PI0022018 (gene) Melon (PI 482460) v1

Overview


Name	PI0022018
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	PMD domain-containing protein
Location	chr06: 17942928 .. 17943426 (+)
RNA-Seq Expression	PI0022018
Synteny	PI0022018

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTTTTAGGAATTGCAAAGATCCATACAGATAACCTGACTCCTCTTGAAGAATATTTGAATAGCTACCTTAAGAGGGTAGACAGCTTCAATGATATACAATCTTCATATTCTGCTCAGTTGTTGTTGATGGATAAAACTCATCAATTAGACGAGAAGACATCTGCCATCAAAGAAGCCTTGACTTTGATGGACAACTATGAAAAGATGCCAAAGTTATTCAGGAGAGGGCTACACAGTTATCCTTGGAAAAGAAAGAATTGGAGAGCAGACTTCAGAGTATAAATACTGAGTCTAACAACTATCTATCTTATCTTGTGAGAAAAATGAGGACATAGATAGAAAAAAACTAGAAGTTGCTAAGCTCCAAGACGAAGCCAACACTCTTGAAAGCACCCCTACTATCACCGAAGAAGCCACCGAGGCCTTGGCTACGGTTCGTAAGAGTATGCAGGCCACACGCGAAGAATTCAAGAACTTCAAGTGGAAACTTTGA

mRNA sequence

ATGGTTCTTTTAGGAATTGCAAAGATCCATACAGATAACCTGACTCCTCTTGAAGAATATTTGAATAGCTACCTTAAGAGGGTAGACAGCTTCAATGATATACAATCTTCATATTCTGCTCAGTTGTTGTTGATGGATAAAACTCATCAATTAGACGAGAAGACATCTGCCATCAAAGAAGCCTTGACTTTGATGGACAACTATGAAAAGATGCCAAAGTTATTCAGGAGAGGGCTACACAGTTATCCTTGGAAAAGAAAGAATTGGAGAGCAGACTTCAGAAAAAATGAGGACATAGATAGAAAAAAACTAGAAGTTGCTAAGCTCCAAGACGAAGCCAACACTCTTGAAAGCACCCCTACTATCACCGAAGAAGCCACCGAGGCCTTGGCTACGGTTCGTAAGAGTATGCAGGCCACACGCGAAGAATTCAAGAACTTCAAGTGGAAACTTTGA

Coding sequence (CDS)

ATGGTTCTTTTAGGAATTGCAAAGATCCATACAGATAACCTGACTCCTCTTGAAGAATATTTGAATAGCTACCTTAAGAGGGTAGACAGCTTCAATGATATACAATCTTCATATTCTGCTCAGTTGTTGTTGATGGATAAAACTCATCAATTAGACGAGAAGACATCTGCCATCAAAGAAGCCTTGACTTTGATGGACAACTATGAAAAGATGCCAAAGTTATTCAGGAGAGGGCTACACAGTTATCCTTGGAAAAGAAAGAATTGGAGAGCAGACTTCAGAAAAAATGAGGACATAGATAGAAAAAAACTAGAAGTTGCTAAGCTCCAAGACGAAGCCAACACTCTTGAAAGCACCCCTACTATCACCGAAGAAGCCACCGAGGCCTTGGCTACGGTTCGTAAGAGTATGCAGGCCACACGCGAAGAATTCAAGAACTTCAAGTGGAAACTTTGA

Protein sequence

MVLLGIAKIHTDNLTPLEEYLNSYLKRVDSFNDIQSSYSAQLLLMDKTHQLDEKTSAIKEALTLMDNYEKMPKLFRRGLHSYPWKRKNWRADFRKNEDIDRKKLEVAKLQDEANTLESTPTITEEATEALATVRKSMQATREEFKNFKWKL

Homology

[Close]

BLAST of PI0022018 vs. ExPASy TrEMBL
Match: A0A5D3BCT1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00050 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 4.2e-38
Identity = 99/150 (66.00%), Postives = 108/150 (72.00%), Query Frame = 0


Query: 2   VLLGIAKIHTDNLTPLEEYLNSYLKRVDSFNDIQSSYSAQLLLMDKTHQLDEKTSAIKEA 61
           VL GI KIH D LTPLEEYLNSYLKRVD+FND++SSYSAQLL  DK  QLDEKT AI EA
Sbjct: 224 VLSGIEKIHADGLTPLEEYLNSYLKRVDNFNDVKSSYSAQLLSTDKARQLDEKTFAIGEA 283

Query: 62  LTLMDNYEKMPKLFRRGLHSYPWKRKNWRADFRKNEDIDRKKLEVAKLQDEANTLESTPT 121
           LTLM   EK+                  R D +K E ID+++LEV KLQDE NTLE TP 
Sbjct: 284 LTLM---EKL------------------RGDAKKIEAIDQQELEVVKLQDEVNTLEGTPA 343

