PI0022094 (gene) Melon (PI 482460) v1

Overview


Name	PI0022094
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag-pol polyprotein
Location	chr05: 6041987 .. 6042529 (+)
RNA-Seq Expression	PI0022094
Synteny	PI0022094

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCGATCAAGGAAGTGGGTGAGTCAAATGTTGATGCTCTCCCCACTATACAACATGTTGCAAGCTTAAGCGTTAGAGAGAATGAGAAAAGTATGAACCATAGCTATCCTAAGGTTGATAGAAGTTTCAAATGTCGTGAGTGTGAAGATTTTGGACATTATCAAGCTGAGTGTCAAAGCTTTATGAAGGGAAAAAAGAAAAGTCTGACTATAACTCTTTCTGAGGATGAATCAACTATGAATAGTGATTGTGAAGAAAATGGCCAGCCATTGCTTGGGTGTTTCTCTAAAAGTGTTGTCGTGAAGATCGAGGATTTCGAGTCACAGAAGAATGATGGGAAAGATGTTGTTTTCCTCGTTGAACCTTTAGCTAGTGACTTGAGTGCTGACTATGTGTATGCAAAGTGGCAAGATAACCTAGTGGTGTTGAAAGAACAAAAGGACAAGATACAGTGCCTATCAACAAATAATCATCGCTTATTATCCACGATATCTATCTTAATTAAAGCAAGAGCTGAGGGCTGTTCAGATGGATTTTAG

mRNA sequence

ATGGAGTCGATCAAGGAAGTGGGTGAGTCAAATGTTGATGCTCTCCCCACTATACAACATGTTGCAAGCTTAAGCGTTAGAGAGAATGAGAAAAGTATGAACCATAGCTATCCTAAGGTTGATAGAAGTTTCAAATGTCGTGAGTGTGAAGATTTTGGACATTATCAAGCTGAGTGTCAAAGCTTTATGAAGGGAAAAAAGAAAAGTCTGACTATAACTCTTTCTGAGGATGAATCAACTATGAATAGTGATTGTGAAGAAAATGGCCAGCCATTGCTTGGGTGTTTCTCTAAAAGTGTTGTCGTGAAGATCGAGGATTTCGAGTCACAGAAGAATGATGGGAAAGATGTTGTTTTCCTCGTTGAACCTTTAGCTAGTGACTTGAGTGCTGACTATGTGTATGCAAAGTGGCAAGATAACCTAGTGGTGTTGAAAGAACAAAAGGACAAGATACAGTGCCTATCAACAAATAATCATCGCTTATTATCCACGATATCTATCTTAATTAAAGCAAGAGCTGAGGGCTGTTCAGATGGATTTTAG

Coding sequence (CDS)

ATGGAGTCGATCAAGGAAGTGGGTGAGTCAAATGTTGATGCTCTCCCCACTATACAACATGTTGCAAGCTTAAGCGTTAGAGAGAATGAGAAAAGTATGAACCATAGCTATCCTAAGGTTGATAGAAGTTTCAAATGTCGTGAGTGTGAAGATTTTGGACATTATCAAGCTGAGTGTCAAAGCTTTATGAAGGGAAAAAAGAAAAGTCTGACTATAACTCTTTCTGAGGATGAATCAACTATGAATAGTGATTGTGAAGAAAATGGCCAGCCATTGCTTGGGTGTTTCTCTAAAAGTGTTGTCGTGAAGATCGAGGATTTCGAGTCACAGAAGAATGATGGGAAAGATGTTGTTTTCCTCGTTGAACCTTTAGCTAGTGACTTGAGTGCTGACTATGTGTATGCAAAGTGGCAAGATAACCTAGTGGTGTTGAAAGAACAAAAGGACAAGATACAGTGCCTATCAACAAATAATCATCGCTTATTATCCACGATATCTATCTTAATTAAAGCAAGAGCTGAGGGCTGTTCAGATGGATTTTAG

Protein sequence

MESIKEVGESNVDALPTIQHVASLSVRENEKSMNHSYPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSKSVVVKIEDFESQKNDGKDVVFLVEPLASDLSADYVYAKWQDNLVVLKEQKDKIQCLSTNNHRLLSTISILIKARAEGCSDGF

Homology

[Close]

BLAST of PI0022094 vs. ExPASy TrEMBL
Match: A0A5D3DD57 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G001180 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 9.7e-18
Identity = 61/144 (42.36%), Postives = 87/144 (60.42%), Query Frame = 0


Query: 27  RENEKSMNHSYPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCE 86
           +E +KS + S  K DRSFKC ECE F HYQAEC +F+K K KSL +TLS++ES+ +SD E
Sbjct: 63  KEVDKSDSQSL-KNDRSFKCHECEGFRHYQAECVTFLKRKNKSLAVTLSDEESSSDSDGE 122

Query: 87  ENGQPLLGCF--SKSVVVKIEDFESQKNDGKDVVFLVEPLASDLSADYVYAKWQDNLVVL 146
             G  L+ C   ++S V K E   + K+   +        +S L  D + +KW+++  V 
Sbjct: 123 NFGTTLISCVLENESEVSKTEFVLTLKDRKTN--------SSQLKYDELLSKWEEDQEVF 182

Query: 147 KEQKDKIQCLSTNNHRLLSTISIL 169
           K QK++IQ L  +NH L+S I  L
Sbjct: 183 KVQKERIQALLEDNHHLMSMIYAL 197

[Close]

BLAST of PI0022094 vs. ExPASy TrEMBL
Match: A0A5A7UD40 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold441G00270 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 2.9e-14
Identity = 57/151 (37.75%), Postives = 83/151 (54.97%), Query Frame = 0


Query: 27  RENEKSMNHS-YPKVD---RSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMN 86
           RENEK    S + K D   RS +C E + F HYQAEC +F+K K+K L +TLS+DE+T +
Sbjct: 142 RENEKGDRESRFSKNDRSSRSIRCHEYDGFEHYQAECATFLKCKRKRLIVTLSDDEATSD 201

Query: 87  SDCEENGQPLLGCFSKSVVVKIEDFESQKN-----DGKDVVFLVEPLASDLSADYVYAKW 146
           S+ E+ G+ L     ++   K      QK      D +     +  +  DL+      KW
Sbjct: 202 SESEKIGRALTSTLIENEPSKKGGSNKQKGAITCIDYQGFSLCITSVGCDLA-----RKW 261

Query: 147 QDNLVVLKEQKDKIQCLSTNNHRLLSTISIL 169
           +   +VLK+QK++IQ L   NH L+S I+IL
Sbjct: 262 EKYQIVLKQQKERIQALIEENHHLMSCIAIL 287

[Close]

BLAST of PI0022094 vs. ExPASy TrEMBL
Match: A0A5D3DMG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00920 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.8e-11
Identity = 47/130 (36.15%), Postives = 68/130 (52.31%), Query Frame = 0


Query: 39  KVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSK 98
           K+DRS KCRECE +GHYQ EC +F + +KKS ++TLS  ++  + +  E  +  +   SK
Sbjct: 52  KIDRSLKCRECEGYGHYQVECPNFTRRQKKSFSVTLSNGDTDESDEEGECTKAFISILSK 111

Query: 99  SVVVKIEDFESQKNDGKDVVFLVEPLASDLSADYVYAKWQDNLVVLKEQKDKIQCLSTNN 158
               ++ED E +  D               S   +  KW+++  V   QK+KI  L   N
Sbjct: 112 D---EVEDSEEESED-------------KFSFKQLKIKWKEDSEVRVMQKEKIPNLMEEN 165

Query: 159 HRLLSTISIL 169
            RLLS IS L
Sbjct: 172 ERLLSVISSL 165

[Close]

BLAST of PI0022094 vs. ExPASy TrEMBL
Match: A0A5A7T1K8 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G003220 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.0e-11
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 37  YPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCF 96
           + K D+  +C ECE FGH Q +C +++K KKKSL  T S +E    SD EE G  L+   
Sbjct: 202 FEKNDKGIRCHECEGFGHIQTKCATYLKRKKKSLVATFSNEEDYSKSDEEEVGMALISII 261

Query: 97  SKSVVVKIEDFESQKNDGKDVVFLVEPLASD-LSADYVYAKWQDNLVVLKEQKDKIQCLS 156
           +       E+ E  +N     +   E ++ D L+   +  KW+++  ++  Q++ IQCL 
Sbjct: 262 N-------ENKEEVENVNAQTIDQQESVSDDSLNESALKRKWKEDQAIIIHQQEWIQCLM 321

Query: 157 TNNHRLLSTISIL 169
             N   LS+I  L
Sbjct: 322 EENQSFLSSIVTL 327

[Close]

BLAST of PI0022094 vs. ExPASy TrEMBL
Match: A0A1S4E3G5 (uncharacterized protein LOC107991877 OS=Cucumis melo OX=3656 GN=LOC107991877 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 4.0e-11
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 37  YPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCF 96
           + K D+  +C ECE FGH Q +C +++K KKKSL  T S +E    SD EE G  L+   
Sbjct: 136 FEKNDKGIRCHECEGFGHIQTKCATYLKRKKKSLVATFSNEEDYSKSDEEEVGMALISII 195

Query: 97  SKSVVVKIEDFESQKNDGKDVVFLVEPLASD-LSADYVYAKWQDNLVVLKEQKDKIQCLS 156
           +       E+ E  +N     +   E ++ D L+   +  KW+++  ++  Q++ IQCL 
Sbjct: 196 N-------ENKEEVENVNAQTIDQQESVSDDSLNESALKRKWKEDQAIIIHQQEWIQCLM 255

Query: 157 TNNHRLLSTISIL 169
             N   LS+I  L
Sbjct: 256 EENQSFLSSIVTL 261

[Close]

BLAST of PI0022094 vs. NCBI nr
Match: KAA0051793.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK21448.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-17
Identity = 61/144 (42.36%), Postives = 87/144 (60.42%), Query Frame = 0


Query: 27  RENEKSMNHSYPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCE 86
           +E +KS + S  K DRSFKC ECE F HYQAEC +F+K K KSL +TLS++ES+ +SD E
Sbjct: 63  KEVDKSDSQSL-KNDRSFKCHECEGFRHYQAECVTFLKRKNKSLAVTLSDEESSSDSDGE 122

Query: 87  ENGQPLLGCF--SKSVVVKIEDFESQKNDGKDVVFLVEPLASDLSADYVYAKWQDNLVVL 146
             G  L+ C   ++S V K E   + K+   +        +S L  D + +KW+++  V 
Sbjct: 123 NFGTTLISCVLENESEVSKTEFVLTLKDRKTN--------SSQLKYDELLSKWEEDQEVF 182

Query: 147 KEQKDKIQCLSTNNHRLLSTISIL 169
           K QK++IQ L  +NH L+S I  L
Sbjct: 183 KVQKERIQALLEDNHHLMSMIYAL 197

[Close]

BLAST of PI0022094 vs. NCBI nr
Match: KAA0053130.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95505.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 6.0e-14
Identity = 57/151 (37.75%), Postives = 83/151 (54.97%), Query Frame = 0


Query: 27  RENEKSMNHS-YPKVD---RSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMN 86
           RENEK    S + K D   RS +C E + F HYQAEC +F+K K+K L +TLS+DE+T +
Sbjct: 142 RENEKGDRESRFSKNDRSSRSIRCHEYDGFEHYQAECATFLKCKRKRLIVTLSDDEATSD 201

Query: 87  SDCEENGQPLLGCFSKSVVVKIEDFESQKN-----DGKDVVFLVEPLASDLSADYVYAKW 146
           S+ E+ G+ L     ++   K      QK      D +     +  +  DL+      KW
Sbjct: 202 SESEKIGRALTSTLIENEPSKKGGSNKQKGAITCIDYQGFSLCITSVGCDLA-----RKW 261

Query: 147 QDNLVVLKEQKDKIQCLSTNNHRLLSTISIL 169
           +   +VLK+QK++IQ L   NH L+S I+IL
Sbjct: 262 EKYQIVLKQQKERIQALIEENHHLMSCIAIL 287

[Close]

BLAST of PI0022094 vs. NCBI nr
Match: KAA0059883.1 (uncharacterized protein E6C27_scaffold108G001750 [Cucumis melo var. makuwa] >TYK24833.1 uncharacterized protein E5676_scaffold184G00920 [Cucumis melo var. makuwa])

HSP 1 Score: 79.3 bits (194), Expect = 3.7e-11
Identity = 47/130 (36.15%), Postives = 68/130 (52.31%), Query Frame = 0


Query: 39  KVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCFSK 98
           K+DRS KCRECE +GHYQ EC +F + +KKS ++TLS  ++  + +  E  +  +   SK
Sbjct: 52  KIDRSLKCRECEGYGHYQVECPNFTRRQKKSFSVTLSNGDTDESDEEGECTKAFISILSK 111

Query: 99  SVVVKIEDFESQKNDGKDVVFLVEPLASDLSADYVYAKWQDNLVVLKEQKDKIQCLSTNN 158
               ++ED E +  D               S   +  KW+++  V   QK+KI  L   N
Sbjct: 112 D---EVEDSEEESED-------------KFSFKQLKIKWKEDSEVRVMQKEKIPNLMEEN 165

Query: 159 HRLLSTISIL 169
            RLLS IS L
Sbjct: 172 ERLLSVISSL 165

[Close]

BLAST of PI0022094 vs. NCBI nr
Match: XP_016902771.1 (PREDICTED: uncharacterized protein LOC107991877 [Cucumis melo])

HSP 1 Score: 78.2 bits (191), Expect = 8.2e-11
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 37  YPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCF 96
           + K D+  +C ECE FGH Q +C +++K KKKSL  T S +E    SD EE G  L+   
Sbjct: 136 FEKNDKGIRCHECEGFGHIQTKCATYLKRKKKSLVATFSNEEDYSKSDEEEVGMALISII 195

Query: 97  SKSVVVKIEDFESQKNDGKDVVFLVEPLASD-LSADYVYAKWQDNLVVLKEQKDKIQCLS 156
           +       E+ E  +N     +   E ++ D L+   +  KW+++  ++  Q++ IQCL 
Sbjct: 196 N-------ENKEEVENVNAQTIDQQESVSDDSLNESALKRKWKEDQAIIIHQQEWIQCLM 255

Query: 157 TNNHRLLSTISIL 169
             N   LS+I  L
Sbjct: 256 EENQSFLSSIVTL 261

[Close]

BLAST of PI0022094 vs. NCBI nr
Match: KAA0035461.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK31064.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 78.2 bits (191), Expect = 8.2e-11
Identity = 44/133 (33.08%), Postives = 69/133 (51.88%), Query Frame = 0


Query: 37  YPKVDRSFKCRECEDFGHYQAECQSFMKGKKKSLTITLSEDESTMNSDCEENGQPLLGCF 96
           + K D+  +C ECE FGH Q +C +++K KKKSL  T S +E    SD EE G  L+   
Sbjct: 202 FEKNDKGIRCHECEGFGHIQTKCATYLKRKKKSLVATFSNEEDYSKSDEEEVGMALISII 261

Query: 97  SKSVVVKIEDFESQKNDGKDVVFLVEPLASD-LSADYVYAKWQDNLVVLKEQKDKIQCLS 156
           +       E+ E  +N     +   E ++ D L+   +  KW+++  ++  Q++ IQCL 
Sbjct: 262 N-------ENKEEVENVNAQTIDQQESVSDDSLNESALKRKWKEDQAIIIHQQEWIQCLM 321

Query: 157 TNNHRLLSTISIL 169
             N   LS+I  L
Sbjct: 322 EENQSFLSSIVTL 327

The following BLAST results are available for this feature:

BLAST of PI0022094 vs.


Match Name	E-value	Identity	Description

BLAST of PI0022094 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DD57	9.7e-18	42.36	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold609G...	[more]
A0A5A7UD40	2.9e-14	37.75	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold441G...	[more]
A0A5D3DMG4	1.8e-11	36.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7T1K8	4.0e-11	33.08	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G...	[more]
A0A1S4E3G5	4.0e-11	33.08	uncharacterized protein LOC107991877 OS=Cucumis melo OX=3656 GN=LOC107991877 PE=...	[more]

BLAST of PI0022094 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051793.1	2.0e-17	42.36	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK21448.1 gag-pol polyprotein [...	[more]
KAA0053130.1	6.0e-14	37.75	gag-pol polyprotein [Cucumis melo var. makuwa] >TYJ95505.1 gag-pol polyprotein [...	[more]
KAA0059883.1	3.7e-11	36.15	uncharacterized protein E6C27_scaffold108G001750 [Cucumis melo var. makuwa] >TYK...	[more]
XP_016902771.1	8.2e-11	33.08	PREDICTED: uncharacterized protein LOC107991877 [Cucumis melo]	[more]
KAA0035461.1	8.2e-11	33.08	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK31064.1 gag-pol polyprotein [...	[more]

BLAST of PI0022094 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 26..68

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0022094.1	PI0022094.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding