PI0022028 (gene) Melon (PI 482460) v1

Overview


Name	PI0022028
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon gag protein
Location	chr05: 16929123 .. 16929818 (+)
RNA-Seq Expression	PI0022028
Synteny	PI0022028

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGTCATCTAGCCCGCATAATGATAACATCCAAGTACGCTCCGACAGACTTGAGTCGGAGCAATCTCAATCGTGGAGCAGTAGTGAGCAAGACACGCCTAGTTACCCCCACCTAAAGCATGGAAAAGGGAAGGTGTTACTAGTACCAACACCGGAAAGAGATGAGCTCTGCGATGAGCTAGAAGTTGATATAGAGGATAAGGTTGTCGTTTACACGTTCATCGTTGAACGAAAGAGGAGGCAAAGAGAAGCACAGGCGAAAAGGGCAAGGGAGGAACGTCGAAAGAAGGAAGAGCGTGAGCAAAAAAGATTCGAGGAACGTCATAAGGCGGGGAGTAGACCCTTGGAAATACGTTCACTACCTAACAAAGTTGCCGTGATACAGAAGATCACGGATAAGCTCTCCAAAGTTTCCTTCGCCAAGACGCAGAAGACAATAGAGGCGTTCAAATCGACCTTAAAAAAGAAGGAAGAGAAGAAGCAAATGCTCGCGGACCTAAGCGAGCAAGTGGAGGAACTTCCTGCGAAGTACAAGGCCCTGGAAGTAGAGAGGGACGACCTCGAGGTTATTGCTGAAGAACTCGAGGATGAGCTGGGGGCGATGAGCCCAGTTGATCAAGGGACACTGCCTAAGAAACAAAGGGAGGTCGCCAGACTATCTAGAGGAAAAAAGAGAGCTGGGGAATTTTGA

mRNA sequence

ATGGCAGAGTCATCTAGCCCGCATAATGATAACATCCAAGTACGCTCCGACAGACTTGAGTCGGAGCAATCTCAATCGTGGAGCAGTAGTGAGCAAGACACGCCTAGTTACCCCCACCTAAAGCATGGAAAAGGGAAGGTGTTACTAGTACCAACACCGGAAAGAGATGAGCTCTGCGATGAGCTAGAAGTTGATATAGAGGATAAGGTTGTCGTTTACACGTTCATCGTTGAACGAAAGAGGAGGCAAAGAGAAGCACAGGCGAAAAGGGCAAGGGAGGAACGTCGAAAGAAGGAAGAGCGTGAGCAAAAAAGATTCGAGGAACGTCATAAGGCGGGGAGTAGACCCTTGGAAATACGTTCACTACCTAACAAAGTTGCCGTGATACAGAAGATCACGGATAAGCTCTCCAAAGTTTCCTTCGCCAAGACGCAGAAGACAATAGAGGCGTTCAAATCGACCTTAAAAAAGAAGGAAGAGAAGAAGCAAATGCTCGCGGACCTAAGCGAGCAAGTGGAGGAACTTCCTGCGAAGTACAAGGCCCTGGAAGTAGAGAGGGACGACCTCGAGGTTATTGCTGAAGAACTCGAGGATGAGCTGGGGGCGATGAGCCCAGTTGATCAAGGGACACTGCCTAAGAAACAAAGGGAGGTCGCCAGACTATCTAGAGGAAAAAAGAGAGCTGGGGAATTTTGA

Coding sequence (CDS)

ATGGCAGAGTCATCTAGCCCGCATAATGATAACATCCAAGTACGCTCCGACAGACTTGAGTCGGAGCAATCTCAATCGTGGAGCAGTAGTGAGCAAGACACGCCTAGTTACCCCCACCTAAAGCATGGAAAAGGGAAGGTGTTACTAGTACCAACACCGGAAAGAGATGAGCTCTGCGATGAGCTAGAAGTTGATATAGAGGATAAGGTTGTCGTTTACACGTTCATCGTTGAACGAAAGAGGAGGCAAAGAGAAGCACAGGCGAAAAGGGCAAGGGAGGAACGTCGAAAGAAGGAAGAGCGTGAGCAAAAAAGATTCGAGGAACGTCATAAGGCGGGGAGTAGACCCTTGGAAATACGTTCACTACCTAACAAAGTTGCCGTGATACAGAAGATCACGGATAAGCTCTCCAAAGTTTCCTTCGCCAAGACGCAGAAGACAATAGAGGCGTTCAAATCGACCTTAAAAAAGAAGGAAGAGAAGAAGCAAATGCTCGCGGACCTAAGCGAGCAAGTGGAGGAACTTCCTGCGAAGTACAAGGCCCTGGAAGTAGAGAGGGACGACCTCGAGGTTATTGCTGAAGAACTCGAGGATGAGCTGGGGGCGATGAGCCCAGTTGATCAAGGGACACTGCCTAAGAAACAAAGGGAGGTCGCCAGACTATCTAGAGGAAAAAAGAGAGCTGGGGAATTTTGA

Protein sequence

MAESSSPHNDNIQVRSDRLESEQSQSWSSSEQDTPSYPHLKHGKGKVLLVPTPERDELCDELEVDIEDKVVVYTFIVERKRRQREAQAKRAREERRKKEEREQKRFEERHKAGSRPLEIRSLPNKVAVIQKITDKLSKVSFAKTQKTIEAFKSTLKKKEEKKQMLADLSEQVEELPAKYKALEVERDDLEVIAEELEDELGAMSPVDQGTLPKKQREVARLSRGKKRAGEF

Homology

[Close]

BLAST of PI0022028 vs. ExPASy TrEMBL
Match: A0A5D3DR17 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00450 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-04
Identity = 32/61 (52.46%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 156 KKKEEKKQMLADLSEQVEELPAKYKAL-EVERDDLEVIAEELEDELGAMSPVDQGTLPKK 215
           +KKE+KK++LA +SEQVE+LPAK KA+ E E + L+V+AEEL++EL A+SP+++ + P+ 
Sbjct: 41  RKKEKKKEVLATISEQVEKLPAKEKAIREEEVERLKVLAEELDEELKAISPLERRSSPEN 100

[Close]

BLAST of PI0022028 vs. NCBI nr
Match: KAA0059690.1 (Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK26127.1 Retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 5.6e-04
Identity = 32/61 (52.46%), Postives = 51/61 (83.61%), Query Frame = 0


Query: 156 KKKEEKKQMLADLSEQVEELPAKYKAL-EVERDDLEVIAEELEDELGAMSPVDQGTLPKK 215
           +KKE+KK++LA +SEQVE+LPAK KA+ E E + L+V+AEEL++EL A+SP+++ + P+ 
Sbjct: 41  RKKEKKKEVLATISEQVEKLPAKEKAIREEEVERLKVLAEELDEELKAISPLERRSSPEN 100

The following BLAST results are available for this feature:

BLAST of PI0022028 vs.


Match Name	E-value	Identity	Description

BLAST of PI0022028 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DR17	2.7e-04	52.46	Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf...	[more]

BLAST of PI0022028 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0059690.1	5.6e-04	52.46	Retrotransposon gag protein [Cucumis melo var. makuwa] >TYK26127.1 Retrotranspos...	[more]

BLAST of PI0022028 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 141..199
None	No IPR available	COILS	Coil	Coil	coord: 77..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 213..231
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 201..231
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0022028.1	PI0022028.1	mRNA