Query: 122 ITEEATEALATVRKSMQATREEFKNFKWKL 152
           ITEE  EALATV KSM+ATREEFKNFKWKL
Sbjct: 344 ITEEVIEALATVCKSMEATREEFKNFKWKL 352

[Close]

BLAST of PI0022018 vs. ExPASy TrEMBL
Match: A0A5A7UJE9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2750G00310 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 9.3e-38
Identity = 101/165 (61.21%), Postives = 114/165 (69.09%), Query Frame = 0


Query: 2   VLLGIAKIHTDNLTPLEEYLNSYLKRVDSFNDIQSSYSAQLLLMDKTHQLDEKTSAIKEA 61
           VL GI KIH D+LTPLEEYLNSYLKRVD+FND+QSSYSAQLL  DK  QLDEKTS IKEA
Sbjct: 199 VLSGIKKIHVDSLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLSTDKARQLDEKTSVIKEA 258

Query: 62  LTLMDNYEKMPKLFRR-----GLHSYPWKRK--NWRADF--------RKNEDIDRKKLEV 121
           LTLMD      K+ +       L +   +R+  +   +F         K E ID++KLEV
Sbjct: 259 LTLMDQLRGDTKVIQEIVVQLSLENKELERRLQSINVEFEQLSILPCEKAEVIDQQKLEV 318

Query: 122 AKLQDEANTLESTPTITEEATEALATVRKSMQATREEFKNFKWKL 152
           AKL DE NTLESTP ITEEA E LA VRKSM+   EEFKNFKWKL
Sbjct: 319 AKLHDEVNTLESTPPITEEAIEVLARVRKSMEVAHEEFKNFKWKL 363

[Close]

BLAST of PI0022018 vs. ExPASy TrEMBL
Match: A0A5A7VHW8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00370 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 9.3e-38
Identity = 99/165 (60.00%), Postives = 112/165 (67.88%), Query Frame = 0


Query: 2   VLLGIAKIHTDNLTPLEEYLNSYLKRVDSFNDIQSSYSAQLLLMDKTHQLDEKTSAIKEA 61
           VL GI KIH D LT LEEYLNSYLKRVD+FND+QSSYSAQLL  DK  QL+EKTSAIKE 
Sbjct: 757 VLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYSAQLLSTDKARQLNEKTSAIKEV 816

Query: 62  LTLMDNYEKMPKLFRRGLHSYPWKRKNWRADFR---------------KNEDIDRKKLEV 121
           LTL+       K+ +        +RK      R               K E ID+++LEV
Sbjct: 817 LTLVKQLRGDAKVIQERTAELSLERKELEKRLRSINAESEQLSILSCEKAEAIDQQELEV 876

Query: 122 AKLQDEANTLESTPTITEEATEALATVRKSMQATREEFKNFKWKL 152
           AKLQDE NTLESTP ITEEA EALATVR+SM+A REEFKNFKW+L
Sbjct: 877 AKLQDEVNTLESTPAITEEAIEALATVRQSMEAAREEFKNFKWRL 921

[Close]

BLAST of PI0022018 vs. ExPASy TrEMBL
Match: A0A5A7V4F4 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004890 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 9.3e-38
Identity = 98/165 (59.39%), Postives = 114/165 (69.09%), Query Frame = 0


Query: 2   VLLGIAKIHTDNLTPLEEYLNSYLKRVDSFNDIQSSYSAQLLLMDKTHQLDEKTSAIKEA 61
           VL GI KIH D LT LEEYLNSYLKRVD+FND+QSS+S QLL MDK  QL+EKTSAIKEA
Sbjct: 719 VLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSHSTQLLSMDKARQLNEKTSAIKEA 778

Query: 62  LTLMDNYEKMPKLFRRGLHSYPWKRKNWRADFR---------------KNEDIDRKKLEV 121
           LTL+       K+ +  +     +RK      R               K E ID+++LEV
Sbjct: 779 LTLVKQLRGDAKVIQERIAELSLERKELEKRLRSINAESEQLSILSCEKAEAIDQQELEV 838

Query: 122 AKLQDEANTLESTPTITEEATEALATVRKSMQATREEFKNFKWKL 152
           AKL+DE NTLESTP ITEEA EALATVR+SM+A REEFKNFKW+L
Sbjct: 839 AKLRDEVNTLESTPAITEEAIEALATVRQSMEAAREEFKNFKWRL 883

[Close]

BLAST of PI0022018 vs. ExPASy TrEMBL
Match: A0A5D3BRA8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00620 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 9.3e-38
Identity = 98/165 (59.39%), Postives = 114/165 (69.09%), Query Frame = 0


Query: 2   VLLGIAKIHTDNLTPLEEYLNSYLKRVDSFNDIQSSYSAQLLLMDKTHQLDEKTSAIKEA 61
           VL GI KIH D LT LEEYLNSYLKRVD+FND+QSS+S QLL MDK  QL+EKTSAIKEA
Sbjct: 719 VLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSHSTQLLSMDKARQLNEKTSAIKEA 778

Query: 62  LTLMDNYEKMPKLFRRGLHSYPWKRKNWRADFR---------------KNEDIDRKKLEV 121
           LTL+       K+ +  +     +RK      R               K E ID+++LEV
Sbjct: 779 LTLVKQLRGDAKVIQERIAELSLERKELEKRLRSINAESEQLSILSCEKAEAIDQQELEV 838

Query: 122 AKLQDEANTLESTPTITEEATEALATVRKSMQATREEFKNFKWKL 152
           AKL+DE NTLESTP ITEEA EALATVR+SM+A REEFKNFKW+L
Sbjct: 839 AKLRDEVNTLESTPAITEEAIEALATVRQSMEAAREEFKNFKWRL 883

[Close]

BLAST of PI0022018 vs. NCBI nr
Match: KAA0054388.1 (hypothetical protein E6C27_scaffold24G001310 [Cucumis melo var. makuwa] >TYJ96814.1 hypothetical protein E5676_scaffold2750G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 8.6e-38
Identity = 99/150 (66.00%), Postives = 108/150 (72.00%), Query Frame = 0


Query: 2   VLLGIAKIHTDNLTPLEEYLNSYLKRVDSFNDIQSSYSAQLLLMDKTHQLDEKTSAIKEA 61
           VL GI KIH D LTPLEEYLNSYLKRVD+FND++SSYSAQLL  DK  QLDEKT AI EA
Sbjct: 224 VLSGIEKIHADGLTPLEEYLNSYLKRVDNFNDVKSSYSAQLLSTDKARQLDEKTFAIGEA 283

Query: 62  LTLMDNYEKMPKLFRRGLHSYPWKRKNWRADFRKNEDIDRKKLEVAKLQDEANTLESTPT 121
           LTLM   EK+                  R D +K E ID+++LEV KLQDE NTLE TP 
Sbjct: 284 LTLM---EKL------------------RGDAKKIEAIDQQELEVVKLQDEVNTLEGTPA 343

Query: 122 ITEEATEALATVRKSMQATREEFKNFKWKL 152
           ITEE  EALATV KSM+ATREEFKNFKWKL
Sbjct: 344 ITEEVIEALATVCKSMEATREEFKNFKWKL 352

[Close]

BLAST of PI0022018 vs. NCBI nr
Match: KAA0054406.1 (hypothetical protein E6C27_scaffold24G001560 [Cucumis melo var. makuwa] >TYJ96833.1 hypothetical protein E5676_scaffold2750G00310 [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.9e-37
Identity = 101/165 (61.21%), Postives = 114/165 (69.09%), Query Frame = 0


Query: 2   VLLGIAKIHTDNLTPLEEYLNSYLKRVDSFNDIQSSYSAQLLLMDKTHQLDEKTSAIKEA 61
           VL GI KIH D+LTPLEEYLNSYLKRVD+FND+QSSYSAQLL  DK  QLDEKTS IKEA
Sbjct: 199 VLSGIKKIHVDSLTPLEEYLNSYLKRVDNFNDVQSSYSAQLLSTDKARQLDEKTSVIKEA 258

Query: 62  LTLMDNYEKMPKLFRR-----GLHSYPWKRK--NWRADF--------RKNEDIDRKKLEV 121
           LTLMD      K+ +       L +   +R+  +   +F         K E ID++KLEV
Sbjct: 259 LTLMDQLRGDTKVIQEIVVQLSLENKELERRLQSINVEFEQLSILPCEKAEVIDQQKLEV 318

Query: 122 AKLQDEANTLESTPTITEEATEALATVRKSMQATREEFKNFKWKL 152
           AKL DE NTLESTP ITEEA E LA VRKSM+   EEFKNFKWKL
Sbjct: 319 AKLHDEVNTLESTPPITEEAIEVLARVRKSMEVAHEEFKNFKWKL 363

[Close]

BLAST of PI0022018 vs. NCBI nr
Match: KAA0065375.1 (hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.9e-37
Identity = 99/165 (60.00%), Postives = 112/165 (67.88%), Query Frame = 0


Query: 2   VLLGIAKIHTDNLTPLEEYLNSYLKRVDSFNDIQSSYSAQLLLMDKTHQLDEKTSAIKEA 61
           VL GI KIH D LT LEEYLNSYLKRVD+FND+QSSYSAQLL  DK  QL+EKTSAIKE 
Sbjct: 757 VLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSYSAQLLSTDKARQLNEKTSAIKEV 816

Query: 62  LTLMDNYEKMPKLFRRGLHSYPWKRKNWRADFR---------------KNEDIDRKKLEV 121
           LTL+       K+ +        +RK      R               K E ID+++LEV
Sbjct: 817 LTLVKQLRGDAKVIQERTAELSLERKELEKRLRSINAESEQLSILSCEKAEAIDQQELEV 876

Query: 122 AKLQDEANTLESTPTITEEATEALATVRKSMQATREEFKNFKWKL 152
           AKLQDE NTLESTP ITEEA EALATVR+SM+A REEFKNFKW+L
Sbjct: 877 AKLQDEVNTLESTPAITEEAIEALATVRQSMEAAREEFKNFKWRL 921

[Close]

BLAST of PI0022018 vs. NCBI nr
Match: TYK02261.1 (hypothetical protein E5676_scaffold18G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.9e-37
Identity = 98/165 (59.39%), Postives = 114/165 (69.09%), Query Frame = 0


Query: 2   VLLGIAKIHTDNLTPLEEYLNSYLKRVDSFNDIQSSYSAQLLLMDKTHQLDEKTSAIKEA 61
           VL GI KIH D LT LEEYLNSYLKRVD+FND+QSS+S QLL MDK  QL+EKTSAIKEA
Sbjct: 719 VLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSHSTQLLSMDKARQLNEKTSAIKEA 778

Query: 62  LTLMDNYEKMPKLFRRGLHSYPWKRKNWRADFR---------------KNEDIDRKKLEV 121
           LTL+       K+ +  +     +RK      R               K E ID+++LEV
Sbjct: 779 LTLVKQLRGDAKVIQERIAELSLERKELEKRLRSINAESEQLSILSCEKAEAIDQQELEV 838

Query: 122 AKLQDEANTLESTPTITEEATEALATVRKSMQATREEFKNFKWKL 152
           AKL+DE NTLESTP ITEEA EALATVR+SM+A REEFKNFKW+L
Sbjct: 839 AKLRDEVNTLESTPAITEEAIEALATVRQSMEAAREEFKNFKWRL 883

[Close]

BLAST of PI0022018 vs. NCBI nr
Match: KAA0060611.1 (hypothetical protein E6C27_scaffold22G004890 [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 1.9e-37
Identity = 98/165 (59.39%), Postives = 114/165 (69.09%), Query Frame = 0


Query: 2   VLLGIAKIHTDNLTPLEEYLNSYLKRVDSFNDIQSSYSAQLLLMDKTHQLDEKTSAIKEA 61
           VL GI KIH D LT LEEYLNSYLKRVD+FND+QSS+S QLL MDK  QL+EKTSAIKEA
Sbjct: 719 VLSGIEKIHADGLTSLEEYLNSYLKRVDNFNDVQSSHSTQLLSMDKARQLNEKTSAIKEA 778

Query: 62  LTLMDNYEKMPKLFRRGLHSYPWKRKNWRADFR---------------KNEDIDRKKLEV 121
           LTL+       K+ +  +     +RK      R               K E ID+++LEV
Sbjct: 779 LTLVKQLRGDAKVIQERIAELSLERKELEKRLRSINAESEQLSILSCEKAEAIDQQELEV 838

Query: 122 AKLQDEANTLESTPTITEEATEALATVRKSMQATREEFKNFKWKL 152
           AKL+DE NTLESTP ITEEA EALATVR+SM+A REEFKNFKW+L
Sbjct: 839 AKLRDEVNTLESTPAITEEAIEALATVRQSMEAAREEFKNFKWRL 883

The following BLAST results are available for this feature:

BLAST of PI0022018 vs.


Match Name	E-value	Identity	Description

BLAST of PI0022018 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BCT1	4.2e-38	66.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7UJE9	9.3e-38	61.21	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VHW8	9.3e-38	60.00	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5A7V4F4	9.3e-38	59.39	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A5D3BRA8	9.3e-38	59.39	PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of PI0022018 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054388.1	8.6e-38	66.00	hypothetical protein E6C27_scaffold24G001310 [Cucumis melo var. makuwa] >TYJ9681...	[more]
KAA0054406.1	1.9e-37	61.21	hypothetical protein E6C27_scaffold24G001560 [Cucumis melo var. makuwa] >TYJ9683...	[more]
KAA0065375.1	1.9e-37	60.00	hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa]	[more]
TYK02261.1	1.9e-37	59.39	hypothetical protein E5676_scaffold18G00620 [Cucumis melo var. makuwa]	[more]
KAA0060611.1	1.9e-37	59.39	hypothetical protein E6C27_scaffold22G004890 [Cucumis melo var. makuwa]	[more]

BLAST of PI0022018 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 99..119
None	No IPR available	COILS	Coil	Coil	coord: 51..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0022018.1	PI0022018.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane