PI0022161 (gene) Melon (PI 482460) v1

Overview


Name	PI0022161
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Voltage-dependent T-type calcium channel subunit alpha-1I (Ca(V)3.3) like
Location	chr11: 5872770 .. 5873566 (-)
RNA-Seq Expression	PI0022161
Synteny	PI0022161

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAATTGTGAGACCCACCAAACAAATGCCCATAGCACACAGTAATGAGAATCCCTCTTTTCAAATCCTCATCCCTATCCAATTCTCAATCATTACACCATTTTTCTTCGTTTCCCCAAAACCCTAATCCACGATTCTTCTTCACCCCTTCTTTTCTATCTTTCTTATTAAATCTCTTTTCCACTTTCAAACTTTCCTTACCGGAGCAAAGAAAAATGGAGGCGGAGACTGCGGTGGCGGCGATTCTCGGAAGATTGGGGCGTCATTGCTATGCGGTTTTGTGTTTGGGAGTTCTTCTTCTGACGGTGGCCGTAGTTCACTACGTTGGGGACGGAGAGCCTAGCGATCCACGCGAGCGGAGCAAGCGCCGTCTTCGGGCCTTGCACGGCTCATCAATTCGCGGCGGAGATGGCGGGCGTCAGTTGCGTTCGGTGGTGAATTGAAGCGCTTTTTAAGGGAATGTTTATGCAATAATTACTAATTTTGTTATGTTTTTGTAAAAGGGTAATAAATAGTTTAATTAGTACTGATTCCTCATGGGGTAACAAAATGTAAATTATTTGGTTCTTTTTGTGTAAATTCCAATGTGAGATTTTTGTGAAATAAATTATCATTATCATTATGAGCTATAATTAGGGATAAATAGTGCAATGGCTTAGACCCACCCGACCCTAATTAGCCCGGTTCTGTAATAAAGAGAATAGTTTATGTATGACCAAACGGAAACAGTGGAAACAGTGCACTCATCTTTAATGCAATTGAAGAGGTTGTAGAAAGATGGGTGGAGTATGAATTATCC

mRNA sequence

CAATTGTGAGACCCACCAAACAAATGCCCATAGCACACAGTAATGAGAATCCCTCTTTTCAAATCCTCATCCCTATCCAATTCTCAATCATTACACCATTTTTCTTCGTTTCCCCAAAACCCTAATCCACGATTCTTCTTCACCCCTTCTTTTCTATCTTTCTTATTAAATCTCTTTTCCACTTTCAAACTTTCCTTACCGGAGCAAAGAAAAATGGAGGCGGAGACTGCGGTGGCGGCGATTCTCGGAAGATTGGGGCGTCATTGCTATGCGGTTTTGTGTTTGGGAGTTCTTCTTCTGACGGTGGCCGTAGTTCACTACGTTGGGGACGGAGAGCCTAGCGATCCACGCGAGCGGAGCAAGCGCCGTCTTCGGGCCTTGCACGGCTCATCAATTCGCGGCGGAGATGGCGGGCGTCAGTTGCGTTCGGTGGTGAATTGAAGCGCTTTTTAAGGGAATGTTTATGCAATAATTACTAATTTTGTTATGTTTTTGTAAAAGGGTAATAAATAGTTTAATTAGTACTGATTCCTCATGGGGTAACAAAATGTAAATTATTTGGTTCTTTTTGTGTAAATTCCAATGTGAGATTTTTGTGAAATAAATTATCATTATCATTATGAGCTATAATTAGGGATAAATAGTGCAATGGCTTAGACCCACCCGACCCTAATTAGCCCGGTTCTGTAATAAAGAGAATAGTTTATGTATGACCAAACGGAAACAGTGGAAACAGTGCACTCATCTTTAATGCAATTGAAGAGGTTGTAGAAAGATGGGTGGAGTATGAATTATCC

Coding sequence (CDS)

ATGAGAATCCCTCTTTTCAAATCCTCATCCCTATCCAATTCTCAATCATTACACCATTTTTCTTCGTTTCCCCAAAACCCTAATCCACGATTCTTCTTCACCCCTTCTTTTCTATCTTTCTTATTAAATCTCTTTTCCACTTTCAAACTTTCCTTACCGGAGCAAAGAAAAATGGAGGCGGAGACTGCGGTGGCGGCGATTCTCGGAAGATTGGGGCGTCATTGCTATGCGGTTTTGTGTTTGGGAGTTCTTCTTCTGACGGTGGCCGTAGTTCACTACGTTGGGGACGGAGAGCCTAGCGATCCACGCGAGCGGAGCAAGCGCCGTCTTCGGGCCTTGCACGGCTCATCAATTCGCGGCGGAGATGGCGGGCGTCAGTTGCGTTCGGTGGTGAATTGA

Protein sequence

MRIPLFKSSSLSNSQSLHHFSSFPQNPNPRFFFTPSFLSFLLNLFSTFKLSLPEQRKMEAETAVAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPSDPRERSKRRLRALHGSSIRGGDGGRQLRSVVN

Homology

[Close]

BLAST of PI0022161 vs. ExPASy TrEMBL
Match: A0A0A0KC65 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G293180 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 6.4e-27
Identity = 65/75 (86.67%), Postives = 69/75 (92.00%), Query Frame = 0


Query: 58  MEAETAVAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPSDPRERSKRRLRALHGSS 117
           MEAETA+AAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEP+DPRER+KRRLR LHGSS
Sbjct: 1   MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHGSS 60

Query: 118 IRGGDGGRQLRSVVN 133
           I G D  RQL +VVN
Sbjct: 61  ILGEDAARQLPAVVN 75

[Close]

BLAST of PI0022161 vs. ExPASy TrEMBL
Match: A0A660KR43 (MLO-like protein OS=Carpinus fangiana OX=176857 GN=MLO PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 2.6e-12
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 21  SSFPQN-----PNPRFFFTPSFLSFLLNLFSTFKLSLPEQRKMEAETAVAAILGRLGRHC 80
           +SFP+      P+   F  P + S +  ++S FK     +R+ E E +   +LG+LGR C
Sbjct: 522 TSFPRPPISFLPSAPCFPPPQYHSSIFTIYSNFKHHKAREREREMEIS-GGLLGKLGRQC 581

Query: 81  YAVLCLGVLLLTVAVVHYVGDGEPSDPRERSKRRLRALHGSSIR 120
           YAVLCLGVLL++V + H V   EP+DPRER+ RRLR L G   R
Sbjct: 582 YAVLCLGVLLVSVTIAHCVSAAEPTDPRERAGRRLRDLRGGPFR 624

[Close]

BLAST of PI0022161 vs. ExPASy TrEMBL
Match: A0A7N2KN99 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 1.7e-11
Identity = 38/54 (70.37%), Postives = 43/54 (79.63%), Query Frame = 0


Query: 64  VAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPSDPRERSKRRLRALHGSS 118
           V  +LG+L RHCYAVLCLGVLLL+V + HYV   EPSDPRER+ RRLRA HG S
Sbjct: 4   VDGLLGKLVRHCYAVLCLGVLLLSVTIAHYVPAAEPSDPRERTIRRLRASHGRS 57

[Close]

BLAST of PI0022161 vs. ExPASy TrEMBL
Match: A0A5E4FUM3 (Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B035406 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.2e-10
Identity = 33/53 (62.26%), Postives = 43/53 (81.13%), Query Frame = 0


Query: 67  ILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPSDPRERSKRRLRALHGSSIR 120
           +LG+LGR CYAVLCLGV++L V +V+YVG  E  DP ER++RRLRA+HG  +R
Sbjct: 7   LLGKLGRQCYAVLCLGVIILAVTLVNYVGAEEQKDPMERTRRRLRAIHGPPLR 59

[Close]

BLAST of PI0022161 vs. ExPASy TrEMBL
Match: B9SK55 (Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1401120 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 9.3e-10
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 0


Query: 64  VAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGD--GEP-SDPRERSKRRLRALHGSSIR 120
           V  +LGRLGR CYAVLCLG++L+ V++  YVGD  GE  SDP+ER++RRLRA+HG  +R
Sbjct: 4   VQGLLGRLGRQCYAVLCLGMILVIVSIARYVGDDGGEMISDPKERTRRRLRAIHGPPLR 62

[Close]

BLAST of PI0022161 vs. NCBI nr
Match: KAE8647058.1 (hypothetical protein Csa_023003, partial [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-23
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 0


Query: 58  MEAETAVAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPSDPRERSKRRLRALHGSS 117
           MEAETA+AAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEP+DPRER+KRRLR LHGSS
Sbjct: 1   MEAETALAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERTKRRLRPLHGSS 60

Query: 118 IRGGD 123
           I G D
Sbjct: 61  ILGED 65

[Close]

BLAST of PI0022161 vs. NCBI nr
Match: KAG7010620.1 (Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-21
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 58  MEAETAVAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPSDPRERSKRRLRALHG 116
           ME ETAV AILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEP+DPRERSKRRLR LHG
Sbjct: 1   MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHG 58

[Close]

BLAST of PI0022161 vs. NCBI nr
Match: KAG6570773.1 (Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-21
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 58  MEAETAVAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPSDPRERSKRRLRALHG 116
           ME ETAV AILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEP+DPRERSKRRLR LHG
Sbjct: 1   MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHG 58

[Close]

BLAST of PI0022161 vs. NCBI nr
Match: XP_023512260.1 (syntaxin-71-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 112.5 bits (280), Expect = 2.9e-21
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 58  MEAETAVAAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPSDPRERSKRRLRALHG 116
           ME ETAV AILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEP+DPRERSKRRLR LHG
Sbjct: 1   MEMETAVGAILGRLGRHCYAVLCLGVLLLTVAVVHYVGDGEPTDPRERSKRRLRTLHG 58

[Close]

BLAST of PI0022161 vs. NCBI nr
Match: KAE8038882.1 (hypothetical protein FH972_011351 [Carpinus fangiana])

HSP 1 Score: 81.6 bits (200), Expect = 5.4e-12
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 0


Query: 21  SSFPQN-----PNPRFFFTPSFLSFLLNLFSTFKLSLPEQRKMEAETAVAAILGRLGRHC 80
           +SFP+      P+   F  P + S +  ++S FK     +R+ E E +   +LG+LGR C
Sbjct: 522 TSFPRPPISFLPSAPCFPPPQYHSSIFTIYSNFKHHKAREREREMEIS-GGLLGKLGRQC 581

Query: 81  YAVLCLGVLLLTVAVVHYVGDGEPSDPRERSKRRLRALHGSSIR 120
           YAVLCLGVLL++V + H V   EP+DPRER+ RRLR L G   R
Sbjct: 582 YAVLCLGVLLVSVTIAHCVSAAEPTDPRERAGRRLRDLRGGPFR 624

The following BLAST results are available for this feature:

BLAST of PI0022161 vs.


Match Name	E-value	Identity	Description

BLAST of PI0022161 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC65	6.4e-27	86.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G293180 PE=4 SV=1	[more]
A0A660KR43	2.6e-12	44.23	MLO-like protein OS=Carpinus fangiana OX=176857 GN=MLO PE=3 SV=1	[more]
A0A7N2KN99	1.7e-11	70.37	Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1	[more]
A0A5E4FUM3	3.2e-10	62.26	Uncharacterized protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B035406 PE=4 SV=1	[more]
B9SK55	9.3e-10	61.02	Uncharacterized protein OS=Ricinus communis OX=3988 GN=RCOM_1401120 PE=4 SV=1	[more]

BLAST of PI0022161 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647058.1	1.4e-23	90.77	hypothetical protein Csa_023003, partial [Cucumis sativus]	[more]
KAG7010620.1	2.9e-21	93.10	Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma su...	[more]
KAG6570773.1	2.9e-21	93.10	Protein transport protein Sec61 subunit beta, partial [Cucurbita argyrosperma su...	[more]
XP_023512260.1	2.9e-21	93.10	syntaxin-71-like [Cucurbita pepo subsp. pepo]	[more]
KAE8038882.1	5.4e-12	44.23	hypothetical protein FH972_011351 [Carpinus fangiana]	[more]

BLAST of PI0022161 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0022161.1	PI0022161.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045490	pectin catabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0030599	pectinesterase activity