PI0021759 (gene) Melon (PI 482460) v1

Overview


Name	PI0021759
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	Reverse transcriptase
Location	chr05: 11332182 .. 11332433 (-)
RNA-Seq Expression	PI0021759
Synteny	PI0021759

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGATTCTATTGACTCACATATTGACAGTAAATTGGGTGAGAATGACAAGTCCGAGACAAATTTTATTAACTCACACATCGATAGTAAAGTAGGTGAAAATGAGAATGACAGGTCCAAGATAGTAGGTCCTGAAGATATATGTGAAAAGGGCAACATTGAAGAGATTGAGGTCATTACAAATAAAAAGGACAATGTTGATGAGAATGAGGTCATTGTAGAGATGTTAGGGCTAGAATTGACCGAATAA

mRNA sequence

ATGACTGATTCTATTGACTCACATATTGACAGTAAATTGGGTGAGAATGACAAGTCCGAGACAAATTTTATTAACTCACACATCGATAGTAAAGTAGGTGAAAATGAGAATGACAGGTCCAAGATAGTAGGTCCTGAAGATATATGTGAAAAGGGCAACATTGAAGAGATTGAGGTCATTACAAATAAAAAGGACAATGTTGATGAGAATGAGGTCATTGTAGAGATGTTAGGGCTAGAATTGACCGAATAA

Coding sequence (CDS)

ATGACTGATTCTATTGACTCACATATTGACAGTAAATTGGGTGAGAATGACAAGTCCGAGACAAATTTTATTAACTCACACATCGATAGTAAAGTAGGTGAAAATGAGAATGACAGGTCCAAGATAGTAGGTCCTGAAGATATATGTGAAAAGGGCAACATTGAAGAGATTGAGGTCATTACAAATAAAAAGGACAATGTTGATGAGAATGAGGTCATTGTAGAGATGTTAGGGCTAGAATTGACCGAATAA

Protein sequence

MTDSIDSHIDSKLGENDKSETNFINSHIDSKVGENENDRSKIVGPEDICEKGNIEEIEVITNKKDNVDENEVIVEMLGLELTE

Homology

[Close]

BLAST of PI0021759 vs. ExPASy TrEMBL
Match: A0A5A7ULN2 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold314G00610 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 5.0e-09
Identity = 41/78 (52.56%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 1   MTDSIDSHIDSKLGENDKSETNFINSHIDSKVGE---NENDRSKIVGPEDICEKGNIEEI 60
           M DSI S+I++++ EN++SE NF N+HIDSKVGE   ++N+  +   PED+ EKG+++  
Sbjct: 43  MIDSIYSYINNRMSENNRSEMNFANTHIDSKVGEKDGSKNNGFEAAVPEDMVEKGSVD-- 102

Query: 61  EVITNKKDNVDENEVIVE 76
           EVIT+++D VDENEVI E
Sbjct: 103 EVITDREDGVDENEVIAE 118

[Close]

BLAST of PI0021759 vs. ExPASy TrEMBL
Match: A0A5D3C538 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold178G00080 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 8.5e-09
Identity = 40/78 (51.28%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 1   MTDSIDSHIDSKLGENDKSETNFINSHIDSKVGENE---NDRSKIVGPEDICEKGNIEEI 60
           MTDSIDSHI++++ ENDKSE N   +H D KVGEN+   N+ S+   PED+ +KG+++  
Sbjct: 541 MTDSIDSHINNRMSENDKSEMNSTKAHSDDKVGENDGSANNGSETAIPEDMVKKGSVD-- 600

Query: 61  EVITNKKDNVDENEVIVE 76
           EVIT++   +DENEV+ E
Sbjct: 601 EVITDRYVKIDENEVVAE 616

[Close]

BLAST of PI0021759 vs. ExPASy TrEMBL
Match: A0A5A7SKD8 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold124G00320 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 39/75 (52.00%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 1  MTDSIDSHIDSKLGENDKSETNFINSHIDSKVGENENDRSKIVGPEDICEKGNIEEIEVI 60
          MT+SI+SHI+ ++ END+S+TN   +H +S VG  +N++S+ V PED+ EKGN++  EVI
Sbjct: 1  MTNSIESHINYRMSENDRSKTNSTFTHTNSPVG--KNNKSETVVPEDMVEKGNVD--EVI 60

Query: 61 TNKKDNVDENEVIVE 76
          T+K++ VDENEV+ E
Sbjct: 61 TDKENRVDENEVVAE 71

[Close]

BLAST of PI0021759 vs. ExPASy TrEMBL
Match: A0A5D3DHP8 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00720 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 39/75 (52.00%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 1  MTDSIDSHIDSKLGENDKSETNFINSHIDSKVGENENDRSKIVGPEDICEKGNIEEIEVI 60
          MT+SI+SHI+ ++ END+S+TN   +H +S VG  +N++S+ V PED+ EKGN++  EVI
Sbjct: 1  MTNSIESHINYRMSENDRSKTNSTFTHANSPVG--KNNKSETVVPEDMVEKGNVD--EVI 60

Query: 61 TNKKDNVDENEVIVE 76
          T+K++ VDENEV+ E
Sbjct: 61 TDKENRVDENEVVAE 71

[Close]

BLAST of PI0021759 vs. ExPASy TrEMBL
Match: A0A5D3CYG7 (DExH-box ATP-dependent RNA helicase DExH6 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G001950 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.5e-08
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 1   MTDSIDSHIDSKLGENDKSETNFINSHIDSKVGEN---ENDRSKIVGPEDICEKGNIEEI 60
           MTDSI+SHI      NDK ETN  N+HIDSKVGEN   EN+ SK   P+D+ EK N++  
Sbjct: 155 MTDSINSHI------NDKFETNSTNTHIDSKVGENEGFENNGSKTDVPKDMVEKENVD-- 214

Query: 61  EVITNKKDNVDENEVI 74
           EVIT+++D +DENEV+
Sbjct: 215 EVITDREDRIDENEVV 222

[Close]

BLAST of PI0021759 vs. NCBI nr
Match: KAA0055487.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK08967.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 70.1 bits (170), Expect = 1.0e-08
Identity = 41/78 (52.56%), Postives = 60/78 (76.92%), Query Frame = 0


Query: 1   MTDSIDSHIDSKLGENDKSETNFINSHIDSKVGE---NENDRSKIVGPEDICEKGNIEEI 60
           M DSI S+I++++ EN++SE NF N+HIDSKVGE   ++N+  +   PED+ EKG+++  
Sbjct: 43  MIDSIYSYINNRMSENNRSEMNFANTHIDSKVGEKDGSKNNGFEAAVPEDMVEKGSVD-- 102

Query: 61  EVITNKKDNVDENEVIVE 76
           EVIT+++D VDENEVI E
Sbjct: 103 EVITDREDGVDENEVIAE 118

[Close]

BLAST of PI0021759 vs. NCBI nr
Match: KAA0063757.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK05509.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 69.3 bits (168), Expect = 1.7e-08
Identity = 40/78 (51.28%), Postives = 57/78 (73.08%), Query Frame = 0


Query: 1   MTDSIDSHIDSKLGENDKSETNFINSHIDSKVGENE---NDRSKIVGPEDICEKGNIEEI 60
           MTDSIDSHI++++ ENDKSE N   +H D KVGEN+   N+ S+   PED+ +KG+++  
Sbjct: 541 MTDSIDSHINNRMSENDKSEMNSTKAHSDDKVGENDGSANNGSETAIPEDMVKKGSVD-- 600

Query: 61  EVITNKKDNVDENEVIVE 76
           EVIT++   +DENEV+ E
Sbjct: 601 EVITDRYVKIDENEVVAE 616

[Close]

BLAST of PI0021759 vs. NCBI nr
Match: TYK23092.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 3.0e-08
Identity = 39/75 (52.00%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 1  MTDSIDSHIDSKLGENDKSETNFINSHIDSKVGENENDRSKIVGPEDICEKGNIEEIEVI 60
          MT+SI+SHI+ ++ END+S+TN   +H +S VG  +N++S+ V PED+ EKGN++  EVI
Sbjct: 1  MTNSIESHINYRMSENDRSKTNSTFTHANSPVG--KNNKSETVVPEDMVEKGNVD--EVI 60

Query: 61 TNKKDNVDENEVIVE 76
          T+K++ VDENEV+ E
Sbjct: 61 TDKENRVDENEVVAE 71

[Close]

BLAST of PI0021759 vs. NCBI nr
Match: KAA0025133.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 68.6 bits (166), Expect = 3.0e-08
Identity = 39/75 (52.00%), Postives = 59/75 (78.67%), Query Frame = 0


Query: 1  MTDSIDSHIDSKLGENDKSETNFINSHIDSKVGENENDRSKIVGPEDICEKGNIEEIEVI 60
          MT+SI+SHI+ ++ END+S+TN   +H +S VG  +N++S+ V PED+ EKGN++  EVI
Sbjct: 1  MTNSIESHINYRMSENDRSKTNSTFTHTNSPVG--KNNKSETVVPEDMVEKGNVD--EVI 60

Query: 61 TNKKDNVDENEVIVE 76
          T+K++ VDENEV+ E
Sbjct: 61 TDKENRVDENEVVAE 71

[Close]

BLAST of PI0021759 vs. NCBI nr
Match: TYK16400.1 (DExH-box ATP-dependent RNA helicase DExH6 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 5.1e-08
Identity = 43/76 (56.58%), Postives = 55/76 (72.37%), Query Frame = 0


Query: 1   MTDSIDSHIDSKLGENDKSETNFINSHIDSKVGEN---ENDRSKIVGPEDICEKGNIEEI 60
           MTDSI+SHI      NDK ETN  N+HIDSKVGEN   EN+ SK   P+D+ EK N++  
Sbjct: 155 MTDSINSHI------NDKFETNSTNTHIDSKVGENEGFENNGSKTDVPKDMVEKENVD-- 214

Query: 61  EVITNKKDNVDENEVI 74
           EVIT+++D +DENEV+
Sbjct: 215 EVITDREDRIDENEVV 222

The following BLAST results are available for this feature:

BLAST of PI0021759 vs.


Match Name	E-value	Identity	Description

BLAST of PI0021759 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7ULN2	5.0e-09	52.56	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3C538	8.5e-09	51.28	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold17...	[more]
A0A5A7SKD8	1.4e-08	52.00	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A5D3DHP8	1.4e-08	52.00	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3CYG7	2.5e-08	56.58	DExH-box ATP-dependent RNA helicase DExH6 isoform X1 OS=Cucumis melo var. makuwa...	[more]

BLAST of PI0021759 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055487.1	1.0e-08	52.56	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK08967.1 putative m...	[more]
KAA0063757.1	1.7e-08	51.28	reverse transcriptase [Cucumis melo var. makuwa] >TYK05509.1 reverse transcripta...	[more]
TYK23092.1	3.0e-08	52.00	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
KAA0025133.1	3.0e-08	52.00	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
TYK16400.1	5.1e-08	56.58	DExH-box ATP-dependent RNA helicase DExH6 isoform X1 [Cucumis melo var. makuwa]	[more]

BLAST of PI0021759 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..44
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..17

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021759.1	PI0021759.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044249	cellular biosynthetic process
biological_process	GO:0006259	DNA metabolic process
biological_process	GO:1901576	organic substance biosynthetic process
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0043167	ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups