8E-6
score: 27.6

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0022344.1PI0022344.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane