PI0021879 (gene) Melon (PI 482460) v1

Overview


Name	PI0021879
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Gag/pol protein
Location	chr05: 9575808 .. 9576269 (+)
RNA-Seq Expression	PI0021879
Synteny	PI0021879

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATTGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTATTCGAAATGCATCCCAGACCGTCAGGGATGCATATGATCGCTGGACAAAGGTTAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTATTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATTCGGCACGAGACTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGATCATTGACGAGCAAAGTTAG

mRNA sequence

ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATTGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTATTCGAAATGCATCCCAGACCGTCAGGGATGCATATGATCGCTGGACAAAGGTTAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTATTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATTCGGCACGAGACTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGATCATTGACGAGCAAAGTTAG

Coding sequence (CDS)

ATGTCTTCCTCAATTATAGCACTGCTTAAAAATGAAAAATTAACCGGTGATAATTATGCGACGTGGAAATTGAACCTGAATATGATTCTTGTAATCGATGATCTACGCTTCGTCTTAATGGAGGAATGTCCTCCTTCCCCTATTCGAAATGCATCCCAGACCGTCAGGGATGCATATGATCGCTGGACAAAGGTTAATGAAAAGGCCCGAGTCTACATCTTGGCCAGTATGTCTGACGTATTGAGCAAGAAACATGAGTCCATGGTCACTGCACGTCAGATCATGGACTCCCTCCAGGAGATGTTTGGACAACCGTCCATTCAAATTCGGCACGAGACTATTAAATACGTTTATAATGCCCGTATGAAGGAAGGCCAATCTGTTAGAGAACATGTTCTCGACATGATGGTCCAATTCAACGTGGCAGAAACGAACGGGGCGATCATTGACGAGCAAAGTTAG

Protein sequence

MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYDRWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHETIKYVYNARMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS

Homology

[Close]

BLAST of PI0021879 vs. ExPASy TrEMBL
Match: A0A5D3D0D9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 6.0e-61
Identity = 121/153 (79.08%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYD 60
           MSSSIIALLK ++LTG+NYATWK  LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHETIKYVYNA 120
            WTK N+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ E IKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS 154
           RMKEGQSVREHVL M+V FNVAE N AI DE+S
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKS 153

[Close]

BLAST of PI0021879 vs. ExPASy TrEMBL
Match: A0A5A7VA67 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00110 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 6.0e-61
Identity = 121/153 (79.08%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYD 60
           MSSSIIALLK ++LTG+NYATWK  LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHETIKYVYNA 120
            WTK N+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ E IKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS 154
           RMKEGQSVREHVL M+V FNVAE N AI DE+S
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKS 153

[Close]

BLAST of PI0021879 vs. ExPASy TrEMBL
Match: A0A5D3BM47 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00040 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.1e-57
Identity = 117/153 (76.47%), Postives = 133/153 (86.93%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYD 60
           MSSSIIALLK E LTG+NYA WK  LNMILVI DLRF+LMEECPP P +NAS+++RDAY+
Sbjct: 1   MSSSIIALLKKEHLTGENYAMWKSKLNMILVIVDLRFILMEECPPFPTQNASESIRDAYN 60

Query: 61  RWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHETIKYVYNA 120
           R TK N+KA +YILASMSD+LSKKHE MVTARQIMDS +E+F QPSIQI+ E IKYVYNA
Sbjct: 61  RRTKANDKACLYILASMSDILSKKHEIMVTARQIMDSHKELFRQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS 154
            MKEGQSVREH LDM+V FNVAE NGA+IDE+S
Sbjct: 121 HMKEGQSVREHCLDMIVNFNVAEMNGAVIDEKS 153

[Close]

BLAST of PI0021879 vs. ExPASy TrEMBL
Match: A0A5D3DQJ2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G00330 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.6e-56
Identity = 112/153 (73.20%), Postives = 129/153 (84.31%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYD 60
           MSSSIIALLK ++LTG NY TWK  LNMILVI DLR +LME+CPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGKNYVTWKSKLNMILVIADLRVILMEDCPPFPSQNASQSVKDAYD 60

Query: 61  RWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHETIKYVYNA 120
            WTK N+KAR+YIL SM D+LSKKHE MVTARQIMDS++EMFGQPSIQI+ E IKYVYN 
Sbjct: 61  CWTKTNDKARLYILVSMFDILSKKHEIMVTARQIMDSIREMFGQPSIQIKQEAIKYVYNV 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS 154
            MKE QSVREHVLDM+V FN+AE N  + DE+S
Sbjct: 121 CMKEDQSVREHVLDMIVNFNIAEMNRVVFDEKS 153

[Close]

BLAST of PI0021879 vs. ExPASy TrEMBL
Match: A0A5D3DIM3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1359G00090 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.3e-55
Identity = 113/152 (74.34%), Postives = 132/152 (86.84%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYD 60
           MSSSIIALLK ++LTG+NYATWKL LNMILVI DLRFVL+EECPP P +NASQ+V+D YD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKLKLNMILVITDLRFVLIEECPPFPSQNASQSVKDGYD 60

Query: 61  RWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHETIKYVYNA 120
            WTK N+KAR+YILASMS++LSKKH  MVTARQIM SL+EMFGQ SIQI+ E IKYVYNA
Sbjct: 61  CWTKANDKARLYILASMSNILSKKHGIMVTARQIMKSLKEMFGQSSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAIIDEQ 153
           RMKEGQ VRE VL+M+V FN+A+ N A+ DE+
Sbjct: 121 RMKEGQYVRELVLNMIVNFNLAQMNEAVFDEK 152

[Close]

BLAST of PI0021879 vs. NCBI nr
Match: KAA0063887.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 243.4 bits (620), Expect = 1.2e-60
Identity = 121/153 (79.08%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYD 60
           MSSSIIALLK ++LTG+NYATWK  LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHETIKYVYNA 120
            WTK N+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ E IKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS 154
           RMKEGQSVREHVL M+V FNVAE N AI DE+S
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKS 153

[Close]

BLAST of PI0021879 vs. NCBI nr
Match: TYK15919.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 243.4 bits (620), Expect = 1.2e-60
Identity = 121/153 (79.08%), Postives = 136/153 (88.89%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYD 60
           MSSSIIALLK ++LTG+NYATWK  LNMILVI DLRFVLMEECPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGENYATWKSKLNMILVIADLRFVLMEECPPFPTQNASQSVKDAYD 60

Query: 61  RWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHETIKYVYNA 120
            WTK N+KA +Y+LAS+SD+LSKKHE MVTARQIMDSL+EMFGQPSIQI+ E IKYVYNA
Sbjct: 61  HWTKANDKASLYMLASLSDILSKKHEIMVTARQIMDSLREMFGQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS 154
           RMKEGQSVREHVL M+V FNVAE N AI DE+S
Sbjct: 121 RMKEGQSVREHVLGMIVNFNVAEMNKAIFDEKS 153

[Close]

BLAST of PI0021879 vs. NCBI nr
Match: TYK00843.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 232.6 bits (592), Expect = 2.2e-57
Identity = 117/153 (76.47%), Postives = 133/153 (86.93%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYD 60
           MSSSIIALLK E LTG+NYA WK  LNMILVI DLRF+LMEECPP P +NAS+++RDAY+
Sbjct: 1   MSSSIIALLKKEHLTGENYAMWKSKLNMILVIVDLRFILMEECPPFPTQNASESIRDAYN 60

Query: 61  RWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHETIKYVYNA 120
           R TK N+KA +YILASMSD+LSKKHE MVTARQIMDS +E+F QPSIQI+ E IKYVYNA
Sbjct: 61  RRTKANDKACLYILASMSDILSKKHEIMVTARQIMDSHKELFRQPSIQIKQEAIKYVYNA 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS 154
            MKEGQSVREH LDM+V FNVAE NGA+IDE+S
Sbjct: 121 HMKEGQSVREHCLDMIVNFNVAEMNGAVIDEKS 153

[Close]

BLAST of PI0021879 vs. NCBI nr
Match: KAA0040193.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK25936.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 228.0 bits (580), Expect = 5.4e-56
Identity = 112/153 (73.20%), Postives = 129/153 (84.31%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYD 60
           MSSSIIALLK ++LTG NY TWK  LNMILVI DLR +LME+CPP P +NASQ+V+DAYD
Sbjct: 1   MSSSIIALLKKDQLTGKNYVTWKSKLNMILVIADLRVILMEDCPPFPSQNASQSVKDAYD 60

Query: 61  RWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHETIKYVYNA 120
            WTK N+KAR+YIL SM D+LSKKHE MVTARQIMDS++EMFGQPSIQI+ E IKYVYN 
Sbjct: 61  CWTKTNDKARLYILVSMFDILSKKHEIMVTARQIMDSIREMFGQPSIQIKQEAIKYVYNV 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS 154
            MKE QSVREHVLDM+V FN+AE N  + DE+S
Sbjct: 121 CMKEDQSVREHVLDMIVNFNIAEMNRVVFDEKS 153

[Close]

BLAST of PI0021879 vs. NCBI nr
Match: XP_022158197.1 (uncharacterized protein LOC111024734 [Momordica charantia])

HSP 1 Score: 225.7 bits (574), Expect = 2.7e-55
Identity = 108/153 (70.59%), Postives = 130/153 (84.97%), Query Frame = 0


Query: 1   MSSSIIALLKNEKLTGDNYATWKLNLNMILVIDDLRFVLMEECPPSPIRNASQTVRDAYD 60
           MS+SIIALL  +KL G+NY  WK NLN ILVIDDLRFVL E+CP +P+ NA+  VR+AYD
Sbjct: 1   MSASIIALLAAQKLNGENYRQWKSNLNTILVIDDLRFVLQEDCPQAPVSNATVAVRNAYD 60

Query: 61  RWTKVNEKARVYILASMSDVLSKKHESMVTARQIMDSLQEMFGQPSIQIRHETIKYVYNA 120
           RW K N+KA+VYILAS+SDVL+KKHE  VT ++IMDSLQ MFGQPS+Q RHE +K+VYN+
Sbjct: 61  RWIKSNDKAKVYILASISDVLAKKHEDTVTTKEIMDSLQSMFGQPSLQARHEALKFVYNS 120

Query: 121 RMKEGQSVREHVLDMMVQFNVAETNGAIIDEQS 154
           RMKEG SVREHVL++MV FNVAE+NG +IDEQS
Sbjct: 121 RMKEGSSVREHVLNLMVHFNVAESNGIVIDEQS 153

The following BLAST results are available for this feature:

BLAST of PI0021879 vs.


Match Name	E-value	Identity	Description

BLAST of PI0021879 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D0D9	6.0e-61	79.08	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00210...	[more]
A0A5A7VA67	6.0e-61	79.08	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G0011...	[more]
A0A5D3BM47	1.1e-57	76.47	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G0004...	[more]
A0A5D3DQJ2	2.6e-56	73.20	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold190G0033...	[more]
A0A5D3DIM3	1.3e-55	74.34	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1359G000...	[more]

BLAST of PI0021879 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063887.1	1.2e-60	79.08	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15919.1	1.2e-60	79.08	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK00843.1	2.2e-57	76.47	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0040193.1	5.4e-56	73.20	gag/pol protein [Cucumis melo var. makuwa] >TYK25936.1 gag/pol protein [Cucumis ...	[more]
XP_022158197.1	2.7e-55	70.59	uncharacterized protein LOC111024734 [Momordica charantia]	[more]

BLAST of PI0021879 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 62..151 e-value: 1.7E-9 score: 37.6
None	No IPR available	PANTHER	PTHR35317	OS04G0629600 PROTEIN	coord: 18..153
None	No IPR available	PANTHER	PTHR35317:SF8	POLYPROTEIN-LIKE PROTEIN	coord: 18..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021879.1	PI0021879.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding