PI0021970 (gene) Melon (PI 482460) v1

Overview


Name	PI0021970
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Zf-CCHC domain-containing protein
Location	chr11: 6725174 .. 6726232 (-)
RNA-Seq Expression	PI0021970
Synteny	PI0021970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAATATGAAGCTTGGCAAAATGGGCAAGAATGTGATTCTTCCAGCGGTGATGAGCAAGGAAATATTTGGAATGATAATGGAGATACTCGAATGAGACAAGTTTATAGAGGACAAGAAGCACGAAGGGAATTTCATCATGATTATAAGATGAAAATTGATCTTCCAACCTATGATGGTAAGCGTGATATTGAATCTTTTTTGGATTGGATTAAAAATACTGAAAATTTCTTCAATTATATGGATACTCCCAGTAGAAATAAAGTGCACTTGGTGGCCCTAAAGTTACGTGGAGGAGCTTCGACATGGTGGGATCAGCTTGAAATAAACAGACAAAGATATGGCAAGCCACCTGTTCGCTCATGGGAGAAAATGAAAAAACTTCTAAAAGCACGTTTTTTTACCTCCAAACTATAAACAAACGCTATATAATCAGTATGAAAACTATTGCAAAAGAAGCAAATCAGTAATAGAATACATTGAAGAATTTTACAGACTAAGTGCTAGAACCAATCTGAGTGAGAATGAACAACATCAGATTGCACGGTTCATTGGTGGCCTAAGATTTGATATAAAGGAAAAGGTGAAATTACAACCATTCCGTTTTTATCTGAAGCTATTTCCCTTGCAGAAATTGTAGAAGAAATGATGGCTGCAAGATCTAAGAATACTAACAGAAAGAATATATGGGAAACGAATTTTTCAAAGAAGCAATCTTACAATAATAAAGCAAATGAGCAACCTTCAACATCTATTGCGGAAAAAGGCAAAGATGTTGAAGCACAAGAGGCAGCCAAGAAGAAAGAAAATGCGGGCAAGGGAAAGGTTCAGAATAATTACAATCGATCATCATTAGGCAAGTGTTTTAGGTGTGGCCAAACTGGTCATTTATCTAATACTTGTCCTCAACGAAAGACGATAGCTTTGGCTGAAGAAGAGTATGATTCAACAAGTGATAACAGCAAAACAGTGGAAGAAGAAACCGAGTTAATTGAAGTTGATGATGGTGACAAGATATCTTGCGTTATTCAAAGAGTCCTAATTACCCTTAAATAA

mRNA sequence

ATGGAGGAATATGAAGCTTGGCAAAATGGGCAAGAATGTGATTCTTCCAGCGGTGATGAGCAAGGAAATATTTGGAATGATAATGGAGATACTCGAATGAGACAAGTTTATAGAGGACAAGAAGCACGAAGGGAATTTCATCATGATTATAAGATGAAAATTGATCTTCCAACCTATGATGAAATTGTAGAAGAAATGATGGCTGCAAGATCTAAGAATACTAACAGAAAGAATATATGGGAAACGAATTTTTCAAAGAAGCAATCTTACAATAATAAAGCAAATGAGCAACCTTCAACATCTATTGCGGAAAAAGGCAAAGATGTTGAAGCACAAGAGGCAGCCAAGAAGAAAGAAAATGCGGGCAAGGGAAAGGTTCAGAATAATTACAATCGATCATCATTAGGCAAGTGTTTTAGGTGTGGCCAAACTGGTCATTTATCTAATACTTGTCCTCAACGAAAGACGATAGCTTTGGCTGAAGAAGAGTATGATTCAACAAGTGATAACAGCAAAACAGTGGAAGAAGAAACCGAGTTAATTGAAGTTGATGATGGTGACAAGATATCTTGCGTTATTCAAAGAGTCCTAATTACCCTTAAATAA

Coding sequence (CDS)

ATGGAGGAATATGAAGCTTGGCAAAATGGGCAAGAATGTGATTCTTCCAGCGGTGATGAGCAAGGAAATATTTGGAATGATAATGGAGATACTCGAATGAGACAAGTTTATAGAGGACAAGAAGCACGAAGGGAATTTCATCATGATTATAAGATGAAAATTGATCTTCCAACCTATGATGAAATTGTAGAAGAAATGATGGCTGCAAGATCTAAGAATACTAACAGAAAGAATATATGGGAAACGAATTTTTCAAAGAAGCAATCTTACAATAATAAAGCAAATGAGCAACCTTCAACATCTATTGCGGAAAAAGGCAAAGATGTTGAAGCACAAGAGGCAGCCAAGAAGAAAGAAAATGCGGGCAAGGGAAAGGTTCAGAATAATTACAATCGATCATCATTAGGCAAGTGTTTTAGGTGTGGCCAAACTGGTCATTTATCTAATACTTGTCCTCAACGAAAGACGATAGCTTTGGCTGAAGAAGAGTATGATTCAACAAGTGATAACAGCAAAACAGTGGAAGAAGAAACCGAGTTAATTGAAGTTGATGATGGTGACAAGATATCTTGCGTTATTCAAAGAGTCCTAATTACCCTTAAATAA

Protein sequence

MEEYEAWQNGQECDSSSGDEQGNIWNDNGDTRMRQVYRGQEARREFHHDYKMKIDLPTYDEIVEEMMAARSKNTNRKNIWETNFSKKQSYNNKANEQPSTSIAEKGKDVEAQEAAKKKENAGKGKVQNNYNRSSLGKCFRCGQTGHLSNTCPQRKTIALAEEEYDSTSDNSKTVEEETELIEVDDGDKISCVIQRVLITLK

Homology

[Close]

BLAST of PI0021970 vs. ExPASy TrEMBL
Match: A0A5A7UE06 (Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00690 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.5e-83
Identity = 162/194 (83.51%), Postives = 172/194 (88.66%), Query Frame = 0


Query: 1   MEEYEAWQNGQECDSSSGDEQGNIWNDNGDTRMRQVYRGQEARREFHHDYKMKIDLPTYD 60
           MEEY+AWQN QECDSSSGDE GN WN+NGD RMRQVYRG EARRE HHDYKMKI LPTY+
Sbjct: 16  MEEYDAWQNEQECDSSSGDEHGNTWNENGDIRMRQVYRGHEARREVHHDYKMKIGLPTYN 75

Query: 61  EIVEEMMAARSKNTNRKNIWETNFSKKQSYNNKANEQPSTSIAEKGKDVEAQEAAKKKEN 120
           E +EEMMAAR KN NRKNIWETN SKKQSY N AN+QPSTSIAEKGKDVEA EA KKKEN
Sbjct: 76  ETIEEMMAARLKNINRKNIWETNLSKKQSYTNNANKQPSTSIAEKGKDVEAPEATKKKEN 135

Query: 121 AGKGKVQNNYNRSSLGKCFRCGQTGHLSNTCPQRKTIALAEEEYDSTSDNSKTVEEETEL 180
           A KG+  NNYNR SLGKCFRCGQTGHLSNTCPQRKTIALA+EEYDS SD SKTVEEETEL
Sbjct: 136 AVKGRAPNNYNRPSLGKCFRCGQTGHLSNTCPQRKTIALADEEYDSASDGSKTVEEETEL 195

Query: 181 IEVDDGDKISCVIQ 195
           IE DDG++ISCVI+
Sbjct: 196 IEADDGERISCVIR 209

[Close]

BLAST of PI0021970 vs. ExPASy TrEMBL
Match: A0A5D3CJ99 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00470 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 1.4e-62
Identity = 156/321 (48.60%), Postives = 174/321 (54.21%), Query Frame = 0


Query: 1   MEEYEAWQNGQECDSSSGDEQGNIWNDNGDTRMRQVYRGQEARREFHHDYKMKIDLPTY- 60
           MEEYEAWQNGQECDSSS DEQGNIWNDN D +MRQVYRG EA+RE HHDYKMKIDLPTY 
Sbjct: 121 MEEYEAWQNGQECDSSSSDEQGNIWNDNRDMQMRQVYRGHEAQREVHHDYKMKIDLPTYK 180

Query: 61  ---------------------------------------------DEI------------ 120
                                                        D++            
Sbjct: 181 GKHDLESFLDWIENTENFFNYMDTFDRKKVHLVALKLRGGASAWWDQVEINRQRYGKPPI 240

Query: 121 -------------------------------------------------------VEEMM 180
                                                                  VEEMM
Sbjct: 241 CSWEKMKKLMKARFLPPNYEQTLYNQYQNCRQGSKSVAEYIKEFHKLSARTNLKTVEEMM 300

Query: 181 AARSKNTNRKNIWETNFSKKQSYNNKANEQPSTSIAEKGKDVEAQEAAKKKENAGKGKVQ 201
           AAR +NTNRK  WET+FSKKQSY+NK NEQPSTS+AEK KDVEAQEA KKKENAGKGKVQ
Sbjct: 301 AARLRNTNRKTTWETDFSKKQSYSNKTNEQPSTSVAEKSKDVEAQEATKKKENAGKGKVQ 360

[Close]

BLAST of PI0021970 vs. ExPASy TrEMBL
Match: A0A5D3E417 (Transposon Ty3-I Gag-Pol polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00630 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 2.6e-51
Identity = 138/323 (42.72%), Postives = 158/323 (48.92%), Query Frame = 0


Query: 2   EEYEAWQNGQECDSSSGDEQGNIWNDNGDTRMRQVYRGQEARREFHHDYKMKIDLPTYD- 61
           EEYE WQN Q+ DSS GDEQGNIWND+G+ RM Q YRGQEARRE +HDYKMKIDLPTY+ 
Sbjct: 78  EEYEHWQNTQDHDSSIGDEQGNIWNDDGEFRMAQGYRGQEARRETYHDYKMKIDLPTYNG 137

Query: 62  ------------------------------------------------------------ 121
                                                                       
Sbjct: 138 KRDIESFLDWIKNTENFFKYMVPPDRKKVHLVALKLKGGASAWPVSYPQIMNRHYSQYQN 197

Query: 122 ------------------------------------------------------------ 181
                                                                       
Sbjct: 198 CRQGSQLVAEYIEEFHRLGARINLSENEQHQIARFIGGLRFDIKEKVKLHSFRVLSEAIS 257

Query: 182 --EIVEEMMAARSKNTNRKNIWETNFSKKQSYNNKANEQPSTSIAEKGKDVEAQEAAKKK 202
             E VEEMM  R KN+NR+  WETN SKKQSY  K +EQPSTS+ +KGK ++ QE  KKK
Sbjct: 258 LAETVEEMMTVRLKNSNRRTAWETNPSKKQSYGKKTDEQPSTSMVDKGKAIDIQETNKKK 317

[Close]

BLAST of PI0021970 vs. ExPASy TrEMBL
Match: A0A5A7UQ86 (RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G001990 PE=4 SV=1)

HSP 1 Score: 189.9 bits (481), Expect = 1.0e-44
Identity = 122/213 (57.28%), Postives = 139/213 (65.26%), Query Frame = 0


Query: 1   MEEYEAWQNGQECDSSSGDEQGNIWNDNGDTRMRQVYRGQEARREFHHDYKMKIDLPTYD 60
           +E+ +AWQN QE DSSSGDE+GNIW+DNGD +MRQ YRG EARRE HHDYKMK+DLPTY+
Sbjct: 121 LEKGDAWQNRQEYDSSSGDERGNIWDDNGDIQMRQAYRGHEARREVHHDYKMKLDLPTYN 180

Query: 61  EIVE-EMMAARSKNT-NRKNIWETNFSKK----------QSYNNKANEQPSTSIAEKGKD 120
              + E    R KNT N     +T   KK           +   K NEQPSTS AEKGKD
Sbjct: 181 GKCDIESFLDRIKNTENFFKYMDTPDRKKVHLMALKLRGGTSACKTNEQPSTSTAEKGKD 240

Query: 121 VEAQEAAKKKENAGKGKVQNNYNRSSLGKCFRCGQTGHLSNTCPQRKTIALAEEEYDSTS 180
           VEAQ+AAKKKENAGKGK                            RKT+ALA+EEYD+ S
Sbjct: 241 VEAQKAAKKKENAGKGK----------------------------RKTVALADEEYDAAS 300

Query: 181 DNSKTVEEETELIEVDDGDKISCVIQRVLITLK 202
           D+SKT+EEETELIE DDGD ISCVIQRVLI  K
Sbjct: 301 DDSKTIEEETELIEADDGDSISCVIQRVLIAPK 305

[Close]

BLAST of PI0021970 vs. ExPASy TrEMBL
Match: A0A5A7T256 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G003810 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.7e-39
Identity = 95/156 (60.90%), Postives = 116/156 (74.36%), Query Frame = 0


Query: 48  HDYKMKIDLPTYDEIVEEMMAARSKNTNRKNIWETNFSKKQSYNNKANEQPSTSIAEKGK 107
           H +++  +  +  E VEEMM  R KN+NR+  WETN SKKQSY  K +EQPSTS+ +KGK
Sbjct: 60  HSFRVLSEAISLAETVEEMMTVRLKNSNRRTAWETNPSKKQSYGKKTDEQPSTSMVDKGK 119

Query: 108 DVEAQEAAKKKENAGKGKVQNNYNRSSLGKCFRCGQTGHLSNTCPQRKTIALAEEE--YD 167
            ++ QE  KKKE+  +GK QNNY R SLGKCFRCG+ GHLSN C QRKTIALAE+E  Y 
Sbjct: 120 AIDIQETNKKKESLVRGKTQNNYTRPSLGKCFRCGEPGHLSNNCSQRKTIALAEDEDTYM 179

Query: 168 STSDNSKTVEEETELIEVDDGDKISCVIQRVLITLK 202
           S +D  +  EEETELIE DDGD+ISC++QRVLIT K
Sbjct: 180 SGTDREEE-EEETELIEADDGDRISCIVQRVLITPK 214

[Close]

BLAST of PI0021970 vs. NCBI nr
Match: KAA0054243.1 (zf-CCHC domain-containing protein [Cucumis melo var. makuwa] >TYK15028.1 zf-CCHC domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 318.9 bits (816), Expect = 3.1e-83
Identity = 162/194 (83.51%), Postives = 172/194 (88.66%), Query Frame = 0


Query: 1   MEEYEAWQNGQECDSSSGDEQGNIWNDNGDTRMRQVYRGQEARREFHHDYKMKIDLPTYD 60
           MEEY+AWQN QECDSSSGDE GN WN+NGD RMRQVYRG EARRE HHDYKMKI LPTY+
Sbjct: 16  MEEYDAWQNEQECDSSSGDEHGNTWNENGDIRMRQVYRGHEARREVHHDYKMKIGLPTYN 75

Query: 61  EIVEEMMAARSKNTNRKNIWETNFSKKQSYNNKANEQPSTSIAEKGKDVEAQEAAKKKEN 120
           E +EEMMAAR KN NRKNIWETN SKKQSY N AN+QPSTSIAEKGKDVEA EA KKKEN
Sbjct: 76  ETIEEMMAARLKNINRKNIWETNLSKKQSYTNNANKQPSTSIAEKGKDVEAPEATKKKEN 135

Query: 121 AGKGKVQNNYNRSSLGKCFRCGQTGHLSNTCPQRKTIALAEEEYDSTSDNSKTVEEETEL 180
           A KG+  NNYNR SLGKCFRCGQTGHLSNTCPQRKTIALA+EEYDS SD SKTVEEETEL
Sbjct: 136 AVKGRAPNNYNRPSLGKCFRCGQTGHLSNTCPQRKTIALADEEYDSASDGSKTVEEETEL 195

Query: 181 IEVDDGDKISCVIQ 195
           IE DDG++ISCVI+
Sbjct: 196 IEADDGERISCVIR 209

[Close]

BLAST of PI0021970 vs. NCBI nr
Match: TYK11204.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 249.2 bits (635), Expect = 3.0e-62
Identity = 156/321 (48.60%), Postives = 174/321 (54.21%), Query Frame = 0


Query: 1   MEEYEAWQNGQECDSSSGDEQGNIWNDNGDTRMRQVYRGQEARREFHHDYKMKIDLPTY- 60
           MEEYEAWQNGQECDSSS DEQGNIWNDN D +MRQVYRG EA+RE HHDYKMKIDLPTY 
Sbjct: 121 MEEYEAWQNGQECDSSSSDEQGNIWNDNRDMQMRQVYRGHEAQREVHHDYKMKIDLPTYK 180

Query: 61  ---------------------------------------------DEI------------ 120
                                                        D++            
Sbjct: 181 GKHDLESFLDWIENTENFFNYMDTFDRKKVHLVALKLRGGASAWWDQVEINRQRYGKPPI 240

Query: 121 -------------------------------------------------------VEEMM 180
                                                                  VEEMM
Sbjct: 241 CSWEKMKKLMKARFLPPNYEQTLYNQYQNCRQGSKSVAEYIKEFHKLSARTNLKTVEEMM 300

Query: 181 AARSKNTNRKNIWETNFSKKQSYNNKANEQPSTSIAEKGKDVEAQEAAKKKENAGKGKVQ 201
           AAR +NTNRK  WET+FSKKQSY+NK NEQPSTS+AEK KDVEAQEA KKKENAGKGKVQ
Sbjct: 301 AARLRNTNRKTTWETDFSKKQSYSNKTNEQPSTSVAEKSKDVEAQEATKKKENAGKGKVQ 360

[Close]

BLAST of PI0021970 vs. NCBI nr
Match: TYK30863.1 (transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 211.8 bits (538), Expect = 5.3e-51
Identity = 138/323 (42.72%), Postives = 158/323 (48.92%), Query Frame = 0


Query: 2   EEYEAWQNGQECDSSSGDEQGNIWNDNGDTRMRQVYRGQEARREFHHDYKMKIDLPTYD- 61
           EEYE WQN Q+ DSS GDEQGNIWND+G+ RM Q YRGQEARRE +HDYKMKIDLPTY+ 
Sbjct: 78  EEYEHWQNTQDHDSSIGDEQGNIWNDDGEFRMAQGYRGQEARRETYHDYKMKIDLPTYNG 137

Query: 62  ------------------------------------------------------------ 121
                                                                       
Sbjct: 138 KRDIESFLDWIKNTENFFKYMVPPDRKKVHLVALKLKGGASAWPVSYPQIMNRHYSQYQN 197

Query: 122 ------------------------------------------------------------ 181
                                                                       
Sbjct: 198 CRQGSQLVAEYIEEFHRLGARINLSENEQHQIARFIGGLRFDIKEKVKLHSFRVLSEAIS 257

Query: 182 --EIVEEMMAARSKNTNRKNIWETNFSKKQSYNNKANEQPSTSIAEKGKDVEAQEAAKKK 202
             E VEEMM  R KN+NR+  WETN SKKQSY  K +EQPSTS+ +KGK ++ QE  KKK
Sbjct: 258 LAETVEEMMTVRLKNSNRRTAWETNPSKKQSYGKKTDEQPSTSMVDKGKAIDIQETNKKK 317

[Close]

BLAST of PI0021970 vs. NCBI nr
Match: KAA0057344.1 (RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 189.9 bits (481), Expect = 2.2e-44
Identity = 122/213 (57.28%), Postives = 139/213 (65.26%), Query Frame = 0


Query: 1   MEEYEAWQNGQECDSSSGDEQGNIWNDNGDTRMRQVYRGQEARREFHHDYKMKIDLPTYD 60
           +E+ +AWQN QE DSSSGDE+GNIW+DNGD +MRQ YRG EARRE HHDYKMK+DLPTY+
Sbjct: 121 LEKGDAWQNRQEYDSSSGDERGNIWDDNGDIQMRQAYRGHEARREVHHDYKMKLDLPTYN 180

