PI0021914 (gene) Melon (PI 482460) v1

Overview
NamePI0021914
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Locationchr08: 3881754 .. 3882248 (-)
RNA-Seq ExpressionPI0021914
SyntenyPI0021914
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGCACGCGCGAAGACGTTCGTCGATGTGGGGTCGAATGTGCTTGGAAGGTACGAGGGATTTCCCGCTGACGATGGAAACAATATAGAGATCCTTATGATGTATAGTCAGGGACTAGACATGTCGCCTAATGACATCATGGGCACACAACCTGATCGCTCAAGTGAGGGGAGGATTGGTTCAAGCGGATCCAAGAGAAAGCGGGGAGGCCAAACGGTAGAAACTATGGAAATCATTCGCAATGCAATGGACTATGCAAATGACCAGCTGAAGGCCATTGCAGAGTGGTTGAATTTACAACGTCAAGATGAGCGTGCCTCCCGTGCAGAAGTCGTTAGACAATTACAGGGAATCCCTGAACTGAGTACCCACGACAGGATGCACCTTATGCAGATACTGATGTGCAATGTCAATGATATGAAAGCATTTTTTGAGGTACTCGAGGAGCTTAAATTGGACTATTGCACAGTCATTCTCGAAGATAGCGCTTGA

mRNA sequence

ATGGGAGCACGCGCGAAGACGTTCGTCGATGTGGGGTCGAATGTGCTTGGAAGGTACGAGGGATTTCCCGCTGACGATGGAAACAATATAGAGATCCTTATGATGTATAGTCAGGGACTAGACATGTCGCCTAATGACATCATGGGCACACAACCTGATCGCTCAAGTGAGGGGAGGATTGGTTCAAGCGGATCCAAGAGAAAGCGGGGAGGCCAAACGGTAGAAACTATGGAAATCATTCGCAATGCAATGGACTATGCAAATGACCAGCTGAAGGCCATTGCAGAGTGGTTGAATTTACAACGTCAAGATGAGCGTGCCTCCCGTGCAGAAGTCGTTAGACAATTACAGGGAATCCCTGAACTGAGTACCCACGACAGGATGCACCTTATGCAGATACTGATGTGCAATGTCAATGATATGAAAGCATTTTTTGAGGTACTCGAGGAGCTTAAATTGGACTATTGCACAGTCATTCTCGAAGATAGCGCTTGA

Coding sequence (CDS)

ATGGGAGCACGCGCGAAGACGTTCGTCGATGTGGGGTCGAATGTGCTTGGAAGGTACGAGGGATTTCCCGCTGACGATGGAAACAATATAGAGATCCTTATGATGTATAGTCAGGGACTAGACATGTCGCCTAATGACATCATGGGCACACAACCTGATCGCTCAAGTGAGGGGAGGATTGGTTCAAGCGGATCCAAGAGAAAGCGGGGAGGCCAAACGGTAGAAACTATGGAAATCATTCGCAATGCAATGGACTATGCAAATGACCAGCTGAAGGCCATTGCAGAGTGGTTGAATTTACAACGTCAAGATGAGCGTGCCTCCCGTGCAGAAGTCGTTAGACAATTACAGGGAATCCCTGAACTGAGTACCCACGACAGGATGCACCTTATGCAGATACTGATGTGCAATGTCAATGATATGAAAGCATTTTTTGAGGTACTCGAGGAGCTTAAATTGGACTATTGCACAGTCATTCTCGAAGATAGCGCTTGA

Protein sequence

MGARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIPELSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA
Homology
BLAST of PI0021914 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 1.3e-56
Identity = 113/159 (71.07%), Postives = 135/159 (84.91%), Query Frame = 0

Query: 6   KTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGS 65
           +TF DVGSN    YEGF ADDGN++EI MMYSQG+DM  +DIMGT+PDRS+EGR GSSGS
Sbjct: 6   ETFTDVGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGS 65

Query: 66  KRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIPELSTH 125
           KRK+GGQ VETMEIIRN M+++ND+LKAI EWLN+QRQD  A   EVVRQLQ IPELS +
Sbjct: 66  KRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSRY 125

Query: 126 DRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA 165
           DR+  MQILMCNV+DMKAF ++L+ELKLDYCT+I +D+A
Sbjct: 126 DRVRSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA 164

BLAST of PI0021914 vs. ExPASy TrEMBL
Match: A0A5A7TZA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00090 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 7.7e-38
Identity = 87/162 (53.70%), Postives = 120/162 (74.07%), Query Frame = 0

Query: 2   GARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIG 61
           G RA++F DVGSN    Y+ F A+  ++ +   MYS+GL+MSP+++MGT+  R SEGR  
Sbjct: 113 GGRAESFADVGSNDPTGYDAFAANAASDTDFQPMYSRGLNMSPDELMGTRTARVSEGRYV 172

Query: 62  SSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIPE 121
           SSGSK+KRGG T+++ +I+R A++Y N+QL  IAEW  LQRQD   +R EVVRQL+ IPE
Sbjct: 173 SSGSKQKRGGSTIDSGDILRTAIEYGNEQLNRIAEWHVLQRQDATQTRQEVVRQLEAIPE 232

Query: 122 LSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDS 164
           L+  DR  LM+IL+ NVNDMKAF EV + +K  YC++ILE++
Sbjct: 233 LTLMDRCRLMRILIHNVNDMKAFLEVPDNMK-PYCSIILEEN 273

BLAST of PI0021914 vs. ExPASy TrEMBL
Match: A0A5A7TYQ6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G002060 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 2.2e-37
Identity = 85/162 (52.47%), Postives = 116/162 (71.60%), Query Frame = 0

Query: 2   GARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIG 61
           G RA++F D+GSN    Y+ F ADD ++ + L MYS GL+MSP+D+M T+  R SE R  
Sbjct: 111 GGRAESFADIGSNDPAGYDAFAADDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNV 170

Query: 62  SSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIPE 121
           SSGSKRKR G   ++ +I+R AM+Y N+QL  IAEW  LQRQD   +R E+VRQL+ IPE
Sbjct: 171 SSGSKRKRSGHATDSGDIVRTAMEYGNEQLHRIAEWPILQRQDATETRQEIVRQLEVIPE 230

Query: 122 LSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDS 164
           L+  DR  LM+I+M NV+DMKAF EV + +K  YC++IL+++
Sbjct: 231 LTLMDRCRLMRIIMRNVDDMKAFLEVPDNMKYPYCSIILQEN 272

BLAST of PI0021914 vs. ExPASy TrEMBL
Match: A0A5D3CL79 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00920 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 8.5e-37
Identity = 89/151 (58.94%), Postives = 110/151 (72.85%), Query Frame = 0

Query: 1   MGARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRI 60
           MG R K FVDVGSNV   YEGF  D  N++EI  MYS+GLDMS   I GT+   ++E R 
Sbjct: 1   MGGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRA 60

Query: 61  GSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIP 120
           G S SK+K+GGQ++ET+EIIRN M+YANDQLKAIAEW N+Q QD   +R E VRQLQGI 
Sbjct: 61  GLSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGIL 120

Query: 121 ELSTHDRMHLMQILMCNVNDMKAFFEVLEEL 152
           ELS  D+ H + +LM NVNDMKA  +V +++
Sbjct: 121 ELSRLDKAHCICLLMHNVNDMKASLDVSDDM 151

BLAST of PI0021914 vs. ExPASy TrEMBL
Match: A0A5A7VIQ2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G00470 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 7.2e-36
Identity = 92/162 (56.79%), Postives = 114/162 (70.37%), Query Frame = 0

Query: 3   ARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGS 62
           A  +TFVDV SNV   YEGFPA+DGN+ EI M+Y                   SEGR  S
Sbjct: 10  ACVETFVDVRSNVFEVYEGFPANDGNDSEIPMIYG----------------HLSEGRNAS 69

Query: 63  SGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIPEL 122
           S SKRK G QT ET++II NA++Y N QLKAIA+  N+QRQ + ASRAEV+ QLQGIP+L
Sbjct: 70  SRSKRKWGDQTTETVKIICNAIEYTNGQLKAIAKRSNVQRQADDASRAEVMSQLQGIPKL 129

Query: 123 STHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA 165
           ST DR+ L+ I+M NV++M+AF EV +ELKLDYCT +LED+A
Sbjct: 130 STRDRVRLLWIIMHNVHNMRAFLEVPDELKLDYCTTMLEDNA 155

BLAST of PI0021914 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 229.2 bits (583), Expect = 2.6e-56
Identity = 113/159 (71.07%), Postives = 135/159 (84.91%), Query Frame = 0

Query: 6   KTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGSSGS 65
           +TF DVGSN    YEGF ADDGN++EI MMYSQG+DM  +DIMGT+PDRS+EGR GSSGS
Sbjct: 6   ETFTDVGSNFPEGYEGFSADDGNDMEIPMMYSQGIDMLSDDIMGTRPDRSTEGRTGSSGS 65

Query: 66  KRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIPELSTH 125
           KRK+GGQ VETMEIIRN M+++ND+LKAI EWLN+QRQD  A   EVVRQLQ IPELS +
Sbjct: 66  KRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQRQDASARLVEVVRQLQRIPELSRY 125

Query: 126 DRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA 165
           DR+  MQILMCNV+DMKAF ++L+ELKLDYCT+I +D+A
Sbjct: 126 DRVRSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA 164

BLAST of PI0021914 vs. NCBI nr
Match: KAA0048374.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 166.8 bits (421), Expect = 1.6e-37
Identity = 87/162 (53.70%), Postives = 120/162 (74.07%), Query Frame = 0

Query: 2   GARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIG 61
           G RA++F DVGSN    Y+ F A+  ++ +   MYS+GL+MSP+++MGT+  R SEGR  
Sbjct: 113 GGRAESFADVGSNDPTGYDAFAANAASDTDFQPMYSRGLNMSPDELMGTRTARVSEGRYV 172

Query: 62  SSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIPE 121
           SSGSK+KRGG T+++ +I+R A++Y N+QL  IAEW  LQRQD   +R EVVRQL+ IPE
Sbjct: 173 SSGSKQKRGGSTIDSGDILRTAIEYGNEQLNRIAEWHVLQRQDATQTRQEVVRQLEAIPE 232

Query: 122 LSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDS 164
           L+  DR  LM+IL+ NVNDMKAF EV + +K  YC++ILE++
Sbjct: 233 LTLMDRCRLMRILIHNVNDMKAFLEVPDNMK-PYCSIILEEN 273

BLAST of PI0021914 vs. NCBI nr
Match: KAA0048280.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 165.2 bits (417), Expect = 4.6e-37
Identity = 85/162 (52.47%), Postives = 116/162 (71.60%), Query Frame = 0

Query: 2   GARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIG 61
           G RA++F D+GSN    Y+ F ADD ++ + L MYS GL+MSP+D+M T+  R SE R  
Sbjct: 111 GGRAESFADIGSNDPAGYDAFAADDVSDTDFLPMYSPGLNMSPDDLMETRTARVSERRNV 170

Query: 62  SSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIPE 121
           SSGSKRKR G   ++ +I+R AM+Y N+QL  IAEW  LQRQD   +R E+VRQL+ IPE
Sbjct: 171 SSGSKRKRSGHATDSGDIVRTAMEYGNEQLHRIAEWPILQRQDATETRQEIVRQLEVIPE 230

Query: 122 LSTHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDS 164
           L+  DR  LM+I+M NV+DMKAF EV + +K  YC++IL+++
Sbjct: 231 LTLMDRCRLMRIIMRNVDDMKAFLEVPDNMKYPYCSIILQEN 272

BLAST of PI0021914 vs. NCBI nr
Match: TYK11924.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 163.3 bits (412), Expect = 1.8e-36
Identity = 89/151 (58.94%), Postives = 110/151 (72.85%), Query Frame = 0

Query: 1   MGARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRI 60
           MG R K FVDVGSNV   YEGF  D  N++EI  MYS+GLDMS   I GT+   ++E R 
Sbjct: 1   MGGRTKIFVDVGSNVPRGYEGFHVDYENDMEIPTMYSKGLDMSTYYIKGTRFGHTAEDRA 60

Query: 61  GSSGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIP 120
           G S SK+K+GGQ++ET+EIIRN M+YANDQLKAIAEW N+Q QD   +R E VRQLQGI 
Sbjct: 61  GLSESKKKKGGQSIETVEIIRNVMEYANDQLKAIAEWPNVQCQDASTTRFEFVRQLQGIL 120

Query: 121 ELSTHDRMHLMQILMCNVNDMKAFFEVLEEL 152
           ELS  D+ H + +LM NVNDMKA  +V +++
Sbjct: 121 ELSRLDKAHCICLLMHNVNDMKASLDVSDDM 151

BLAST of PI0021914 vs. NCBI nr
Match: KAA0065601.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.2 bits (404), Expect = 1.5e-35
Identity = 92/162 (56.79%), Postives = 114/162 (70.37%), Query Frame = 0

Query: 3   ARAKTFVDVGSNVLGRYEGFPADDGNNIEILMMYSQGLDMSPNDIMGTQPDRSSEGRIGS 62
           A  +TFVDV SNV   YEGFPA+DGN+ EI M+Y                   SEGR  S
Sbjct: 10  ACVETFVDVRSNVFEVYEGFPANDGNDSEIPMIYG----------------HLSEGRNAS 69

Query: 63  SGSKRKRGGQTVETMEIIRNAMDYANDQLKAIAEWLNLQRQDERASRAEVVRQLQGIPEL 122
           S SKRK G QT ET++II NA++Y N QLKAIA+  N+QRQ + ASRAEV+ QLQGIP+L
Sbjct: 70  SRSKRKWGDQTTETVKIICNAIEYTNGQLKAIAKRSNVQRQADDASRAEVMSQLQGIPKL 129

Query: 123 STHDRMHLMQILMCNVNDMKAFFEVLEELKLDYCTVILEDSA 165
           ST DR+ L+ I+M NV++M+AF EV +ELKLDYCT +LED+A
Sbjct: 130 STRDRVRLLWIIMHNVHNMRAFLEVPDELKLDYCTTMLEDNA 155

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V4691.3e-5671.07Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TZA57.7e-3853.70Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TYQ62.2e-3752.47Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CL798.5e-3758.94Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VIQ27.2e-3656.79Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
Match NameE-valueIdentityDescription
KAA0060529.12.6e-5671.07retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p... [more]
KAA0048374.11.6e-3753.70retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon p... [more]
KAA0048280.14.6e-3752.47retrotransposon protein [Cucumis melo var. makuwa][more]
TYK11924.11.8e-3658.94retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0065601.11.5e-3556.79retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0021914.1PI0021914.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane