PI0022103 (gene) Melon (PI 482460) v1

Overview
NamePI0022103
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionUbiquitin
Locationchr03: 128180 .. 129610 (-)
RNA-Seq ExpressionPI0022103
SyntenyPI0022103
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CAACAAACCTAGTTCCCAAATATAAAACTTTCGCAACCACAGTTAGCCCTAATCTGTCAATCTACTCTCCTCGACTCGGTAAACCTGCGACTCCCCCAATATGCAGATCTTCGTGAAAACGCTTACCGGGAAGACCATAACTCTCGAGGTCGAGAGTTCTGATACCATCGATAATGTCAAGGCAAAGATTCAGGACAAGGAGGGAATACCGCCTGACCAGCAGCGTCTCATCTTTGCCGGTAAGCAGCTGGAGGATGGTCGAACTCTTGCCGACTACAACATCCAGAAGGAATCTACCCTCCATCTTGTCTTAAGGCTCCGTGGTGGTGCTAAGAAGCGCAAGAAGAAGACCTACACCAAACCTAAGAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCTCTGTTCTTCAGTTTTACAAGGTCGACGATTCAGGAAAGGTTCAGAGGCTCAGGAAGGAGTGTCCTAACGCTGAATGCGGAGCTGGTACATTTATGGCCAATCATTTCGATCGTCATTACTGTGGCAAGTGTGGTTTGACATACGTGTATCAGAAGCCCGGCGGTGATTAGGTCTTTTTTATATTACATTTTGATAGAGATTTTTTTTTATGATGATTATCATTTTGGGATAATATTAATTATTAGGATTACAAATGATCAAATGGGTCCATTTTTCATGAACTGTTTTACATTTGGAAACAATCAAATCAACGCTCAATTTTGGTTAATATTTTTGAAGCATCTTTCATATACTGGCTGTTTGCAAAAGATTTTATGCAGTTTTATACTCTCAAATCAGTGTGCTAATTACGTCATTGAAAGATCTTCAATTCTTTGGACTGGTACCCTGCTATTTATGCTTTTTTGGTCTACCCATAATGGGTTTGAAATTAGTCTTGGACCGCTTATTACTTTAGGAGTGCCCCAATGCAAATATTATTAGGTTTTTCATTTTTCATGTCACTGATAAACGAAAATACTGGGAATAAGATTTATTGCAGTTTTCTACTGCTGACTTGGGCAATCAAGTTTGGGAATGTCCTCTGACATTGGGCAATTGTTGATACTTCAACAATGGTAGGTTTTTTTTTCTTTTCTTTTTTTTAACTAGGTTTGAGTTGTGATGTCTGATATGTTTTTTTCGAGCAATTGGTGAGGCTGAATCCTGTTACCGTTTATCAAATTAGATATTTCCCCTAGCAATTAGCTTTTTGGTTTCAAACTTGCATTCAATATTTTCTCTGGCCGATGTAAACGGGCCAAAAGATTAGGGGAGTTTGCACCATTGAAGAATCATATGTTCTTATAGATGAGGCATCAACAATTGTCAAATGTCGAAGATCCATACCCCATATTATGTAATAACTTTTAGAGAATGAATGCTGGTGACAATTTTTCATTAAATTTTATTTGGTGCTTCCTTATATAAA

mRNA sequence

CAACAAACCTAGTTCCCAAATATAAAACTTTCGCAACCACAGTTAGCCCTAATCTGTCAATCTACTCTCCTCGACTCGGTAAACCTGCGACTCCCCCAATATGCAGATCTTCGTGAAAACGCTTACCGGGAAGACCATAACTCTCGAGGTCGAGAGTTCTGATACCATCGATAATGTCAAGGCAAAGATTCAGGACAAGGAGGGAATACCGCCTGACCAGCAGCGTCTCATCTTTGCCGGTAAGCAGCTGGAGGATGGTCGAACTCTTGCCGACTACAACATCCAGAAGGAATCTACCCTCCATCTTGTCTTAAGGCTCCGTGGTGGTGCTAAGAAGCGCAAGAAGAAGACCTACACCAAACCTAAGAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCTCTGTTCTTCAGTTTTACAAGGTCGACGATTCAGGAAAGGTTCAGAGGCTCAGGAAGGAGTGTCCTAACGCTGAATGCGGAGCTGGTACATTTATGGCCAATCATTTCGATCGTCATTACTGTGGCAAGTGTGGTTTGACATACGTGTATCAGAAGCCCGGCGGTGATTAGGTCTTTTTTATATTACATTTTGATAGAGATTTTTTTTTATGATGATTATCATTTTGGGATAATATTAATTATTAGGATTACAAATGATCAAATGGGTCCATTTTTCATGAACTGTTTTACATTTGGAAACAATCAAATCAACGCTCAATTTTGGTTAATATTTTTGAAGCATCTTTCATATACTGGCTGTTTGCAAAAGATTTTATGCAGTTTTATACTCTCAAATCAGTGTGCTAATTACGTCATTGAAAGATCTTCAATTCTTTGGACTGGTACCCTGCTATTTATGCTTTTTTGGTCTACCCATAATGGGTTTGAAATTAGTCTTGGACCGCTTATTACTTTAGGAGTGCCCCAATGCAAATATTATTAGGTTTTTCATTTTTCATGTCACTGATAAACGAAAATACTGGGAATAAGATTTATTGCAGTTTTCTACTGCTGACTTGGGCAATCAAGTTTGGGAATGTCCTCTGACATTGGGCAATTGTTGATACTTCAACAATGGTAGGTTTTTTTTTCTTTTCTTTTTTTTAACTAGGTTTGAGTTGTGATGTCTGATATGTTTTTTTCGAGCAATTGGTGAGGCTGAATCCTGTTACCGTTTATCAAATTAGATATTTCCCCTAGCAATTAGCTTTTTGGTTTCAAACTTGCATTCAATATTTTCTCTGGCCGATGTAAACGGGCCAAAAGATTAGGGGAGTTTGCACCATTGAAGAATCATATGTTCTTATAGATGAGGCATCAACAATTGTCAAATGTCGAAGATCCATACCCCATATTATGTAATAACTTTTAGAGAATGAATGCTGGTGACAATTTTTCATTAAATTTTATTTGGTGCTTCCTTATATAAA

Coding sequence (CDS)

ATGCAGATCTTCGTGAAAACGCTTACCGGGAAGACCATAACTCTCGAGGTCGAGAGTTCTGATACCATCGATAATGTCAAGGCAAAGATTCAGGACAAGGAGGGAATACCGCCTGACCAGCAGCGTCTCATCTTTGCCGGTAAGCAGCTGGAGGATGGTCGAACTCTTGCCGACTACAACATCCAGAAGGAATCTACCCTCCATCTTGTCTTAAGGCTCCGTGGTGGTGCTAAGAAGCGCAAGAAGAAGACCTACACCAAACCTAAGAAGATCAAGCACAAGAAGAAGAAGGTCAAGCTCTCTGTTCTTCAGTTTTACAAGGTCGACGATTCAGGAAAGGTTCAGAGGCTCAGGAAGGAGTGTCCTAACGCTGAATGCGGAGCTGGTACATTTATGGCCAATCATTTCGATCGTCATTACTGTGGCAAGTGTGGTTTGACATACGTGTATCAGAAGCCCGGCGGTGATTAG

Protein sequence

MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Homology
[Close]
BLAST of PI0022103 vs. ExPASy Swiss-Prot
Match: P62980 (Ubiquitin-40S ribosomal protein S27a OS=Solanum lycopersicum OX=4081 GN=UBI3 PE=1 SV=2)

HSP 1 Score: 304.3 bits (778), Expect = 8.0e-82
Identity = 152/156 (97.44%), Postives = 154/156 (98.72%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKL+VLQFYKVDD+GKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVY K GGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]
BLAST of PI0022103 vs. ExPASy Swiss-Prot
Match: P62981 (Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum OX=4113 GN=UBI3 PE=2 SV=2)

HSP 1 Score: 304.3 bits (778), Expect = 8.0e-82
Identity = 152/156 (97.44%), Postives = 154/156 (98.72%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKL+VLQFYKVDD+GKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDTGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVY K GGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 156

[Close]
BLAST of PI0022103 vs. ExPASy Swiss-Prot
Match: P47905 (Ubiquitin-40S ribosomal protein S27a OS=Lupinus albus OX=3870 PE=3 SV=2)

HSP 1 Score: 294.3 bits (752), Expect = 8.2e-79
Identity = 148/152 (97.37%), Postives = 149/152 (98.03%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKL+VLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 153
           CPN ECGAGTFMANHFDRHYCGKCG TYVYQK
Sbjct: 121 CPNTECGAGTFMANHFDRHYCGKCGKTYVYQK 152

[Close]
BLAST of PI0022103 vs. ExPASy Swiss-Prot
Match: P59232 (Ubiquitin-40S ribosomal protein S27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27AB PE=2 SV=2)

HSP 1 Score: 293.5 bits (750), Expect = 1.4e-78
Identity = 148/154 (96.10%), Postives = 150/154 (97.40%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKL+VLQFYKVD SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG 155
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]
BLAST of PI0022103 vs. ExPASy Swiss-Prot
Match: P59233 (Ubiquitin-40S ribosomal protein S27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27AC PE=2 SV=2)

HSP 1 Score: 293.1 bits (749), Expect = 1.8e-78
Identity = 147/154 (95.45%), Postives = 150/154 (97.40%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKL+VLQFYK+D SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG 155
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]
BLAST of PI0022103 vs. ExPASy TrEMBL
Match: A0A0A0LQL6 (Ubiquitin OS=Cucumis sativus OX=3659 GN=Csa_2G348875 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 1.8e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 156

[Close]
BLAST of PI0022103 vs. ExPASy TrEMBL
Match: A0A6J1BRE2 (Ubiquitin OS=Momordica charantia OX=3673 GN=LOC111005022 PE=3 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 1.8e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 156

[Close]
BLAST of PI0022103 vs. ExPASy TrEMBL
Match: A0A6J1HAY0 (Ubiquitin OS=Cucurbita moschata OX=3662 GN=LOC111462355 PE=3 SV=1)

HSP 1 Score: 310.5 bits (794), Expect = 4.1e-81
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKL+VLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 156

[Close]
BLAST of PI0022103 vs. ExPASy TrEMBL
Match: A0A5A7V0J4 (Ubiquitin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002180 PE=3 SV=1)

HSP 1 Score: 310.1 bits (793), Expect = 5.4e-81
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKVKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 156

[Close]
BLAST of PI0022103 vs. ExPASy TrEMBL
Match: A0A6J1BV75 (Ubiquitin OS=Momordica charantia OX=3673 GN=LOC111005021 PE=3 SV=1)

HSP 1 Score: 308.9 bits (790), Expect = 1.2e-80
Identity = 153/156 (98.08%), Postives = 156/156 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 66  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 125

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGG+KKRKKKTYTKPKKIKHKKKKVKL+VLQFYK+DDSGKVQRLRKE
Sbjct: 126 IQKESTLHLVLRLRGGSKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKIDDSGKVQRLRKE 185

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Sbjct: 186 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 221

[Close]
BLAST of PI0022103 vs. NCBI nr
Match: XP_004142977.1 (ubiquitin-40S ribosomal protein S27a [Cucumis sativus] >XP_022132060.1 ubiquitin-40S ribosomal protein S27a-like [Momordica charantia] >XP_038884166.1 ubiquitin-40S ribosomal protein S27a-like [Benincasa hispida])

HSP 1 Score: 311.6 bits (797), Expect = 3.8e-81
Identity = 156/156 (100.00%), Postives = 156/156 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 156

[Close]
BLAST of PI0022103 vs. NCBI nr
Match: XP_022961646.1 (ubiquitin-40S ribosomal protein S27a-like [Cucurbita moschata] >XP_023547140.1 ubiquitin-40S ribosomal protein S27a-like [Cucurbita pepo subsp. pepo] >KAG6598224.1 Ubiquitin-40S ribosomal protein S27a, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 310.5 bits (794), Expect = 8.5e-81
Identity = 155/156 (99.36%), Postives = 156/156 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKL+VLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 156

[Close]
BLAST of PI0022103 vs. NCBI nr
Match: KAA0061078.1 (ubiquitin-40S ribosomal protein S27a-like [Cucumis melo var. makuwa])

HSP 1 Score: 310.1 bits (793), Expect = 1.1e-80
Identity = 155/156 (99.36%), Postives = 155/156 (99.36%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKVKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 156

[Close]
BLAST of PI0022103 vs. NCBI nr
Match: XP_022132058.1 (ubiquitin-40S ribosomal protein S27a-like [Momordica charantia])

HSP 1 Score: 308.9 bits (790), Expect = 2.5e-80
Identity = 153/156 (98.08%), Postives = 156/156 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 66  MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 125

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGG+KKRKKKTYTKPKKIKHKKKKVKL+VLQFYK+DDSGKVQRLRKE
Sbjct: 126 IQKESTLHLVLRLRGGSKKRKKKTYTKPKKIKHKKKKVKLAVLQFYKIDDSGKVQRLRKE 185

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 157
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD
Sbjct: 186 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGGD 221

[Close]
BLAST of PI0022103 vs. NCBI nr
Match: KAE8652041.1 (hypothetical protein Csa_018647 [Cucumis sativus])

HSP 1 Score: 308.9 bits (790), Expect = 2.5e-80
Identity = 155/155 (100.00%), Postives = 155/155 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGG 156
           CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGG
Sbjct: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPGG 155

[Close]
BLAST of PI0022103 vs. TAIR 10
Match: AT2G47110.1 (ubiquitin 6 )

HSP 1 Score: 293.5 bits (750), Expect = 1.0e-79
Identity = 148/154 (96.10%), Postives = 150/154 (97.40%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKL+VLQFYKVD SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG 155
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]
BLAST of PI0022103 vs. TAIR 10
Match: AT2G47110.2 (ubiquitin 6 )

HSP 1 Score: 293.5 bits (750), Expect = 1.0e-79
Identity = 148/154 (96.10%), Postives = 150/154 (97.40%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKL+VLQFYKVD SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG 155
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]
BLAST of PI0022103 vs. TAIR 10
Match: AT3G62250.1 (ubiquitin 5 )

HSP 1 Score: 293.1 bits (749), Expect = 1.3e-79
Identity = 147/154 (95.45%), Postives = 150/154 (97.40%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHK KKVKL+VLQFYK+D SGKVQRLRKE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKIDGSGKVQRLRKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQKPG 155
           CPNA CGAGTFMA+HFDRHYCGKCGLTYVYQK G
Sbjct: 121 CPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 154

[Close]
BLAST of PI0022103 vs. TAIR 10
Match: AT1G23410.1 (Ribosomal protein S27a / Ubiquitin family protein )

HSP 1 Score: 277.7 bits (709), Expect = 5.7e-75
Identity = 139/152 (91.45%), Postives = 145/152 (95.39%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60

Query: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKKKKVKLSVLQFYKVDDSGKVQRLRKE 120
           IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKH  KKVKL+VLQFYKVD SGKVQRL+KE
Sbjct: 61  IQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHTHKKVKLAVLQFYKVDGSGKVQRLKKE 120

Query: 121 CPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 153
           CP+  CG GTFMA+HFDRHYCGKCG TYV++K
Sbjct: 121 CPSVSCGPGTFMASHFDRHYCGKCGTTYVFKK 152

[Close]
BLAST of PI0022103 vs. TAIR 10
Match: AT5G03240.1 (polyubiquitin 3 )

HSP 1 Score: 149.8 bits (377), Expect = 1.8e-36
Identity = 76/77 (98.70%), Postives = 77/77 (100.00%), Query Frame = 0 

Query: 1   MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 60
           MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN
Sbjct: 229 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYN 288

Query: 61  IQKESTLHLVLRLRGGA 78
           IQKESTLHLVLRLRGG+
Sbjct: 289 IQKESTLHLVLRLRGGS 305

The following BLAST results are available for this feature:
BLAST of PI0022103 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P629808.0e-8297.44Ubiquitin-40S ribosomal protein S27a OS=Solanum lycopersicum OX=4081 GN=UBI3 PE=... [more]
P629818.0e-8297.44Ubiquitin-40S ribosomal protein S27a OS=Solanum tuberosum OX=4113 GN=UBI3 PE=2 S... [more]
P479058.2e-7997.37Ubiquitin-40S ribosomal protein S27a OS=Lupinus albus OX=3870 PE=3 SV=2[more]
P592321.4e-7896.10Ubiquitin-40S ribosomal protein S27a-2 OS=Arabidopsis thaliana OX=3702 GN=RPS27A... [more]
P592331.8e-7895.45Ubiquitin-40S ribosomal protein S27a-3 OS=Arabidopsis thaliana OX=3702 GN=RPS27A... [more]
BLAST of PI0022103 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQL61.8e-81100.00Ubiquitin OS=Cucumis sativus OX=3659 GN=Csa_2G348875 PE=3 SV=1[more]
A0A6J1BRE21.8e-81100.00Ubiquitin OS=Momordica charantia OX=3673 GN=LOC111005022 PE=3 SV=1[more]
A0A6J1HAY04.1e-8199.36Ubiquitin OS=Cucurbita moschata OX=3662 GN=LOC111462355 PE=3 SV=1[more]
A0A5A7V0J45.4e-8199.36Ubiquitin OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002180 PE=... [more]
A0A6J1BV751.2e-8098.08Ubiquitin OS=Momordica charantia OX=3673 GN=LOC111005021 PE=3 SV=1[more]
BLAST of PI0022103 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004142977.13.8e-81100.00ubiquitin-40S ribosomal protein S27a [Cucumis sativus] >XP_022132060.1 ubiquitin... [more]
XP_022961646.18.5e-8199.36ubiquitin-40S ribosomal protein S27a-like [Cucurbita moschata] >XP_023547140.1 u... [more]
KAA0061078.11.1e-8099.36ubiquitin-40S ribosomal protein S27a-like [Cucumis melo var. makuwa][more]
XP_022132058.12.5e-8098.08ubiquitin-40S ribosomal protein S27a-like [Momordica charantia][more]
KAE8652041.12.5e-80100.00hypothetical protein Csa_018647 [Cucumis sativus][more]
BLAST of PI0022103 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G47110.11.0e-7996.10ubiquitin 6 [more]
AT2G47110.21.0e-7996.10ubiquitin 6 [more]
AT3G62250.11.3e-7995.45ubiquitin 5 [more]
AT1G23410.15.7e-7591.45Ribosomal protein S27a / Ubiquitin family protein [more]
AT5G03240.11.8e-3698.70polyubiquitin 3 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019956Ubiquitin domainPRINTSPR00348UBIQUITINcoord: 11..31
score: 85.2
coord: 53..74
score: 91.18
coord: 32..52
score: 95.05
IPR002906Ribosomal protein S27aSMARTSM01402Ribosomal_S27_2coord: 102..147
e-value: 3.1E-28
score: 109.8
IPR002906Ribosomal protein S27aPFAMPF01599Ribosomal_S27coord: 102..147
e-value: 1.7E-26
score: 91.9
IPR000626Ubiquitin-like domainSMARTSM00213ubq_7coord: 1..72
e-value: 3.0E-35
score: 133.1
IPR000626Ubiquitin-like domainPFAMPF00240ubiquitincoord: 3..74
e-value: 6.0E-34
score: 115.6
IPR000626Ubiquitin-like domainPROSITEPS50053UBIQUITIN_2coord: 1..76
score: 30.452106
NoneNo IPR availableGENE3D3.10.20.90coord: 1..80
e-value: 5.6E-46
score: 156.3
NoneNo IPR availablePANTHERPTHR10666UBIQUITINcoord: 1..146
NoneNo IPR availablePANTHERPTHR10666:SF363UBIQUITIN-40S RIBOSOMAL PROTEIN S27A-1coord: 1..146
NoneNo IPR availableCDDcd01803Ubl_ubiquitincoord: 1..76
e-value: 9.55332E-55
score: 164.925
IPR038582S27a-like superfamilyGENE3D6.20.50.150coord: 81..155
e-value: 7.2E-40
score: 137.2
IPR019954Ubiquitin conserved sitePROSITEPS00299UBIQUITIN_1coord: 27..52
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 100..152
IPR029071Ubiquitin-like domain superfamilySUPERFAMILY54236Ubiquitin-likecoord: 1..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0022103.1PI0022103.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019941 modification-dependent protein catabolic process
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006412 translation
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005634 nucleus
cellular_component GO:0005840 ribosome
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003729 mRNA binding
molecular_function GO:0031386 protein tag
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0005515 protein binding