PI0021772 (gene) Melon (PI 482460) v1

Overview


Name	PI0021772
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Retrotransposon protein
Location	chr03: 24289838 .. 24295304 (-)
RNA-Seq Expression	PI0021772
Synteny	PI0021772

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTGGTTTAATCTGTTCCAAAATAAATCCCTCTCATAAACCGTCTGATAACCCCCCTCAACCCCTCTCTCAGCCGACTGTAATATGTCTCCAATCCCTCTTTAATCTGTTCCAAAATAAATCCGTCGAAAATCATCCTCATCCACTCGTCTTCTTCCTCCTTTCCGTTCCATTTTCGTTTGTTGTTCAAAGCTAAGCAACTTTAACGTTTTTCCCCATTTTTCCTCTCCGAATCTACATCCATTTTGCTCTTTACGTCTTCCATCCTCGTTGCATTTTCGTCCCCGAAATCTCATCTCCGTCATTGCAAACCATGTCCTTTTCTTCTCCTAATCTCAGATCCTTCAACCCCTTTTCCTTTCGTTGATGGCTGTGTTTCGATGTTGCCTTCGAAATGGTTCTCCTTTCTCTCTCTATGGTTTCGTTGACCGATTGCGTTCCACGCGTTGCCTCCGAAACTTTTCGCCTTCCTCTCTCTGTTTCCATGCATGGCATTGCTGTAACACTTGCCACTCTGACTTCCCCTTGTCGCTTCGACTTCCACTTAGTCGCGCTACACCCAAATACCATAAATTGAATATTGCTACAGCGAAAGAGTTCGGTAGGGGCATCGACGGAGCACAACAGGGGTGACCAGTCTTTTCTATGGTTTGTACACAAACCCTACAAGCCGATGATGAGTTCCTCGTGTGGTCAATCTCTGAATCATTTTTCATTGCTTTTTGTTTGCATATTTGTGTATTTGTATTCTGTTTTTAGACACATTTATTTGGTTTTTCTATGTTTCCATTATATGTTATGAATCATGGTCTTTGTTGTGGCAAAAATTTTTCTTCTTCTCAGATGTCTTGTGCAGATGAAAATGTACTATTCCATCATATACGTTATGTTCTGCAAATTTGGCTGAATTTCGTTCATATTAATTTTGAAAAATATGGTTATACTTGAAATCTCTTCGTTTGGTTATGATGTATTCTCTCGGAACTGTTTGTTTTGGTTTCATTGTAGCTTTTTTCTTGTTTTTTTTCCTTCCAATCTTGTTATTCCCTATTACATTGCAACTTTTTTACTTTGTTGATGTTTGCTCATAATTATTTCACCTCCACATTTCATCTGTGCTTAGGTCCATATTTTAAAACCTATTGTGTACTTTTGTGCTGTTGTATAGAGTGATGTCTTGCATACCTACTTGCATAATTTTTCTATTAGGTCTTCAAAACTCATGTTTGACTATCATTCTTCTTCTGATATGGGTCAATTCCTTCATTTCATCTGATCTTGGTTGTCACAGTGATGGCCATATCCCCTAGTTTTTGGGATACTTGTTGTTTACTGCTTGCTTCTCTAATTTATTGTCATCATCCCTTCACTATAAATATGACCCTTTTTCTCATTCCATTGCATCCTCGGTCTTTCTGCATTTTCCTTCTGTTTTTACCTCTTTGGTATGTTTAACATTCTTTTCTATCATGTTTCTTTGAATTATTTATCACATTTTCTAATATGTTTTATCCTTCTATTTTTACGTCTTTCGTATGTTTAACATGCTTCTATATCATATTTGCTTGAATTATTTATCACACTTTCTGATATGTTTTATCCCTATGTTTTATCCCTCTGTTTTTACCTCTTTCCTATGTTTACCATTCATCATCTAAATGTCCACTTGCATTATTCTCTTAAATATCCTTTTGCATTGTACTTTGAAAGCATGTGTATGAAGAATTCTTCATACACATGCTTCAATGACGAATAACATGTGTATGAAGAATTCTTCATACGCATGTTATTCGTCATTGATTGCTTTGCATTGCATGTGTGAGGTCACTTTTTTCAATACATGAAATTCTACTAAAAGGAAATTCTAGTTCAATGACCTTGAACGAATTTCATAACTTTGAGGCTACTTTTTTTTCTTACATTATTTACTGATTCTTATGTATTTACTCGTACAGGTTTATAGAATTGTTATACGACCAATTTCGATTAAGGCAACGATATGTTATCACAACTTTTGGTACTTTTTGTTTCTTAATTTGTAATTTTAGTGGATAGAGTTGTAAATTAATTTTTATCATTCATCGTTTTAGGTTCTTCCAGTTAAACATTTTCGTTTCCGAGGTATACGGGTTATTCTTCATGTAATTTTTTTAGTTCCTTCATTTCACATTTTTTTGCTTTCAGTATTGTAATACTTTCCTTCCTTCCTTGCATAATTTTTATTTGTTTCATAACAAGTTTCGGTTCTGTAATAATTTTTTTAGTTCCTTCCTTCCTTTCATAATTTTTCATTTTTGTACACAAATTGTTGTCCTAAAATAATTCTTGTATTTGGACTTTATATGAACTCAATTGTTTATTTAATACAATATTTCATACTATGTTTCATTTATTATGGATTCACCAAGCGCTTGTTTATGATATGTATAGTTTAGAAAAAAATTATTTTCTCTATTTTAGCATAAAGTAATTCTTACCCATACGTATACCTAAGTTAGTAAACCATTATCAAACTTCAATATCGTAGTGTTCAACATTTGGTCGGGATAGTGGTACGTTTAGAAAAAAAATCGGAGAATAGATAGACAAAATGGTAGAATTACGAGTATGGTTTAGGTCGAAACAACTGTAAGAAATTTAAGTACACAACAATCTTCAAACGTTTTAAATGTGTGTCATCTTGATTTTTTCAAACATTTTTTCACCTAATCAATTTAAAAAAAAAAACAACTTGTAATGACTTTATTCAAAATTGTAAATTTTTTTTCTAACTCGAGCGATTCCATATACGATACATATTGTTTATTGTTGAAACTTCAAAACTAATATGCACTTAGGACAGCTAATTGGGGACGAGAGTGACAAATAGAAGAGGGAACGAGGGAGTTAACGGTTGTAGGGGTCGAACGTGACATATTTTTATTTAGAAATTGGAATAGATAGGTATTTTTCTAATAAAACTTCAGACGATTTAAATGAGGAACAATGGGAGAAATAAATCATTTACTGCTCTTTAGAAAAGTTGGAGAGATGTGACAATTACAATTGCCTTACATGTCTTACATGAAAATAAGAATTCTACTTTTATAACAATTTGTCTTCGAAGGAAAAAAAAAGGGGAATGTTGTAACTTTCGTTACCCAGATATAAACACTTCTTTTCCAAAATCATAATTTTAGTGAGAAGCTATAAAATATGTCTTATGTCACATTATGCTTTATTTTTAAAAAAAGAACGAATCATTATAAACGTTGATTTGCTTTTGTATCAGTTTTTTTTTCAAAACTTTAAAGAAGCATTTATTTCAACATGGTATCACTATAGAATTTCTGATGGATGAACAAGACATTAGGTCCCTACTTACCGTGTTCATAACATCCCAATGTCAGTTACTACTGATGTTGGAGTTGTTCATGAACGACAACAAGAGGATAACCCATGTACCTTCCGACACTAGGTATATAGTTCGAAAGTTAGCGTACTTCTGCATAATCCAAAAGTCCGACCTAATATGTCGTCAAAGTACGAGAATGGAACGAAGATGTTTTGCCATTCTATGTCACTTACTTAGGACCATTGCTGGATTAGCGTCGACAAAAATCGTTGATGTCGAGGAGATGGTGGCAATGTTCCTCCATGTACTGGCACGGGACGTGAAGAATTGAATGATTCAAAGGGAGTTCTTGTGGACCAGTGAGACAATTTTACGGCATTTTAACATAGTTCTATTGGCAGTGTTACGCCTGCACGTCGAGTTGTTGAAGAAACCATAACCCGTGACAAACGGTTGCACAAATCCACGATGGAGGTGGTTTGAGGTACGATTTTTATAGACCAAGTTCGTACTTCAACGAATTCAAATTGCGATCTGCTGATTCACCATTGTTTATATAATGCAGAATTGCCTTGGTGCATTAGATGACACATACATCAAGGTGAACGTGATGACAAGTGATCGATCGAGATATAAAACACGAAAGGGTGAAGTTGCTACAAAGGTCCTTGGAGTATGTGATATGAAAGGAGATTTAGTTTTCGTATTAGCCGTTGGGAAGGATCCACTGCACACTCGCGCATCCTTCGAGATGTCATTTCAAGGTCGAACGACCTAAAGGTGCTGAAGGGTAACTACGTACATATTTTCCTTTGAAGATTTTCCCTCATGAGTTGCGACATTTAAAGTGTGTGATATCCTCACAGGGTATTACTACCTATGCGATGTCGGGTACCCTAACGCTGAGGGTTTTCTGACTCCATACAGAAGGCGAAGATATCACCTGCAGGAGTGGTGTGAGAGGGAAATGCATCTTTAACAGTGAAAAAATTCTTCAACATGAAACATTCTTCTGCATGGAATGTTATTGAAAAAGCTTCTGGTTTGTTGAAGGGTCGATGCGCAATTCTTCGAGGAAAGTCCTATTACCCCGTCGAAGTCAAAACTAGCATGATACTGACATGTTGTCTACTGCACAACCTCATAAATAGAGAGATGATGAACACTTATATACCAGATGAAGTAGATGAGGGTGATTTGACCTTTGCGACAACTGTAGGTGACAATATTCACTACATAAATACCTCAAACGAATGGAGTCAATGAAGGGACGAGCTAGCCGAAGAAATGTTCAGTGATTGAGAGTTGCGTAATCAATAGCACCTAGTGTAGCAGTAGTACAGTGTTTACATTTAGTTGTTAATGATGCCCGATTTACTTATTTTTCCATATGCTTTAAATTTCTTTTATGTTTTAATACACTGCCAATTCACTTGAAGCACAATATATTATGTTTTTCTGTGTTTTTTCCTTACGCAACTCATTTGACTAATATGTTCGCATTTACTTTCTAGTATGACAAGTTCTTCAAGGACCCCTAAGCACTTGTGGACGAAAGAGGAGGCCACCTTCGTTGAGTGCTTGGTGGAATTGGTCTCCGTCGGTGGCTGAAGGTCCGACAACGGGACATTTAGACCCGAGTACCATAGTCAACTGCAAAGAATGATGGTTGAGAAGATGCAAGGACGTAACATATATAGAGGTTTCGACCATTGATTGTCGGATAAAGATGCTGAAGAGAATGGTCTAGGCTATAGCAGAAATGCGGGGTCCATCGTATAGTGGGTTCGATTGGAACAATGAACTCAAGTGCATCATTATGGAGAAGCAATTGTTCGACAATTGGGTGAAGGTACGTTATTCATTCTATCAACCATTATTCGTTTCTTATAGAAAATAAACTAACAAGTTACTGCAACACTTGAACAGAGTCATCCTGCAGCTAAGGACCTCCTAAACAGATCCTTTCTCCATTACGATGACCTGTGCTACGTATTTGGAAAAGATCATGCAACCGAAGGGCGCGCTGAAATATTCATCGATATGGGATCGAATGTGCCCGGAGGGTACGAAGATTTCCCGTTGACGATGACATCGACATGGAGATCCCTTCAATGTATAGTCAAGGACTAG

mRNA sequence

GTTTGGTTTAATCTGTTCCAAAATAAATCCCTCTCATAAACCGTCTGATAACCCCCCTCAACCCCTCTCTCAGCCGACTGTAATATGTCTCCAATCCCTCTTTAATCTGTTCCAAAATAAATCCGTCGAAAATCATCCTCATCCACTCGTCTTCTTCCTCCTTTCCGTTCCATTTTCGTTTGTTGTTCAAAGCTAAGCAACTTTAACGTTTTTCCCCATTTTTCCTCTCCGAATCTACATCCATTTTGCTCTTTACGTCTTCCATCCTCGTTGCATTTTCGTCCCCGAAATCTCATCTCCGTCATTGCAAACCATGTCCTTTTCTTCTCCTAATCTCAGATCCTTCAACCCCTTTTCCTTTCGTTGATGGCTGTGTTTCGATGTTGCCTTCGAAATGGTTCTCCTTTCTCTCTCTATGGTTTCGTTGACCGATTGCGTTCCACGCGTTGCCTCCGAAACTTTTCGCCTTCCTCTCTCTGTTTCCATGCATGGCATTGCTGTAACACTTGCCACTCTGACTTCCCCTTGTCGCTTCGACTTCCACTTAGTCGCGCTACACCCAAATACCATAAATTGAATATTGCTACAGCGAAAGAGTTCGGTAGGGGCATCGACGGAGCACAACAGGGGTGACCAGTCTTTTCTATGGTTTATAGAATTGTTATACGACCAATTTCGATTAAGGCAACGATATGTTATCACAACTTTTGAATTTCTGATGGATGAACAAGACATTAGGTCCCTACTTACCGTGTTCATAACATCCCAATGTCAGTTACTACTGATGTTGGAGTTGTTCATGAACGACAACAAGAGGATAACCCATGTACCTTCCGACACTAGGACCATTGCTGGATTAGCGTCGACAAAAATCGTTGATGTCGAGGAGATGGTGGCAATTGTTACGCCTGCACGTCGAGTTGTTGAAGAAACCATAACCCGTGACAAACGGTTGCACAAATCCACGATGGAGGTGGCTATAGCAGAAATGCGGGGTCCATCGTATAGTGGGTTCGATTGGAACAATGAACTCAAGTGCATCATTATGGAGAAGCAATTGTTCGACAATTGGGTGAAGAGTCATCCTGCAGCTAAGGACCTCCTAAACAGATCCTTTCTCCATTACGATGACCTGTGCTACGTATTTGGAAAAGATCATGCAACCGAAGGGCGCGCTGAAATATTCATCGATATGGGATCGAATGTGCCCGGAGGGTACGAAGATTTCCCGTTGACGATGACATCGACATGGAGATCCCTTCAATGTATAGTCAAGGACTAG

Coding sequence (CDS)

ATGGATGAACAAGACATTAGGTCCCTACTTACCGTGTTCATAACATCCCAATGTCAGTTACTACTGATGTTGGAGTTGTTCATGAACGACAACAAGAGGATAACCCATGTACCTTCCGACACTAGGACCATTGCTGGATTAGCGTCGACAAAAATCGTTGATGTCGAGGAGATGGTGGCAATTGTTACGCCTGCACGTCGAGTTGTTGAAGAAACCATAACCCGTGACAAACGGTTGCACAAATCCACGATGGAGGTGGCTATAGCAGAAATGCGGGGTCCATCGTATAGTGGGTTCGATTGGAACAATGAACTCAAGTGCATCATTATGGAGAAGCAATTGTTCGACAATTGGGTGAAGAGTCATCCTGCAGCTAAGGACCTCCTAAACAGATCCTTTCTCCATTACGATGACCTGTGCTACGTATTTGGAAAAGATCATGCAACCGAAGGGCGCGCTGAAATATTCATCGATATGGGATCGAATGTGCCCGGAGGGTACGAAGATTTCCCGTTGACGATGACATCGACATGGAGATCCCTTCAATGTATAGTCAAGGACTAG

Protein sequence

MDEQDIRSLLTVFITSQCQLLLMLELFMNDNKRITHVPSDTRTIAGLASTKIVDVEEMVAIVTPARRVVEETITRDKRLHKSTMEVAIAEMRGPSYSGFDWNNELKCIIMEKQLFDNWVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFIDMGSNVPGGYEDFPLTMTSTWRSLQCIVKD

Homology

[Close]

BLAST of PI0021772 vs. ExPASy TrEMBL
Match: A0A5A7U098 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold466G00330 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 4.4e-29
Identity = 67/113 (59.29%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 58  MVAIVTPARRVVEETITRDKRLHKSTMEVAIAEMRGPSYSGFDWNNELKCIIMEKQLFDN 117
           M+A   P   +   TI    +L K  M  A+AEMRGP+ SGF WN+E KCI++EK+LFD+
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMK-RMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDD 110

Query: 118 WVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFIDMGSNVPGGYEDF 171
           WVKSHP AK LLN+SF+HYD+L YVFGKD AT GRAE F D+GSN P GY+ F
Sbjct: 111 WVKSHPMAKGLLNKSFVHYDELSYVFGKDRATGGRAESFTDIGSNDPAGYDAF 162

[Close]

BLAST of PI0021772 vs. ExPASy TrEMBL
Match: A0A5D3C1M0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1317G00570 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 5.7e-29
Identity = 67/111 (60.36%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 58  MVAIVTPARRVVEETITRDKRLHKSTMEVAIAEMRGPSYSGFDWNNELKCIIMEKQLFDN 117
           M+A   P   +   TI    +L K  M  A+AEMRGP+ SGF WN+E KCI++EK+LFD+
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMK-RMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDD 110

Query: 118 WVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFIDMGSNVPGGYE 169
           WVKSHPAAK LLN+SF+HYD+L YVFGKD AT GRAE F D+GSN P GY+
Sbjct: 111 WVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYD 160

[Close]

BLAST of PI0021772 vs. ExPASy TrEMBL
Match: A0A1S3CTN6 (uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 1.3e-28
Identity = 66/113 (58.41%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 58  MVAIVTPARRVVEETITRDKRLHKSTMEVAIAEMRGPSYSGFDWNNELKCIIMEKQLFDN 117
           M+A   P   +   TI    +L K  M  A+AEMRGP+ SGF WN+E KCI+ EK++FD+
Sbjct: 47  MMAFKIPGSNIHASTIDSRIKLMK-RMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDD 106

Query: 118 WVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFIDMGSNVPGGYEDF 171
           WVKSHP AK LLN+SF+HYD+L YVFGKD AT GRAE F D+GSN P GY+ F
Sbjct: 107 WVKSHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAF 158

[Close]

BLAST of PI0021772 vs. ExPASy TrEMBL
Match: A0A5A7TZA5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00090 PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 1.7e-28
Identity = 68/119 (57.14%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 58  MVAIVTPARRVVEETITRDKRLHKSTMEVAIAEMRGPSYSGFDWNNELKCIIMEKQLFDN 117
           M+A   P   V   TI    +L K  M  AI EMRGP+ SGF WN+E KCI+ EK++FD+
Sbjct: 22  MMAFKIPCSNVHASTIDSRIKLLK-RMFHAIGEMRGPTCSGFGWNDEQKCIVAEKEVFDD 81

Query: 118 WVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFIDMGSNVPGGYEDFPLTMTS 177
           WV+SHPAAK LLN+SF HYD+L YVF KDHAT GRAE F D+GSN P GY+ F     S
Sbjct: 82  WVRSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAAS 139

[Close]

BLAST of PI0021772 vs. ExPASy TrEMBL
Match: A0A5D3D831 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G001060 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 2.8e-28
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 0


Query: 87  AIAEMRGPSYSGFDWNNELKCIIMEKQLFDNWVKSHPAAKDLLNRSFLHYDDLCYVFGKD 146
           AIAEMRGP+ SGF WNNE KCIIMEK+LFDNWV+SHPAAK LLN+ F +YD+L YVF  D
Sbjct: 43  AIAEMRGPACSGFGWNNEEKCIIMEKELFDNWVRSHPAAKGLLNKPFSYYDELTYVFDSD 102

Query: 147 HATEGRAEIFIDMGSNVPGGYEDFPL 173
            AT+  AE F+DMGSN P GYE F +
Sbjct: 103 RATDRFAETFVDMGSNEPDGYEGFDM 128

[Close]

BLAST of PI0021772 vs. NCBI nr
Match: KAA0047075.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.9 bits (346), Expect = 9.0e-29
Identity = 67/113 (59.29%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 58  MVAIVTPARRVVEETITRDKRLHKSTMEVAIAEMRGPSYSGFDWNNELKCIIMEKQLFDN 117
           M+A   P   +   TI    +L K  M  A+AEMRGP+ SGF WN+E KCI++EK+LFD+
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMK-RMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDD 110

Query: 118 WVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFIDMGSNVPGGYEDF 171
           WVKSHP AK LLN+SF+HYD+L YVFGKD AT GRAE F D+GSN P GY+ F
Sbjct: 111 WVKSHPMAKGLLNKSFVHYDELSYVFGKDRATGGRAESFTDIGSNDPAGYDAF 162

[Close]

BLAST of PI0021772 vs. NCBI nr
Match: TYK05082.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 137.5 bits (345), Expect = 1.2e-28
Identity = 67/111 (60.36%), Postives = 82/111 (73.87%), Query Frame = 0


Query: 58  MVAIVTPARRVVEETITRDKRLHKSTMEVAIAEMRGPSYSGFDWNNELKCIIMEKQLFDN 117
           M+A   P   +   TI    +L K  M  A+AEMRGP+ SGF WN+E KCI++EK+LFD+
Sbjct: 51  MMAFKIPGCNIHASTIDSRIKLMK-RMFHALAEMRGPNCSGFGWNDEKKCIVVEKELFDD 110

Query: 118 WVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFIDMGSNVPGGYE 169
           WVKSHPAAK LLN+SF+HYD+L YVFGKD AT GRAE F D+GSN P GY+
Sbjct: 111 WVKSHPAAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYD 160

[Close]

BLAST of PI0021772 vs. NCBI nr
Match: XP_008466949.1 (PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo])

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-28
Identity = 66/113 (58.41%), Postives = 81/113 (71.68%), Query Frame = 0


Query: 58  MVAIVTPARRVVEETITRDKRLHKSTMEVAIAEMRGPSYSGFDWNNELKCIIMEKQLFDN 117
           M+A   P   +   TI    +L K  M  A+AEMRGP+ SGF WN+E KCI+ EK++FD+
Sbjct: 47  MMAFKIPGSNIHASTIDSRIKLMK-RMFHALAEMRGPNCSGFGWNDEKKCIVAEKEVFDD 106

Query: 118 WVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFIDMGSNVPGGYEDF 171
           WVKSHP AK LLN+SF+HYD+L YVFGKD AT GRAE F D+GSN P GY+ F
Sbjct: 107 WVKSHPTAKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSNDPPGYDAF 158

[Close]

BLAST of PI0021772 vs. NCBI nr
Match: KAA0048374.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.0 bits (341), Expect = 3.4e-28
Identity = 68/119 (57.14%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 58  MVAIVTPARRVVEETITRDKRLHKSTMEVAIAEMRGPSYSGFDWNNELKCIIMEKQLFDN 117
           M+A   P   V   TI    +L K  M  AI EMRGP+ SGF WN+E KCI+ EK++FD+
Sbjct: 22  MMAFKIPCSNVHASTIDSRIKLLK-RMFHAIGEMRGPTCSGFGWNDEQKCIVAEKEVFDD 81

Query: 118 WVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFIDMGSNVPGGYEDFPLTMTS 177
           WV+SHPAAK LLN+SF HYD+L YVF KDHAT GRAE F D+GSN P GY+ F     S
Sbjct: 82  WVRSHPAAKGLLNKSFPHYDELSYVFSKDHATGGRAESFADVGSNDPTGYDAFAANAAS 139

[Close]

BLAST of PI0021772 vs. NCBI nr
Match: KAA0041550.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK19704.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 5.8e-28
Identity = 60/86 (69.77%), Postives = 69/86 (80.23%), Query Frame = 0


Query: 87  AIAEMRGPSYSGFDWNNELKCIIMEKQLFDNWVKSHPAAKDLLNRSFLHYDDLCYVFGKD 146
           AIAEMRGP+ SGF WNNE KCIIMEK+LFDNWV+SHPAAK LLN+ F +YD+L YVF  D
Sbjct: 43  AIAEMRGPACSGFGWNNEEKCIIMEKELFDNWVRSHPAAKGLLNKPFSYYDELTYVFDSD 102

Query: 147 HATEGRAEIFIDMGSNVPGGYEDFPL 173
            AT+  AE F+DMGSN P GYE F +
Sbjct: 103 RATDRFAETFVDMGSNEPDGYEGFDM 128

[Close]

BLAST of PI0021772 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 7.4e-05
Identity = 16/61 (26.23%), Postives = 32/61 (52.46%), Query Frame = 0


Query: 98  GFDWNNELKCIIMEKQLFDNWVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFI 157
           GF W+NE + +  +  ++ +++K+H  A+  + R   +Y DLC + G     E    + +
Sbjct: 259 GFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCGDSGIEENECFVAM 318

Query: 158 D 159
           D
Sbjct: 319 D 319

[Close]

BLAST of PI0021772 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 45.1 bits (105), Expect = 7.4e-05
Identity = 16/61 (26.23%), Postives = 32/61 (52.46%), Query Frame = 0


Query: 98  GFDWNNELKCIIMEKQLFDNWVKSHPAAKDLLNRSFLHYDDLCYVFGKDHATEGRAEIFI 157
           GF W+NE + +  +  ++ +++K+H  A+  + R   +Y DLC + G     E    + +
Sbjct: 259 GFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRPIPYYKDLCVLCGDSGIEENECFVAM 318

Query: 158 D 159
           D
Sbjct: 319 D 319

The following BLAST results are available for this feature:

BLAST of PI0021772 vs.


Match Name	E-value	Identity	Description

BLAST of PI0021772 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U098	4.4e-29	59.29	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C1M0	5.7e-29	60.36	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CTN6	1.3e-28	58.41	uncharacterized protein LOC103504332 OS=Cucumis melo OX=3656 GN=LOC103504332 PE=...	[more]
A0A5A7TZA5	1.7e-28	57.14	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D831	2.8e-28	69.77	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of PI0021772 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047075.1	9.0e-29	59.29	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK05082.1	1.2e-28	60.36	retrotransposon protein [Cucumis melo var. makuwa]	[more]
XP_008466949.1	2.6e-28	58.41	PREDICTED: uncharacterized protein LOC103504332, partial [Cucumis melo]	[more]
KAA0048374.1	3.4e-28	57.14	retrotransposon protein [Cucumis melo var. makuwa] >TYK04074.1 retrotransposon p...	[more]
KAA0041550.1	5.8e-28	69.77	retrotransposon protein [Cucumis melo var. makuwa] >TYK19704.1 retrotransposon p...	[more]

BLAST of PI0021772 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02210.1	7.4e-05	26.23	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	7.4e-05	26.23	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 87..158
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 87..158

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021772.1	PI0021772.1	mRNA