PI0021814 (gene) Melon (PI 482460) v1

Overview


Name	PI0021814
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Unknown protein
Location	chr06: 17640964 .. 17641185 (-)
RNA-Seq Expression	PI0021814
Synteny	PI0021814

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAACAGAGCAGGAGGAGCAGATAGAGAACAGTCCTCAAAAGCGGGGAAAGGGAAGTGAAAAAGGGGGATTGAACCGGGCTGGACGAGGTCTTGTGATCGCGATAACCAAGAGAATGAAGCTCGAGGCGATGCCCCTGAAAGCTTTTTTTTTTCTGCAAAACCCAGGAGAGAAAATGAAAGGGGATATGCAGTTGCAGGCAGAGCGTGAAGGATGTTGA

mRNA sequence

ATGGAAACAGAGCAGGAGGAGCAGATAGAGAACAGTCCTCAAAAGCGGGGAAAGGGAAGTGAAAAAGGGGGATTGAACCGGGCTGGACGAGGTCTTGTGATCGCGATAACCAAGAGAATGAAGCTCGAGGCGATGCCCCTGAAAGCTTTTTTTTTTCTGCAAAACCCAGGAGAGAAAATGAAAGGGGATATGCAGTTGCAGGCAGAGCGTGAAGGATGTTGA

Coding sequence (CDS)

ATGGAAACAGAGCAGGAGGAGCAGATAGAGAACAGTCCTCAAAAGCGGGGAAAGGGAAGTGAAAAAGGGGGATTGAACCGGGCTGGACGAGGTCTTGTGATCGCGATAACCAAGAGAATGAAGCTCGAGGCGATGCCCCTGAAAGCTTTTTTTTTTCTGCAAAACCCAGGAGAGAAAATGAAAGGGGATATGCAGTTGCAGGCAGAGCGTGAAGGATGTTGA

Protein sequence

METEQEEQIENSPQKRGKGSEKGGLNRAGRGLVIAITKRMKLEAMPLKAFFFLQNPGEKMKGDMQLQAEREGC

Homology

[Close]

BLAST of PI0021814 vs. ExPASy TrEMBL
Match: A0A0A0LCC9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G258130 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.8e-24
Identity = 64/72 (88.89%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  METEQEEQIENSPQKRGKGSEKGGLNRAGRGLVIAITKRMKLEAMPLKAFFFLQNPGEKM 60
          METEQ EQIENSPQKRGKGSE+GGLNR GRGLVI ITKRMKLEA PLKA FFLQNP EKM
Sbjct: 1  METEQREQIENSPQKRGKGSERGGLNRGGRGLVITITKRMKLEATPLKA-FFLQNPREKM 60

Query: 61 KGDMQLQAEREG 73
          KGDMQLQ EREG
Sbjct: 61 KGDMQLQGEREG 71

[Close]

BLAST of PI0021814 vs. NCBI nr
Match: KGN57711.1 (hypothetical protein Csa_011116 [Cucumis sativus])

HSP 1 Score: 119.8 bits (299), Expect = 9.9e-24
Identity = 64/72 (88.89%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 1  METEQEEQIENSPQKRGKGSEKGGLNRAGRGLVIAITKRMKLEAMPLKAFFFLQNPGEKM 60
          METEQ EQIENSPQKRGKGSE+GGLNR GRGLVI ITKRMKLEA PLKA FFLQNP EKM
Sbjct: 1  METEQREQIENSPQKRGKGSERGGLNRGGRGLVITITKRMKLEATPLKA-FFLQNPREKM 60

Query: 61 KGDMQLQAEREG 73
          KGDMQLQ EREG
Sbjct: 61 KGDMQLQGEREG 71

The following BLAST results are available for this feature:

BLAST of PI0021814 vs.


Match Name	E-value	Identity	Description

BLAST of PI0021814 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCC9	4.8e-24	88.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G258130 PE=4 SV=1	[more]

BLAST of PI0021814 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN57711.1	9.9e-24	88.89	hypothetical protein Csa_011116 [Cucumis sativus]	[more]

BLAST of PI0021814 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..29

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021814.1	PI0021814.1	mRNA