Query: 61  EIVE-EMMAARSKNT-NRKNIWETNFSKK----------QSYNNKANEQPSTSIAEKGKD 120
              + E    R KNT N     +T   KK           +   K NEQPSTS AEKGKD
Sbjct: 181 GKCDIESFLDRIKNTENFFKYMDTPDRKKVHLMALKLRGGTSACKTNEQPSTSTAEKGKD 240

Query: 121 VEAQEAAKKKENAGKGKVQNNYNRSSLGKCFRCGQTGHLSNTCPQRKTIALAEEEYDSTS 180
           VEAQ+AAKKKENAGKGK                            RKT+ALA+EEYD+ S
Sbjct: 241 VEAQKAAKKKENAGKGK----------------------------RKTVALADEEYDAAS 300

Query: 181 DNSKTVEEETELIEVDDGDKISCVIQRVLITLK 202
           D+SKT+EEETELIE DDGD ISCVIQRVLI  K
Sbjct: 301 DDSKTIEEETELIEADDGDSISCVIQRVLIAPK 305

[Close]

BLAST of PI0021970 vs. NCBI nr
Match: KAA0035681.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 3.6e-39
Identity = 95/156 (60.90%), Postives = 116/156 (74.36%), Query Frame = 0


Query: 48  HDYKMKIDLPTYDEIVEEMMAARSKNTNRKNIWETNFSKKQSYNNKANEQPSTSIAEKGK 107
           H +++  +  +  E VEEMM  R KN+NR+  WETN SKKQSY  K +EQPSTS+ +KGK
Sbjct: 60  HSFRVLSEAISLAETVEEMMTVRLKNSNRRTAWETNPSKKQSYGKKTDEQPSTSMVDKGK 119

Query: 108 DVEAQEAAKKKENAGKGKVQNNYNRSSLGKCFRCGQTGHLSNTCPQRKTIALAEEE--YD 167
            ++ QE  KKKE+  +GK QNNY R SLGKCFRCG+ GHLSN C QRKTIALAE+E  Y 
Sbjct: 120 AIDIQETNKKKESLVRGKTQNNYTRPSLGKCFRCGEPGHLSNNCSQRKTIALAEDEDTYM 179

Query: 168 STSDNSKTVEEETELIEVDDGDKISCVIQRVLITLK 202
           S +D  +  EEETELIE DDGD+ISC++QRVLIT K
Sbjct: 180 SGTDREEE-EEETELIEADDGDRISCIVQRVLITPK 214

The following BLAST results are available for this feature:

BLAST of PI0021970 vs.


Match Name	E-value	Identity	Description

BLAST of PI0021970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UE06	1.5e-83	83.51	Zf-CCHC domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5D3CJ99	1.4e-62	48.60	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold22...	[more]
A0A5D3E417	2.6e-51	42.72	Transposon Ty3-I Gag-Pol polyprotein isoform X1 OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7UQ86	1.0e-44	57.28	RNA-directed DNA polymerase-like protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7T256	1.7e-39	60.90	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold28...	[more]

BLAST of PI0021970 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054243.1	3.1e-83	83.51	zf-CCHC domain-containing protein [Cucumis melo var. makuwa] >TYK15028.1 zf-CCHC...	[more]
TYK11204.1	3.0e-62	48.60	reverse transcriptase [Cucumis melo var. makuwa]	[more]
TYK30863.1	5.3e-51	42.72	transposon Ty3-I Gag-Pol polyprotein isoform X1 [Cucumis melo var. makuwa]	[more]
KAA0057344.1	2.2e-44	57.28	RNA-directed DNA polymerase-like protein [Cucumis melo var. makuwa]	[more]
KAA0035681.1	3.6e-39	60.90	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of PI0021970 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 157..177
None	No IPR available	GENE3D	4.10.60.10		coord: 129..157 e-value: 9.9E-8 score: 33.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..33
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 9..30
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 89..128
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 137..153 e-value: 1.4E-4 score: 31.2
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 136..153 e-value: 6.6E-6 score: 26.0
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 137..153 score: 10.625204
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 124..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021970.1	PI0021970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006259	DNA metabolic process
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding