PI0021630 (gene) Melon (PI 482460) v1

Overview
NamePI0021630
Typegene
OrganismCucumis metuliferus (Melon (PI 482460) v1)
DescriptionDDB1- and CUL4-associated factor 13
Locationchr11: 30995595 .. 30996838 (+)
RNA-Seq ExpressionPI0021630
SyntenyPI0021630
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAACAATCACTTACCATATTGTGTGTGTATATATATAACCTATATGTATCAATAGGAGTTATGGTTCCAAACGGGTTTGTGATCTGTTCACTAATTGGGCGTGGAATAAGCCTTTTGTCTCTGAAAGTTTTTTTCTCCGGTGATGTAAGGAATATCCTGAGTATCCATGTCAGGGGCTGTGGGGGAGGCGATCAAATTATTTGGGGTATGACCCAAAAGGCATTTTCACGATGAAGAGCGCATAGCGCATATAAGCTTGCAACTTTGTTGTGGGAGGCGTCTTTTGAGACGGGGTCCGCCCCCTTAGATGAAACCTTTATGAAAATCTATTTGGAAGCTTGAGGTGCCTCCAAGGGTGAAAGTCATGGAAGGTTGTCTCTAACTCTCTTTTTACTTTTGCCAATATTTGTAAAAGGTAAATCTCTACTAATCCGTTTTGTTTGCTTTGTAGGAAATGCATAAAGATGACTGGTCATGTTTTATGGGGTGCAAGTTTTCTAGGAGCATTTGGTTATTTTTCTTTCCCTCCTTATTTGAGTTTTTTTTTTTTTTTTTGGTGATTTCAGGAACTTTTGGAACACCTTGAACTATTGGAATGGGGTGGTTTATGCGATCGAGGTGGCGGATCAGAGGTCTGCAACTATCCTACTGTGGGATATGTCCAATTACAAAAATATGGTAAAGCGTAGTGGGTTTGGGTCAGATCGTAAGGTTCTACTGAAAAGAATCTCTCTACACTTGGAGGAGCTTGATTTGAGGGTGGATGGGGCTCTGCCCCCTCTTAGGAGGGAGAACCTGGTGAGTCATGCTTCCTGGATTCAGCCTGACGATGGAGTGTGGAAGCTCAATGCCGACGCCTCGTGGTTGGACGACGCTAGGGTAGTTGGGGATGGGTGGGTTGTTCGTGACTCCTTGGGGTATCTCATCTCTGCTGGTTACATGCCTACCCTGTCAAAGTGACCTGTAAAAGTTTTGGAAACTTTTGCTCTTATCAAAGGGCTCGAGTCCCTATTGTCTCAATTTGGTGTTGTCATTCTTTTTTCCATTGTGGTTAAGTCTAACTGTTCTGATCTTATTTTTGCACTTGGACTTAGTGTTGTGGACCTCTATGAGTTGAGTGATTTGTGGCTGAGATTAAGGTTTTGTCTGTTGTGGCTTGGGTGGTTGATTTACGTTGTTGTTCGGGTGAGGCGAATGGTGTGGCTCACCATCTTGCTATAGTGAGTCGTTTGTTTGGTTGTTG

mRNA sequence

TCAACAATCACTTACCATATTGTGTGTGTATATATATAACCTATATGTATCAATAGGAGTTATGGTTCCAAACGGGTTTGTGATCTGTTCACTAATTGGGCGTGGAATAAGCCTTTTGTCTCTGAAAGTTTTTTTCTCCGGTGATGTAAGGAATATCCTGAGTATCCATGTCAGGGGCTGTGGGGGAGGCGATCAAATTATTTGGGGTATGACCCAAAAGGCATTTTCACGATGAAGAGCGCATAGCGCATATAAGCTTGCAACTTTGTTGTGGGAGGCGTCTTTTGAGACGGGGTCCGCCCCCTTAGATGAAACCTTTATGAAAATCTATTTGGAAGCTTGAGGTGCCTCCAAGGGTGAAAGTCATGGAAGGAAATGCATAAAGATGACTGGTCATGTTTTATGGGGTGCAAGTTTTCTAGGAGCATTTGGTTATTTTTCTTTCCCTCCTTATTTGAGTTTTTTTTTTTTTTTTTGGTGATTTCAGGAACTTTTGGAACACCTTGAACTATTGGAATGGGGTGGTTTATGCGATCGAGGTGGCGGATCAGAGGTCTGCAACTATCCTACTGTGGGATATGTCCAATTACAAAAATATGGTAAAGCGTAGTGGGTTTGGGTCAGATCGTAAGGTTCTACTGAAAAGAATCTCTCTACACTTGGAGGAGCTTGATTTGAGGGTGGATGGGGCTCTGCCCCCTCTTAGGAGGGAGAACCTGGTGAGTCATGCTTCCTGGATTCAGCCTGACGATGGAGTGTGGAAGCTCAATGCCGACGCCTCGTGGTTGGACGACGCTAGGGTAGTTGGGGATGGGTGGGTTGTTCGTGACTCCTTGGGGTATCTCATCTCTGCTGGTTACATGCCTACCCTGTCAAAGTGACCTGTAAAAGTTTTGGAAACTTTTGCTCTTATCAAAGGGCTCGAGTCCCTATTGTCTCAATTTGGTGTTGTCATTCTTTTTTCCATTGTGGTTAAGTCTAACTGTTCTGATCTTATTTTTGCACTTGGACTTAGTGTTGTGGACCTCTATGAGTTGAGTGATTTGTGGCTGAGATTAAGGTTTTGTCTGTTGTGGCTTGGGTGGTTGATTTACGTTGTTGTTCGGGTGAGGCGAATGGTGTGGCTCACCATCTTGCTATAGTGAGTCGTTTGTTTGGTTGTTG

Coding sequence (CDS)

ATGTCCAATTACAAAAATATGGTAAAGCGTAGTGGGTTTGGGTCAGATCGTAAGGTTCTACTGAAAAGAATCTCTCTACACTTGGAGGAGCTTGATTTGAGGGTGGATGGGGCTCTGCCCCCTCTTAGGAGGGAGAACCTGGTGAGTCATGCTTCCTGGATTCAGCCTGACGATGGAGTGTGGAAGCTCAATGCCGACGCCTCGTGGTTGGACGACGCTAGGGTAGTTGGGGATGGGTGGGTTGTTCGTGACTCCTTGGGGTATCTCATCTCTGCTGGTTACATGCCTACCCTGTCAAAGTGA

Protein sequence

MSNYKNMVKRSGFGSDRKVLLKRISLHLEELDLRVDGALPPLRRENLVSHASWIQPDDGVWKLNADASWLDDARVVGDGWVVRDSLGYLISAGYMPTLSK
Homology
[Close]
BLAST of PI0021630 vs. ExPASy TrEMBL
Match: A0A5D3DDM7 (DDB1- and CUL4-associated factor 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold150G00210 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.4e-11
Identity = 42/78 (53.85%), Postives = 50/78 (64.10%), Query Frame = 0 

Query: 10  RSGFGSDRKVLLKRISLH-LEELDLRVDGALPPLRRENLVSHASWIQPDDGVWKLNADAS 69
           R  F  +  VLL+RI L  L+E  L+ D A   LR+EN +SHASWI P  GVWKLN +AS
Sbjct: 457 RPRFEPNCDVLLRRIVLQLLKEFSLKGDEAPFSLRKENPMSHASWIPPTVGVWKLNINAS 516

Query: 70  WLDDARVVGDGWVVRDSL 87
           WLD+    G GWVV D L
Sbjct: 517 WLDNVGASGVGWVVLDLL 534

[Close]
BLAST of PI0021630 vs. ExPASy TrEMBL
Match: A0A5A7UV83 (DDB1- and CUL4-associated factor 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G00250 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.4e-11
Identity = 42/78 (53.85%), Postives = 50/78 (64.10%), Query Frame = 0 

Query: 10  RSGFGSDRKVLLKRISLH-LEELDLRVDGALPPLRRENLVSHASWIQPDDGVWKLNADAS 69
           R  F  +  VLL+RI L  L+E  L+ D A   LR+EN +SHASWI P  GVWKLN +AS
Sbjct: 499 RPRFEPNCDVLLRRIVLQLLKEFSLKGDEAPFSLRKENPMSHASWIPPTVGVWKLNINAS 558

Query: 70  WLDDARVVGDGWVVRDSL 87
           WLD+    G GWVV D L
Sbjct: 559 WLDNVGASGVGWVVLDLL 576

[Close]
BLAST of PI0021630 vs. ExPASy TrEMBL
Match: A0A5D3E1D7 (Transforming growth factor-beta receptor-associated protein 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold129G00380 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 8.3e-11
Identity = 41/91 (45.05%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 3  NYKNMVKRSGFGSDRKVLLKRISLHLEELDLRVDGALPPLRRENLVSHASWIQPDDGVWK 62
          N  N+++ SG  SDR VLL R  +  EE  L      P +RRE+  SH+ W  P  GVWK
Sbjct: 5  NLWNIMRSSGVVSDRNVLLHRAWVRSEEFGLLASVCSPLVRRESPSSHSCWSLPIVGVWK 64

Query: 63 LNADASWLDDARVVGDGWVVRDSLGYLISAG 94
          LN DA W+D     G GW+V DS+G  I  G
Sbjct: 65 LNFDAYWVDSPSCGGIGWLVCDSVGSPILVG 95

[Close]
BLAST of PI0021630 vs. ExPASy TrEMBL
Match: A0A6J1D4B6 (uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017181 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 1.2e-04
Identity = 24/56 (42.86%), Postives = 31/56 (55.36%), Query Frame = 0 

Query: 45  ENLVSHASWIQPDDGVWKLNADASWLDDARVVGDGWVVRDSLGYLISAGYMPTLSK 101
           +NL     W  P   +WKLN DA+W+D     G GW+VRDS G  I A  +  LS+
Sbjct: 70  KNLPRTVGWTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMAECLKALSQ 125

[Close]
BLAST of PI0021630 vs. NCBI nr
Match: TYK21623.1 (DDB1- and CUL4-associated factor 13 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 42/78 (53.85%), Postives = 50/78 (64.10%), Query Frame = 0 

Query: 10  RSGFGSDRKVLLKRISLH-LEELDLRVDGALPPLRRENLVSHASWIQPDDGVWKLNADAS 69
           R  F  +  VLL+RI L  L+E  L+ D A   LR+EN +SHASWI P  GVWKLN +AS
Sbjct: 457 RPRFEPNCDVLLRRIVLQLLKEFSLKGDEAPFSLRKENPMSHASWIPPTVGVWKLNINAS 516

Query: 70  WLDDARVVGDGWVVRDSL 87
           WLD+    G GWVV D L
Sbjct: 517 WLDNVGASGVGWVVLDLL 534

[Close]
BLAST of PI0021630 vs. NCBI nr
Match: KAA0059118.1 (DDB1- and CUL4-associated factor 13 [Cucumis melo var. makuwa])

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 42/78 (53.85%), Postives = 50/78 (64.10%), Query Frame = 0 

Query: 10  RSGFGSDRKVLLKRISLH-LEELDLRVDGALPPLRRENLVSHASWIQPDDGVWKLNADAS 69
           R  F  +  VLL+RI L  L+E  L+ D A   LR+EN +SHASWI P  GVWKLN +AS
Sbjct: 499 RPRFEPNCDVLLRRIVLQLLKEFSLKGDEAPFSLRKENPMSHASWIPPTVGVWKLNINAS 558

Query: 70  WLDDARVVGDGWVVRDSL 87
           WLD+    G GWVV D L
Sbjct: 559 WLDNVGASGVGWVVLDLL 576

[Close]
BLAST of PI0021630 vs. NCBI nr
Match: KAA0043266.1 (transforming growth factor-beta receptor-associated protein 1 isoform X1 [Cucumis melo var. makuwa] >TYK29330.1 transforming growth factor-beta receptor-associated protein 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 76.3 bits (186), Expect = 1.7e-10
Identity = 41/91 (45.05%), Postives = 51/91 (56.04%), Query Frame = 0 

Query: 3  NYKNMVKRSGFGSDRKVLLKRISLHLEELDLRVDGALPPLRRENLVSHASWIQPDDGVWK 62
          N  N+++ SG  SDR VLL R  +  EE  L      P +RRE+  SH+ W  P  GVWK
Sbjct: 5  NLWNIMRSSGVVSDRNVLLHRAWVRSEEFGLLASVCSPLVRRESPSSHSCWSLPIVGVWK 64

Query: 63 LNADASWLDDARVVGDGWVVRDSLGYLISAG 94
          LN DA W+D     G GW+V DS+G  I  G
Sbjct: 65 LNFDAYWVDSPSCGGIGWLVCDSVGSPILVG 95

[Close]
BLAST of PI0021630 vs. NCBI nr
Match: TYK00062.1 (hypothetical protein E5676_scaffold596G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 8.9e-07
Identity = 36/84 (42.86%), Postives = 43/84 (51.19%), Query Frame = 0 

Query: 3  NYKNMVKRSGFGSDRKVLLKRISLHLEELDLRVDGALPPLRRENLVSHASWIQPDDGVWK 62
          NY  M+  S    DRK LL RISLH+EE  +  DG      RE  +SH  W    +  WK
Sbjct: 12 NYLIMISSSYKSLDRKTLLDRISLHVEEF-VGFDGFGSSFIRETSMSHELWTPQVNSCWK 71

Query: 63 LNADASWLDDARVVGDGWVVRDSL 87
          LN  ASW D     G GW+V  S+
Sbjct: 72 LNLYASWSDHDHASGIGWLVHASI 94

[Close]
BLAST of PI0021630 vs. NCBI nr
Match: XP_022148549.1 (uncharacterized protein LOC111017181 [Momordica charantia])

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-04
Identity = 24/56 (42.86%), Postives = 31/56 (55.36%), Query Frame = 0 

Query: 45  ENLVSHASWIQPDDGVWKLNADASWLDDARVVGDGWVVRDSLGYLISAGYMPTLSK 101
           +NL     W  P   +WKLN DA+W+D     G GW+VRDS G  I A  +  LS+
Sbjct: 70  KNLPRTVGWTPPAQHLWKLNVDATWMDSLHAGGLGWIVRDSEGRFIMAECLKALSQ 125

The following BLAST results are available for this feature:
BLAST of PI0021630 vs.
Match NameE-valueIdentityDescription
BLAST of PI0021630 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DDM76.4e-1153.85DDB1- and CUL4-associated factor 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A5A7UV836.4e-1153.85DDB1- and CUL4-associated factor 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3E1D78.3e-1145.05Transforming growth factor-beta receptor-associated protein 1 isoform X1 OS=Cucu... [more]
A0A6J1D4B61.2e-0442.86uncharacterized protein LOC111017181 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
BLAST of PI0021630 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK21623.11.3e-1053.85DDB1- and CUL4-associated factor 13 [Cucumis melo var. makuwa][more]
KAA0059118.11.3e-1053.85DDB1- and CUL4-associated factor 13 [Cucumis melo var. makuwa][more]
KAA0043266.11.7e-1045.05transforming growth factor-beta receptor-associated protein 1 isoform X1 [Cucumi... [more]
TYK00062.18.9e-0742.86hypothetical protein E5676_scaffold596G00100 [Cucumis melo var. makuwa][more]
XP_022148549.12.4e-0442.86uncharacterized protein LOC111017181 [Momordica charantia][more]
BLAST of PI0021630 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
PI0021630.1PI0021630.1mRNA