PI0021712 (gene) Melon (PI 482460) v1

Overview


Name	PI0021712
Type	gene
Organism	Cucumis metuliferus (Melon (PI 482460) v1)
Description	60S ribosomal protein L27
Location	chr07: 20771154 .. 20772004 (+)
RNA-Seq Expression	PI0021712
Synteny	PI0021712

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGCCGTCTTTTTCTAGGTTTACGATCTCATCGTCTCAACAGAACTAAACGGAGCATTTTTCGTAATCGAAGCTTCAATCGAGTCAAGAAATGGTGAAATTCATCAAGCCGAACAAAGCTGTTATTGTTCTTCAAGGCCGATTTGCCGGCCGGAAAGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGTCCCTACGGCCATTGTTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTCATTCGCAAAGATTCAAAGAAAAAGACAGCAAAAAAATCGAGAGTGAAGGCGTTCGTCAAGCTTGTGAATTACCAGCACATTATGCCGACGAGGTACACGCTGGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCGAAAGGGTCGAAGGTTGCGGCGTCGAAGGAGATCAAAAAGAGATTGGAGGACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTCACCAAGCTTAGGTTCTGAGGGAATCATTTCAAGTTTTGGAGGTTTGTTTCTCTTGATTCAAATTTTGAGAAACGATTTTTCTTATGATGATGAATGAGTTTGTTGATTCTCTCTTAGCTCTAAATGGGTTGAAGGAGGAAGAATGTAATCCAATGATTTTGAATCGCTCTATTTCATTTAAAGTTCTCATATTTGGATACAGATTCAATACCGAATGTTGATTAAAACAATAAGAATTTTGGAGGATCAAATGGTATTTACTAATAGGGATCACATATAGTAGTAGGAGTACATCTAGAGAGATTCTTTCACTCTGTTCTTTCATGGGTTTGATTCAATCAATCTGTATGGAATATATGTTTTTTTGTTCA

mRNA sequence

CCGCCGTCTTTTTCTAGGTTTACGATCTCATCGTCTCAACAGAACTAAACGGAGCATTTTTCGTAATCGAAGCTTCAATCGAGTCAAGAAATGGTGAAATTCATCAAGCCGAACAAAGCTGTTATTGTTCTTCAAGGCCGATTTGCCGGCCGGAAAGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGTCCCTACGGCCATTGTTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTCATTCGCAAAGATTCAAAGAAAAAGACAGCAAAAAAATCGAGAGTGAAGGCGTTCGTCAAGCTTGTGAATTACCAGCACATTATGCCGACGAGGTACACGCTGGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCGAAAGGGTCGAAGGTTGCGGCGTCGAAGGAGATCAAAAAGAGATTGGAGGACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTCACCAAGCTTAGGTTCTGAGGGAATCATTTCAAGTTTTGGAGGTTTGTTTCTCTTGATTCAAATTTTGAGAAACGATTTTTCTTATGATGATGAATGAGTTTGTTGATTCTCTCTTAGCTCTAAATGGGTTGAAGGAGGAAGAATGTAATCCAATGATTTTGAATCGCTCTATTTCATTTAAAGTTCTCATATTTGGATACAGATTCAATACCGAATGTTGATTAAAACAATAAGAATTTTGGAGGATCAAATGGTATTTACTAATAGGGATCACATATAGTAGTAGGAGTACATCTAGAGAGATTCTTTCACTCTGTTCTTTCATGGGTTTGATTCAATCAATCTGTATGGAATATATGTTTTTTTGTTCA

Coding sequence (CDS)

ATGGTGAAATTCATCAAGCCGAACAAAGCTGTTATTGTTCTTCAAGGCCGATTTGCCGGCCGGAAAGCTGTGATCGTCCGAAACTTCGATGAAGGAACCCGCGACCGTCCCTACGGCCATTGTTTGGTAGCAGGGATGAAAAAGTACCCGAGCAAGGTCATTCGCAAAGATTCAAAGAAAAAGACAGCAAAAAAATCGAGAGTGAAGGCGTTCGTCAAGCTTGTGAATTACCAGCACATTATGCCGACGAGGTACACGCTGGACGTTGATCTCAAGGATGTGGTTAATGTGGATTGCTTACAGTCGAAAGGGTCGAAGGTTGCGGCGTCGAAGGAGATCAAAAAGAGATTGGAGGACAGGTTTAAGACTGGGAAGAACAGGTGGTTTTTCACCAAGCTTAGGTTCTGA

Protein sequence

MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKKKTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDRFKTGKNRWFFTKLRF

Homology

[Close]

BLAST of PI0021712 vs. ExPASy Swiss-Prot
Match: P51419 (60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2)

HSP 1 Score: 224.2 bits (570), Expect = 9.1e-58
Identity = 108/135 (80.00%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+K NKAVI+LQGR+AG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDR 120
           KTAKKSRVK F+KLVNYQH+MPTRYTLDVDLK+V  +D LQSK  KVAA KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of PI0021712 vs. ExPASy Swiss-Prot
Match: Q05462 (60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.2e-57
Identity = 110/135 (81.48%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+KPNKAVI+LQGR+AG+KAVIV+ FD+GTR++PYGHCLVAG+KK+PSKVI+KDS K
Sbjct: 1   MVKFLKPNKAVILLQGRYAGKKAVIVKTFDDGTREKPYGHCLVAGIKKFPSKVIKKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDR 120
           KTAKKSRVKAFVKLVNYQH+MPTRYTLDVDLKD V  D LQSK  KV A KE KK LE+R
Sbjct: 61  KTAKKSRVKAFVKLVNYQHLMPTRYTLDVDLKDAVVPDVLQSKDKKVTALKETKKSLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of PI0021712 vs. ExPASy Swiss-Prot
Match: Q8LCL3 (60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2)

HSP 1 Score: 217.2 bits (552), Expect = 1.1e-55
Identity = 105/135 (77.78%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+K NKAVI+LQGR+AG+KAVI+++FD+GT DR YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDR 120
           KTAKKSRVK F+KLVNYQH+MPTRYTLDVDLK+V  +D L+SK  KV A KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of PI0021712 vs. ExPASy Swiss-Prot
Match: Q9SKX8 (60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.7e-52
Identity = 98/135 (72.59%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVK +KP KAVI+LQGR+ G+KAVIV++FD+GT ++ YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDR 120
           KTAKKSRVK F K++NYQH+MPTRYTLD+DLK+VV+ D + SK  KV A KE K + E+R
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of PI0021712 vs. ExPASy Swiss-Prot
Match: P41101 (60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 5.7e-52
Identity = 105/139 (75.54%), Postives = 116/139 (83.45%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           M KF+KPNKAVI+LQG++AGRKAVIVR FDEGTRDRPYGHCLVAG+ +YP KVIRKDS K
Sbjct: 1   MEKFLKPNKAVILLQGKYAGRKAVIVRAFDEGTRDRPYGHCLVAGISRYPKKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDL----KDVVNVDCLQSKGSKVAASKEIKKR 120
           K  KKSRVKAF+KLVNY HIMPTRYTLD DL    KDVVN D LQ++  KV A +  K R
Sbjct: 61  KAGKKSRVKAFIKLVNYNHIMPTRYTLDEDLKDVVKDVVNADVLQARDKKVTA-RRTKAR 120

Query: 121 LEDRFKTGKNRWFFTKLRF 136
           L +RFKTGKNRWFFTKLRF
Sbjct: 121 LAERFKTGKNRWFFTKLRF 138

[Close]

BLAST of PI0021712 vs. ExPASy TrEMBL
Match: A0A5A7SSA5 (60S ribosomal protein L27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003380 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.9e-66
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDR 120
           KT KKSRVKAF+KLVNYQHIMPTRYTLDVDLKDVVNVDCLQSK SKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of PI0021712 vs. ExPASy TrEMBL
Match: A0A1S3CNL3 (60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103502503 PE=3 SV=1)

HSP 1 Score: 261.5 bits (667), Expect = 1.9e-66
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDR 120
           KT KKSRVKAF+KLVNYQHIMPTRYTLDVDLKDVVNVDCLQSK SKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of PI0021712 vs. ExPASy TrEMBL
Match: A0A6J1J143 (60S ribosomal protein L27 OS=Cucurbita maxima OX=3661 GN=LOC111480374 PE=3 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 2.5e-66
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDS K
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDR 120
           KTAKKSRVKAF+KLVNYQHIMPTRYTLDVDLKDVVN DCLQSKGSKVAA+KEIKKRLEDR
Sbjct: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNADCLQSKGSKVAAAKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of PI0021712 vs. ExPASy TrEMBL
Match: A0A6J1FNC2 (60S ribosomal protein L27 OS=Cucurbita moschata OX=3662 GN=LOC111445816 PE=3 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 4.2e-66
Identity = 131/135 (97.04%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDS K
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDR 120
           KTAKKSRVKAF+KLVNYQHIMPTRYTLDVDLKDVVNVDCLQSK SKVAASKEIKKRLEDR
Sbjct: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of PI0021712 vs. ExPASy TrEMBL
Match: A0A0A0L310 (60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G618420 PE=3 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.6e-65
Identity = 129/135 (95.56%), Postives = 132/135 (97.78%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAV+VLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDR 120
           KT KKSRVKAF+KL NYQHIMPTRYTLDVDLKDVVNVDCLQSK SKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLENYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of PI0021712 vs. NCBI nr
Match: XP_008464678.1 (PREDICTED: 60S ribosomal protein L27-3-like [Cucumis melo] >KAA0032926.1 60S ribosomal protein L27-3-like [Cucumis melo var. makuwa] >TYK28074.1 60S ribosomal protein L27-3-like [Cucumis melo var. makuwa])

HSP 1 Score: 261.5 bits (667), Expect = 3.9e-66
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDR 120
           KT KKSRVKAF+KLVNYQHIMPTRYTLDVDLKDVVNVDCLQSK SKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of PI0021712 vs. NCBI nr
Match: XP_022981139.1 (60S ribosomal protein L27-like [Cucurbita maxima])

HSP 1 Score: 261.2 bits (666), Expect = 5.1e-66
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDS K
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDR 120
           KTAKKSRVKAF+KLVNYQHIMPTRYTLDVDLKDVVN DCLQSKGSKVAA+KEIKKRLEDR
Sbjct: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNADCLQSKGSKVAAAKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of PI0021712 vs. NCBI nr
Match: XP_004145994.3 (60S ribosomal protein L27-3 [Cucumis sativus] >KAE8649796.1 hypothetical protein Csa_012871 [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 6.7e-66
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAV+VLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKV+RKDSKK
Sbjct: 1   MVKFIKPNKAVVVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVVRKDSKK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDR 120
           KT KKSRVKAF+KLVNYQHIMPTRYTLDVDLKDVVNVDCLQSK SKVAASKEIKKRLEDR
Sbjct: 61  KTDKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of PI0021712 vs. NCBI nr
Match: XP_022940098.1 (60S ribosomal protein L27-3-like [Cucurbita moschata])

HSP 1 Score: 260.4 bits (664), Expect = 8.7e-66
Identity = 131/135 (97.04%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGRFAGRKAVIVRNFD+GTRDRPYGHCLVAGMKKYPSKVIRKDS K
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDDGTRDRPYGHCLVAGMKKYPSKVIRKDSTK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDR 120
           KTAKKSRVKAF+KLVNYQHIMPTRYTLDVDLKDVVNVDCLQSK SKVAASKEIKKRLEDR
Sbjct: 61  KTAKKSRVKAFIKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKVSKVAASKEIKKRLEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of PI0021712 vs. NCBI nr
Match: XP_038899503.1 (60S ribosomal protein L27-3-like [Benincasa hispida])

HSP 1 Score: 260.4 bits (664), Expect = 8.7e-66
Identity = 130/135 (96.30%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYG+CLVAGMKKYPSKVIRKDS K
Sbjct: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGYCLVAGMKKYPSKVIRKDSTK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDR 120
           KTAKKSRVKAF+KLVNYQH+MPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKR EDR
Sbjct: 61  KTAKKSRVKAFIKLVNYQHLMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRFEDR 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of PI0021712 vs. TAIR 10
Match: AT4G15000.1 (Ribosomal L27e protein family )

HSP 1 Score: 224.2 bits (570), Expect = 6.4e-59
Identity = 108/135 (80.00%), Postives = 123/135 (91.11%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+K NKAVI+LQGR+AG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDR 120
           KTAKKSRVK F+KLVNYQH+MPTRYTLDVDLK+V  +D LQSK  KVAA KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of PI0021712 vs. TAIR 10
Match: AT3G22230.1 (Ribosomal L27e protein family )

HSP 1 Score: 217.2 bits (552), Expect = 7.9e-57
Identity = 105/135 (77.78%), Postives = 121/135 (89.63%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+K NKAVI+LQGR+AG+KAVI+++FD+GT DR YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDR 120
           KTAKKSRVK F+KLVNYQH+MPTRYTLDVDLK+V  +D L+SK  KV A KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of PI0021712 vs. TAIR 10
Match: AT2G32220.1 (Ribosomal L27e protein family )

HSP 1 Score: 204.9 bits (520), Expect = 4.0e-53
Identity = 98/135 (72.59%), Postives = 117/135 (86.67%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVK +KP KAVI+LQGR+ G+KAVIV++FD+GT ++ YGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDR 120
           KTAKKSRVK F K++NYQH+MPTRYTLD+DLK+VV+ D + SK  KV A KE K + E+R
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 121 FKTGKNRWFFTKLRF 136
           FKTGKNRWFFTKLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135

[Close]

BLAST of PI0021712 vs. TAIR 10
Match: AT4G15000.2 (Ribosomal L27e protein family )

HSP 1 Score: 198.4 bits (503), Expect = 3.8e-51
Identity = 96/123 (78.05%), Postives = 111/123 (90.24%), Query Frame = 0


Query: 1   MVKFIKPNKAVIVLQGRFAGRKAVIVRNFDEGTRDRPYGHCLVAGMKKYPSKVIRKDSKK 60
           MVKF+K NKAVI+LQGR+AG+KAVI+++FD+G RDRPYGHCLVAG+KKYPSKVIRKDS K
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 61  KTAKKSRVKAFVKLVNYQHIMPTRYTLDVDLKDVVNVDCLQSKGSKVAASKEIKKRLEDR 120
           KTAKKSRVK F+KLVNYQH+MPTRYTLDVDLK+V  +D LQSK  KVAA KE K +LE+R
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 121 FKT 124
           FKT
Sbjct: 121 FKT 123

The following BLAST results are available for this feature:

BLAST of PI0021712 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P51419	9.1e-58	80.00	60S ribosomal protein L27-3 OS=Arabidopsis thaliana OX=3702 GN=RPL27C PE=2 SV=2	[more]
Q05462	1.2e-57	81.48	60S ribosomal protein L27 OS=Pisum sativum OX=3888 GN=RPL27 PE=2 SV=1	[more]
Q8LCL3	1.1e-55	77.78	60S ribosomal protein L27-2 OS=Arabidopsis thaliana OX=3702 GN=RPL27B PE=2 SV=2	[more]
Q9SKX8	5.7e-52	72.59	60S ribosomal protein L27-1 OS=Arabidopsis thaliana OX=3702 GN=RPL27A PE=2 SV=1	[more]
P41101	5.7e-52	75.54	60S ribosomal protein L27 OS=Solanum tuberosum OX=4113 GN=RPL27 PE=2 SV=1	[more]

BLAST of PI0021712 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SSA5	1.9e-66	97.78	60S ribosomal protein L27 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3CNL3	1.9e-66	97.78	60S ribosomal protein L27 OS=Cucumis melo OX=3656 GN=LOC103502503 PE=3 SV=1	[more]
A0A6J1J143	2.5e-66	96.30	60S ribosomal protein L27 OS=Cucurbita maxima OX=3661 GN=LOC111480374 PE=3 SV=1	[more]
A0A6J1FNC2	4.2e-66	97.04	60S ribosomal protein L27 OS=Cucurbita moschata OX=3662 GN=LOC111445816 PE=3 SV=...	[more]
A0A0A0L310	1.6e-65	95.56	60S ribosomal protein L27 OS=Cucumis sativus OX=3659 GN=Csa_4G618420 PE=3 SV=1	[more]

BLAST of PI0021712 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008464678.1	3.9e-66	97.78	PREDICTED: 60S ribosomal protein L27-3-like [Cucumis melo] >KAA0032926.1 60S rib...	[more]
XP_022981139.1	5.1e-66	96.30	60S ribosomal protein L27-like [Cucurbita maxima]	[more]
XP_004145994.3	6.7e-66	96.30	60S ribosomal protein L27-3 [Cucumis sativus] >KAE8649796.1 hypothetical protein...	[more]
XP_022940098.1	8.7e-66	97.04	60S ribosomal protein L27-3-like [Cucurbita moschata]	[more]
XP_038899503.1	8.7e-66	96.30	60S ribosomal protein L27-3-like [Benincasa hispida]	[more]

BLAST of PI0021712 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G15000.1	6.4e-59	80.00	Ribosomal L27e protein family	[more]
AT3G22230.1	7.9e-57	77.78	Ribosomal L27e protein family	[more]
AT2G32220.1	4.0e-53	72.59	Ribosomal L27e protein family	[more]
AT4G15000.2	3.8e-51	78.05	Ribosomal L27e protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (PI 482460) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005824	KOW	SMART	SM00739	kow_9	coord: 4..31 e-value: 0.0033 score: 26.7
IPR001141	Ribosomal protein L27e	PFAM	PF01777	Ribosomal_L27e	coord: 52..135 e-value: 1.2E-31 score: 108.9
IPR001141	Ribosomal protein L27e	PANTHER	PTHR10497	60S RIBOSOMAL PROTEIN L27	coord: 1..135
IPR038655	Ribosomal protein L27e superfamily	GENE3D	2.30.30.770		coord: 1..135 e-value: 2.0E-60 score: 204.8
None	No IPR available	PANTHER	PTHR10497:SF17	60S RIBOSOMAL PROTEIN L27	coord: 1..135
IPR018262	Ribosomal protein L27e, conserved site	PROSITE	PS01107	RIBOSOMAL_L27E	coord: 124..135
IPR041991	Eukaryotic Ribosomal Protein L27, KOW domain	CDD	cd06090	KOW_RPL27	coord: 6..88 e-value: 4.73737E-38 score: 122.292
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 2..135

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
PI0021712.1	PI0021712.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0003735	structural constituent of ribosome